Wall clock time and date at job start Wed Apr 15 2020 11:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86799 * 120.00283 * 2 1 4 4 H 1.48500 * 109.47360 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47026 * 299.99672 * 3 2 1 6 6 H 1.48499 * 109.47127 * 59.99462 * 3 2 1 7 7 C 1.38950 * 119.99813 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99984 * 180.02562 * 7 2 1 9 9 N 1.37098 * 120.00257 * 0.02562 * 7 2 1 10 10 C 1.34779 * 120.00025 * 180.02562 * 9 7 2 11 11 O 1.21291 * 119.99858 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99692 * 180.02562 * 10 9 7 13 13 O 1.45198 * 109.46672 * 179.97438 * 12 10 9 14 14 C 1.34718 * 116.99471 * 179.97438 * 13 12 10 15 15 O 1.21462 * 119.99993 * 0.02562 * 14 13 12 16 16 C 1.47729 * 119.99739 * 180.02562 * 14 13 12 17 17 C 1.39654 * 120.14767 * 359.97438 * 16 14 13 18 18 C 1.37920 * 119.84574 * 180.02562 * 17 16 14 19 19 C 1.38397 * 120.14862 * 359.72552 * 18 17 16 20 20 C 1.38345 * 120.30102 * 0.54802 * 19 18 17 21 21 C 1.50699 * 119.92221 * 179.72843 * 20 19 18 22 22 O 1.42903 * 109.47152 * 269.73008 * 21 20 19 23 23 C 1.37963 * 120.15046 * 359.45253 * 20 19 18 24 24 H 0.97001 * 120.00137 * 0.02562 * 1 2 3 25 25 H 0.97000 * 119.99384 * 359.97438 * 9 7 2 26 26 H 1.08995 * 109.47042 * 59.99453 * 12 10 9 27 27 H 1.08996 * 109.47140 * 299.99395 * 12 10 9 28 28 H 1.07997 * 120.07821 * 359.97438 * 17 16 14 29 29 H 1.07999 * 119.92819 * 180.02562 * 18 17 16 30 30 H 1.08005 * 119.84423 * 180.27622 * 19 18 17 31 31 H 1.08997 * 109.47198 * 149.72686 * 21 20 19 32 32 H 1.09008 * 109.47393 * 29.72402 * 21 20 19 33 33 H 0.96700 * 114.00311 * 180.02562 * 22 21 20 34 34 H 1.08004 * 120.07082 * 180.24957 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3463 -0.0006 5 1 1.8895 2.3964 -1.2126 6 1 1.8893 2.3965 1.2124 7 6 2.0088 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9972 -3.5579 0.0016 11 8 3.2101 -3.5578 0.0021 12 6 1.2436 -4.8630 0.0010 13 8 2.1872 -5.9666 0.0017 14 6 1.6722 -7.2114 0.0019 15 8 0.4681 -7.3705 0.0009 16 6 2.5721 -8.3830 0.0032 17 6 3.9571 -8.2036 0.0037 18 6 4.7914 -9.3018 0.0044 19 6 4.2590 -10.5792 0.0103 20 6 2.8880 -10.7641 0.0041 21 6 2.3175 -12.1589 0.0044 22 8 2.1378 -12.6003 -1.3429 23 6 2.0419 -9.6744 0.0034 24 1 -0.4850 0.8400 -0.0004 25 1 0.3533 -2.3906 0.0005 26 1 0.6180 -4.9208 -0.8896 27 1 0.6161 -4.9205 0.8903 28 1 4.3738 -7.2073 0.0028 29 1 5.8627 -9.1646 0.0053 30 1 4.9170 -11.4357 0.0153 31 1 1.3560 -12.1581 0.5178 32 1 3.0035 -12.8320 0.5187 33 1 1.7725 -13.4924 -1.4191 34 1 0.9717 -9.8202 0.0026 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731243986.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:37 Heat of formation + Delta-G solvation = -170.103813 kcal Electronic energy + Delta-G solvation = -20232.169763 eV Core-core repulsion = 16708.197499 eV Total energy + Delta-G solvation = -3523.972264 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.82923 -40.38973 -39.81621 -37.60659 -37.43760 -36.05800 -33.45688 -33.03805 -32.32095 -30.08445 -27.04148 -26.71240 -25.25717 -22.83885 -21.80911 -21.45651 -20.10157 -18.99004 -18.34451 -18.23902 -17.77379 -17.61798 -17.00201 -16.53101 -16.39503 -15.86264 -15.79806 -15.50228 -14.75234 -14.69322 -14.55967 -14.20427 -13.76241 -13.62540 -13.57915 -13.12255 -12.95458 -12.68235 -12.48346 -12.11456 -12.02120 -11.94426 -11.77008 -11.60504 -10.95841 -10.54865 -10.14234 -10.12583 -10.01060 -8.54203 -6.05029 -0.42741 0.21363 1.26494 1.33007 1.36269 1.43476 1.58169 1.83861 2.28380 2.61689 2.98021 3.11190 3.48525 3.53364 3.80959 3.95217 4.01817 4.08153 4.10655 4.18003 4.20889 4.31901 4.50177 4.59210 4.77549 4.91697 5.11491 5.22637 5.34110 5.35633 5.41456 5.78682 5.86755 6.41444 6.53398 6.94111 7.00643 7.36947 7.90102 8.63183 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.046637 B = 0.002866 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.231199 B = 9766.813593 C =10269.695238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.010 4.010 3 Si 1.000 3.000 4 H -0.271 1.271 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.337 4.337 8 H 0.085 0.915 9 N -0.557 5.557 10 C 0.438 3.562 11 O -0.616 6.616 12 C 0.071 3.929 13 O -0.337 6.337 14 C 0.505 3.495 15 O -0.531 6.531 16 C -0.148 4.148 17 C -0.065 4.065 18 C -0.130 4.130 19 C -0.055 4.055 20 C -0.116 4.116 21 C 0.119 3.881 22 O -0.591 6.591 23 C -0.044 4.044 24 H 0.281 0.719 25 H 0.400 0.600 26 H 0.106 0.894 27 H 0.108 0.892 28 H 0.132 0.868 29 H 0.163 0.837 30 H 0.166 0.834 31 H 0.066 0.934 32 H 0.087 0.913 33 H 0.402 0.598 34 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.253 -23.981 1.109 24.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.210 4.210 3 Si 0.822 3.178 4 H -0.195 1.195 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.466 4.466 8 H 0.103 0.897 9 N -0.194 5.194 10 C 0.224 3.776 11 O -0.503 6.503 12 C -0.007 4.007 13 O -0.252 6.252 14 C 0.352 3.648 15 O -0.423 6.423 16 C -0.149 4.149 17 C -0.083 4.083 18 C -0.148 4.148 19 C -0.073 4.073 20 C -0.116 4.116 21 C 0.042 3.958 22 O -0.401 6.401 23 C -0.063 4.063 24 H 0.091 0.909 25 H 0.235 0.765 26 H 0.124 0.876 27 H 0.126 0.874 28 H 0.150 0.850 29 H 0.181 0.819 30 H 0.183 0.817 31 H 0.084 0.916 32 H 0.106 0.894 33 H 0.253 0.747 34 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 4.782 -23.249 0.986 23.756 hybrid contribution -0.902 0.750 0.103 1.178 sum 3.880 -22.499 1.089 22.857 Atomic orbital electron populations 1.69679 1.07001 1.29730 1.49162 1.26157 0.96603 1.02663 0.95604 0.84778 0.78064 0.76449 0.78471 1.19507 1.19422 1.19377 1.19768 0.92954 0.83295 1.50612 0.89711 1.41742 1.09579 1.04164 1.63952 1.20015 0.88062 0.85260 0.84239 1.90519 1.15346 1.87657 1.56762 1.22572 0.90203 0.82427 1.05462 1.86585 1.40395 1.14630 1.83574 1.21763 0.87481 0.83564 0.72030 1.90781 1.16889 1.87002 1.47612 1.19113 0.93492 0.90375 1.11941 1.21733 0.91738 1.01236 0.93624 1.21526 1.01589 0.91418 1.00233 1.21777 0.94414 0.98411 0.92667 1.19928 0.94012 0.95067 1.02601 1.21035 1.00488 0.90278 0.83976 1.86516 1.87912 1.38930 1.26762 1.21226 1.01001 0.89998 0.94058 0.90920 0.76548 0.87565 0.87424 0.84971 0.81944 0.81676 0.91581 0.89447 0.74748 0.84828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.07 13.05 21.66 0.28 -48.79 16 2 C -0.01 -0.51 5.50 84.93 0.47 -0.04 16 3 Si 1.00 42.31 29.55 68.60 2.03 44.34 16 4 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 5 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 6 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 7 C -0.34 -19.13 9.68 84.04 0.81 -18.32 16 8 H 0.08 5.10 7.16 -2.91 -0.02 5.08 16 9 N -0.56 -29.08 5.29 -306.97 -1.62 -30.71 16 10 C 0.44 21.92 7.86 87.66 0.69 22.61 16 11 O -0.62 -35.58 16.08 15.73 0.25 -35.32 16 12 C 0.07 2.80 5.95 71.24 0.42 3.23 16 13 O -0.34 -13.42 9.01 -49.89 -0.45 -13.87 16 14 C 0.50 17.93 7.90 70.33 0.56 18.49 16 15 O -0.53 -20.15 16.14 19.96 0.32 -19.83 16 16 C -0.15 -4.30 5.87 -20.10 -0.12 -4.42 16 17 C -0.06 -1.66 9.62 22.54 0.22 -1.44 16 18 C -0.13 -2.33 10.03 22.23 0.22 -2.10 16 19 C -0.05 -0.84 9.69 22.33 0.22 -0.62 16 20 C -0.12 -2.12 5.50 -19.90 -0.11 -2.23 16 21 C 0.12 1.41 7.17 71.24 0.51 1.92 16 22 O -0.59 -8.32 13.64 -148.98 -2.03 -10.35 16 23 C -0.04 -1.09 9.24 22.53 0.21 -0.88 16 24 H 0.28 13.98 8.31 -92.71 -0.77 13.21 16 25 H 0.40 19.70 7.90 -92.71 -0.73 18.96 16 26 H 0.11 3.82 8.14 -2.39 -0.02 3.80 16 27 H 0.11 3.83 8.14 -2.39 -0.02 3.81 16 28 H 0.13 3.70 7.61 -2.91 -0.02 3.68 16 29 H 0.16 1.94 8.06 -2.91 -0.02 1.92 16 30 H 0.17 1.32 8.06 -2.91 -0.02 1.29 16 31 H 0.07 0.67 8.08 -2.39 -0.02 0.65 16 32 H 0.09 0.52 8.08 -2.38 -0.02 0.50 16 33 H 0.40 1.51 9.12 -74.06 -0.68 0.83 16 34 H 0.13 3.25 7.65 -2.91 -0.02 3.23 16 Total: -1.00 -75.17 314.40 2.63 -72.53 By element: Atomic # 1 Polarization: 26.06 SS G_CDS: -0.25 Total: 25.81 kcal Atomic # 6 Polarization: 12.09 SS G_CDS: 4.10 Total: 16.19 kcal Atomic # 7 Polarization: -78.15 SS G_CDS: -1.34 Total: -79.49 kcal Atomic # 8 Polarization: -77.47 SS G_CDS: -1.91 Total: -79.38 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.34 kcal Total: -75.17 2.63 -72.53 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731243986.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.569 kcal (2) G-P(sol) polarization free energy of solvation -75.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds