Wall clock time and date at job start Wed Apr 15 2020 11:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86795 * 119.99959 * 2 1 4 4 H 1.48502 * 109.47448 * 270.00036 * 3 2 1 5 5 H 1.48501 * 109.47175 * 30.00246 * 3 2 1 6 6 H 1.48506 * 109.47415 * 150.00212 * 3 2 1 7 7 C 1.38663 * 120.00220 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99731 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99751 * 359.97438 * 7 2 1 10 10 C 1.35750 * 117.00075 * 174.94575 * 9 7 2 11 11 C 1.38874 * 120.06878 * 185.26035 * 10 9 7 12 12 C 1.38106 * 119.92542 * 179.72264 * 11 10 9 13 13 C 1.38304 * 120.07204 * 0.53100 * 12 11 10 14 14 C 1.50695 * 119.93307 * 179.74764 * 13 12 11 15 15 N 1.46508 * 109.47103 * 270.02170 * 14 13 12 16 16 C 1.34769 * 120.00011 * 179.97438 * 15 14 13 17 17 O 1.21277 * 120.00264 * 0.02562 * 16 15 14 18 18 C 1.50702 * 119.99776 * 179.97438 * 16 15 14 19 19 C 1.50703 * 109.47266 * 180.02562 * 18 16 15 20 20 O 1.20831 * 119.99657 * 359.97438 * 19 18 16 21 21 O 1.34230 * 120.00365 * 180.02562 * 19 18 16 22 22 C 1.38299 * 120.13445 * 359.76820 * 13 12 11 23 23 C 1.38101 * 120.07425 * 359.95492 * 22 13 12 24 24 H 0.96996 * 120.00178 * 359.97438 * 1 2 3 25 25 H 1.07996 * 120.03745 * 0.02562 * 11 10 9 26 26 H 1.07997 * 119.96326 * 180.27708 * 12 11 10 27 27 H 1.08998 * 109.47086 * 30.01537 * 14 13 12 28 28 H 1.08996 * 109.47192 * 150.02113 * 14 13 12 29 29 H 0.97001 * 119.99475 * 0.02562 * 15 14 13 30 30 H 1.08998 * 109.47596 * 300.00954 * 18 16 15 31 31 H 1.09005 * 109.46667 * 60.00766 * 18 16 15 32 32 H 0.96693 * 116.99667 * 180.02562 * 21 19 18 33 33 H 1.07999 * 119.96503 * 179.97438 * 22 13 12 34 34 H 1.07992 * 120.03608 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4971 2.0465 -1.4001 5 1 1.4470 2.6526 0.7001 6 1 3.5472 1.4402 0.7000 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3685 -0.0005 10 6 2.0700 -3.5046 -0.1076 11 6 1.4365 -4.7349 -0.2242 12 6 2.1874 -5.8884 -0.3387 13 6 3.5687 -5.8202 -0.3264 14 6 4.3849 -7.0813 -0.4459 15 7 4.6433 -7.6242 0.8901 16 6 5.3595 -8.7572 1.0302 17 8 5.7904 -9.3273 0.0503 18 6 5.6258 -9.3153 2.4045 19 6 6.4419 -10.5765 2.2851 20 8 6.7729 -10.9810 1.1957 21 8 6.8003 -11.2511 3.3889 22 6 4.2024 -4.5970 -0.2043 23 6 3.4573 -3.4394 -0.0951 24 1 -0.4850 0.8400 0.0004 25 1 0.3579 -4.7892 -0.2301 26 1 1.6954 -6.8451 -0.4339 27 1 3.8358 -7.8149 -1.0361 28 1 5.3320 -6.8560 -0.9360 29 1 4.2983 -7.1684 1.6738 30 1 6.1753 -8.5817 2.9944 31 1 4.6787 -9.5401 2.8951 32 1 7.3238 -12.0541 3.2619 33 1 5.2812 -4.5470 -0.1945 34 1 3.9527 -2.4846 -0.0001 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000738426580.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:43 Heat of formation + Delta-G solvation = -129.316189 kcal Electronic energy + Delta-G solvation = -20155.609116 eV Core-core repulsion = 16633.405536 eV Total energy + Delta-G solvation = -3522.203580 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.74207 -39.45287 -38.91720 -36.92459 -36.21063 -34.42063 -32.43090 -31.56001 -30.31583 -29.57693 -25.96666 -24.83005 -22.64941 -22.09295 -20.67900 -20.35645 -18.39341 -18.11309 -17.28582 -16.92240 -16.67708 -16.54116 -15.44253 -15.19417 -14.64989 -14.59557 -14.28719 -13.78866 -13.65062 -13.44996 -13.19736 -13.05306 -12.82282 -12.49218 -12.02781 -11.70337 -11.68458 -11.43767 -11.00606 -10.83605 -10.80841 -10.73358 -10.51182 -9.80303 -9.46524 -9.02634 -8.93907 -8.32621 -7.36658 -6.56030 -4.14981 1.98035 2.00107 2.09112 2.54190 2.55459 3.06249 3.07725 3.12287 3.43860 3.87847 4.35551 4.53440 4.79469 4.80707 4.98053 5.08609 5.15605 5.25494 5.38567 5.62283 5.76586 5.88912 6.08572 6.25293 6.31062 6.43113 6.56193 6.76505 6.91863 7.10162 7.23222 7.31660 7.48387 7.67622 7.67821 7.88567 8.18152 8.89292 9.57038 10.61433 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.040236 B = 0.002719 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.727200 B =10295.835909 C =10504.470045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.040 3.960 3 Si 0.942 3.058 4 H -0.272 1.272 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.394 4.394 8 H 0.094 0.906 9 O -0.173 6.173 10 C 0.161 3.839 11 C -0.195 4.195 12 C -0.054 4.054 13 C -0.216 4.216 14 C 0.181 3.819 15 N -0.720 5.720 16 C 0.505 3.495 17 O -0.507 6.507 18 C -0.138 4.138 19 C 0.475 3.525 20 O -0.470 6.470 21 O -0.523 6.523 22 C -0.050 4.050 23 C -0.237 4.237 24 H 0.272 0.728 25 H 0.118 0.882 26 H 0.113 0.887 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.402 0.598 30 H 0.133 0.867 31 H 0.133 0.867 32 H 0.412 0.588 33 H 0.108 0.892 34 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.326 -14.090 6.840 18.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.165 4.165 3 Si 0.767 3.233 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.191 1.191 7 C -0.470 4.470 8 H 0.111 0.889 9 O -0.075 6.075 10 C 0.106 3.894 11 C -0.215 4.215 12 C -0.073 4.073 13 C -0.218 4.218 14 C 0.059 3.941 15 N -0.374 5.374 16 C 0.289 3.711 17 O -0.381 6.381 18 C -0.179 4.179 19 C 0.314 3.686 20 O -0.354 6.354 21 O -0.336 6.336 22 C -0.069 4.069 23 C -0.256 4.256 24 H 0.082 0.918 25 H 0.136 0.864 26 H 0.131 0.869 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.237 0.763 30 H 0.151 0.849 31 H 0.151 0.849 32 H 0.271 0.729 33 H 0.126 0.874 34 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 9.060 -14.032 5.847 17.697 hybrid contribution 0.601 0.645 0.395 0.966 sum 9.661 -13.387 6.241 17.649 Atomic orbital electron populations 1.70032 1.06024 1.27925 1.45316 1.25327 0.95865 0.98963 0.96305 0.85688 0.78923 0.79871 0.78831 1.19772 1.20176 1.19122 1.21361 0.91877 0.80705 1.53056 0.88892 1.83977 1.34534 1.11572 1.77431 1.19447 0.90330 0.88058 0.91596 1.20216 0.99688 0.90271 1.11291 1.20536 0.92750 0.96851 0.97135 1.19193 0.93554 0.93455 1.15552 1.19983 0.98670 0.92618 0.82849 1.46273 1.54868 1.25676 1.10552 1.19860 0.79582 0.81508 0.90165 1.90869 1.49261 1.58358 1.39624 1.21191 1.02891 0.94793 0.98989 1.22646 0.78785 0.85277 0.81884 1.90892 1.50217 1.66406 1.27858 1.84488 1.68891 1.41918 1.38296 1.20645 0.98389 0.91656 0.96208 1.21162 0.93770 0.98972 1.11746 0.91838 0.86360 0.86934 0.91430 0.91473 0.76315 0.84895 0.84882 0.72936 0.87376 0.85407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.38 13.67 55.48 0.76 -23.62 16 2 C 0.04 1.07 5.49 -17.51 -0.10 0.98 16 3 Si 0.94 19.75 29.55 -169.99 -5.02 14.73 16 4 H -0.27 -5.60 7.11 56.52 0.40 -5.19 16 5 H -0.28 -5.69 7.11 56.52 0.40 -5.28 16 6 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 7 C -0.39 -10.55 9.49 30.89 0.29 -10.26 16 8 H 0.09 2.29 5.20 -52.49 -0.27 2.02 16 9 O -0.17 -4.70 9.76 0.05 0.00 -4.70 16 10 C 0.16 3.63 6.65 -39.11 -0.26 3.37 16 11 C -0.20 -3.81 9.99 -39.39 -0.39 -4.21 16 12 C -0.05 -0.87 9.69 -39.61 -0.38 -1.25 16 13 C -0.22 -3.30 5.25 -104.58 -0.55 -3.85 16 14 C 0.18 2.40 5.80 -5.19 -0.03 2.37 16 15 N -0.72 -7.96 5.55 -61.47 -0.34 -8.30 16 16 C 0.51 6.06 7.82 -10.99 -0.09 5.97 16 17 O -0.51 -8.64 14.19 -18.95 -0.27 -8.91 16 18 C -0.14 -1.04 6.30 -29.03 -0.18 -1.22 16 19 C 0.48 4.74 8.32 36.01 0.30 5.04 16 20 O -0.47 -7.00 14.94 -26.86 -0.40 -7.40 16 21 O -0.52 -3.54 13.42 -39.26 -0.53 -4.07 16 22 C -0.05 -0.83 9.69 -39.61 -0.38 -1.22 16 23 C -0.24 -4.77 9.17 -39.39 -0.36 -5.13 16 24 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 25 H 0.12 2.25 8.06 -52.49 -0.42 1.82 16 26 H 0.11 1.53 8.06 -52.49 -0.42 1.10 16 27 H 0.07 0.92 8.08 -51.93 -0.42 0.50 16 28 H 0.07 0.93 8.08 -51.93 -0.42 0.51 16 29 H 0.40 3.60 8.46 -40.82 -0.35 3.26 16 30 H 0.13 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.13 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.41 1.23 9.10 45.56 0.41 1.64 16 33 H 0.11 1.55 8.06 -52.49 -0.42 1.12 16 34 H 0.13 2.59 5.64 -52.49 -0.30 2.30 16 LS Contribution 309.41 15.07 4.66 4.66 Total: -1.00 -35.18 309.41 -5.86 -41.04 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -2.59 Total: 5.97 kcal Atomic # 6 Polarization: -7.26 SS G_CDS: -2.13 Total: -9.39 kcal Atomic # 7 Polarization: -32.34 SS G_CDS: 0.42 Total: -31.92 kcal Atomic # 8 Polarization: -23.89 SS G_CDS: -1.20 Total: -25.08 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.02 Total: 14.73 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -35.18 -5.86 -41.04 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000738426580.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.277 kcal (2) G-P(sol) polarization free energy of solvation -35.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds