Wall clock time and date at job start Wed Apr 15 2020 11:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86795 * 119.99959 * 2 1 4 4 H 1.48502 * 109.47448 * 270.00036 * 3 2 1 5 5 H 1.48501 * 109.47175 * 30.00246 * 3 2 1 6 6 H 1.48506 * 109.47415 * 150.00212 * 3 2 1 7 7 C 1.38663 * 120.00220 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99731 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99751 * 359.97438 * 7 2 1 10 10 C 1.35750 * 117.00075 * 174.94575 * 9 7 2 11 11 C 1.38874 * 120.06878 * 185.26035 * 10 9 7 12 12 C 1.38106 * 119.92542 * 179.72264 * 11 10 9 13 13 C 1.38304 * 120.07204 * 0.53100 * 12 11 10 14 14 C 1.50695 * 119.93307 * 179.74764 * 13 12 11 15 15 N 1.46508 * 109.47103 * 270.02170 * 14 13 12 16 16 C 1.34769 * 120.00011 * 179.97438 * 15 14 13 17 17 O 1.21277 * 120.00264 * 0.02562 * 16 15 14 18 18 C 1.50702 * 119.99776 * 179.97438 * 16 15 14 19 19 C 1.50703 * 109.47266 * 180.02562 * 18 16 15 20 20 O 1.20831 * 119.99657 * 359.97438 * 19 18 16 21 21 O 1.34230 * 120.00365 * 180.02562 * 19 18 16 22 22 C 1.38299 * 120.13445 * 359.76820 * 13 12 11 23 23 C 1.38101 * 120.07425 * 359.95492 * 22 13 12 24 24 H 0.96996 * 120.00178 * 359.97438 * 1 2 3 25 25 H 1.07996 * 120.03745 * 0.02562 * 11 10 9 26 26 H 1.07997 * 119.96326 * 180.27708 * 12 11 10 27 27 H 1.08998 * 109.47086 * 30.01537 * 14 13 12 28 28 H 1.08996 * 109.47192 * 150.02113 * 14 13 12 29 29 H 0.97001 * 119.99475 * 0.02562 * 15 14 13 30 30 H 1.08998 * 109.47596 * 300.00954 * 18 16 15 31 31 H 1.09005 * 109.46667 * 60.00766 * 18 16 15 32 32 H 0.96693 * 116.99667 * 180.02562 * 21 19 18 33 33 H 1.07999 * 119.96503 * 179.97438 * 22 13 12 34 34 H 1.07992 * 120.03608 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4971 2.0465 -1.4001 5 1 1.4470 2.6526 0.7001 6 1 3.5472 1.4402 0.7000 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3685 -0.0005 10 6 2.0700 -3.5046 -0.1076 11 6 1.4365 -4.7349 -0.2242 12 6 2.1874 -5.8884 -0.3387 13 6 3.5687 -5.8202 -0.3264 14 6 4.3849 -7.0813 -0.4459 15 7 4.6433 -7.6242 0.8901 16 6 5.3595 -8.7572 1.0302 17 8 5.7904 -9.3273 0.0503 18 6 5.6258 -9.3153 2.4045 19 6 6.4419 -10.5765 2.2851 20 8 6.7729 -10.9810 1.1957 21 8 6.8003 -11.2511 3.3889 22 6 4.2024 -4.5970 -0.2043 23 6 3.4573 -3.4394 -0.0951 24 1 -0.4850 0.8400 0.0004 25 1 0.3579 -4.7892 -0.2301 26 1 1.6954 -6.8451 -0.4339 27 1 3.8358 -7.8149 -1.0361 28 1 5.3320 -6.8560 -0.9360 29 1 4.2983 -7.1684 1.6738 30 1 6.1753 -8.5817 2.9944 31 1 4.6787 -9.5401 2.8951 32 1 7.3238 -12.0541 3.2619 33 1 5.2812 -4.5470 -0.1945 34 1 3.9527 -2.4846 -0.0001 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000738426580.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:42 Heat of formation + Delta-G solvation = -155.870027 kcal Electronic energy + Delta-G solvation = -20156.760577 eV Core-core repulsion = 16633.405536 eV Total energy + Delta-G solvation = -3523.355041 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.56495 -40.85385 -40.05049 -38.46361 -36.96102 -35.58688 -34.27296 -32.48418 -31.80991 -30.81191 -27.65793 -26.26647 -23.63238 -23.48082 -22.10806 -21.26750 -19.86128 -19.11626 -18.88898 -17.79094 -17.68206 -17.29748 -16.51672 -16.42140 -16.25206 -15.80314 -15.71861 -15.50057 -15.05997 -14.57084 -14.34982 -14.24741 -13.89488 -13.71919 -13.45217 -13.02201 -12.96559 -12.53970 -12.43054 -12.34723 -12.23904 -12.10035 -11.63710 -11.19151 -10.88725 -10.72728 -10.04355 -9.79330 -8.99603 -8.47722 -6.15789 0.55109 0.59360 1.29818 1.36829 1.44862 1.53645 1.66172 1.81522 2.17776 2.57977 2.88009 3.17522 3.50639 3.66285 3.90093 4.04419 4.19142 4.33218 4.34344 4.47822 4.57287 4.58877 4.80229 4.82948 5.05911 5.15502 5.28291 5.44926 5.54353 5.70638 5.70914 5.76620 6.02409 6.17557 6.60341 6.97351 7.06391 7.31833 7.76867 8.75147 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.040236 B = 0.002719 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.727200 B =10295.835909 C =10504.470045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.022 4.022 3 Si 1.017 2.983 4 H -0.265 1.265 5 H -0.272 1.272 6 H -0.251 1.251 7 C -0.413 4.413 8 H 0.104 0.896 9 O -0.229 6.229 10 C 0.122 3.878 11 C -0.204 4.204 12 C -0.043 4.043 13 C -0.181 4.181 14 C 0.185 3.815 15 N -0.710 5.710 16 C 0.504 3.496 17 O -0.561 6.561 18 C -0.129 4.129 19 C 0.479 3.521 20 O -0.529 6.529 21 O -0.511 6.511 22 C -0.045 4.045 23 C -0.244 4.244 24 H 0.273 0.727 25 H 0.115 0.885 26 H 0.148 0.852 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.416 0.584 30 H 0.170 0.830 31 H 0.171 0.829 32 H 0.428 0.572 33 H 0.140 0.860 34 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.400 -15.651 8.138 21.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.220 4.220 3 Si 0.837 3.163 4 H -0.190 1.190 5 H -0.197 1.197 6 H -0.174 1.174 7 C -0.489 4.489 8 H 0.121 0.879 9 O -0.135 6.135 10 C 0.071 3.929 11 C -0.224 4.224 12 C -0.061 4.061 13 C -0.182 4.182 14 C 0.062 3.938 15 N -0.364 5.364 16 C 0.290 3.710 17 O -0.438 6.438 18 C -0.168 4.168 19 C 0.320 3.680 20 O -0.417 6.417 21 O -0.325 6.325 22 C -0.063 4.063 23 C -0.263 4.263 24 H 0.082 0.918 25 H 0.133 0.867 26 H 0.166 0.834 27 H 0.088 0.912 28 H 0.086 0.914 29 H 0.253 0.747 30 H 0.188 0.812 31 H 0.188 0.812 32 H 0.290 0.710 33 H 0.157 0.843 34 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 11.164 -15.648 7.204 20.528 hybrid contribution 0.109 0.695 0.016 0.704 sum 11.273 -14.953 7.220 20.070 Atomic orbital electron populations 1.70175 1.08035 1.28857 1.48652 1.26575 0.96811 1.02756 0.95828 0.84598 0.77919 0.74641 0.79164 1.19048 1.19710 1.17448 1.21833 0.92578 0.81341 1.53153 0.87859 1.83948 1.36082 1.12670 1.80848 1.20010 0.91663 0.87952 0.93281 1.20450 1.00081 0.90428 1.11412 1.20883 0.93055 0.96987 0.95203 1.19470 0.93420 0.94017 1.11302 1.19839 0.98266 0.91379 0.84310 1.46039 1.54667 1.25639 1.10053 1.20537 0.78255 0.80801 0.91369 1.90866 1.51305 1.59812 1.41867 1.21267 1.04840 0.94297 0.96442 1.23103 0.77849 0.85604 0.81412 1.90889 1.52703 1.68077 1.30049 1.84455 1.68711 1.42621 1.36739 1.20941 0.99828 0.90719 0.94853 1.21246 0.92981 1.00094 1.11963 0.91814 0.86725 0.83444 0.91169 0.91418 0.74676 0.81240 0.81170 0.71026 0.84266 0.86224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.04 13.67 21.62 0.30 -54.75 16 2 C -0.02 -1.21 5.49 84.84 0.47 -0.74 16 3 Si 1.02 41.44 29.55 68.60 2.03 43.47 16 4 H -0.27 -10.37 7.11 99.48 0.71 -9.66 16 5 H -0.27 -10.72 7.11 99.48 0.71 -10.02 16 6 H -0.25 -9.40 7.11 99.48 0.71 -8.69 16 7 C -0.41 -23.11 9.49 67.92 0.64 -22.47 16 8 H 0.10 5.26 5.20 -2.91 -0.02 5.24 16 9 O -0.23 -13.20 9.76 -22.72 -0.22 -13.43 16 10 C 0.12 5.65 6.65 22.58 0.15 5.80 16 11 C -0.20 -7.93 9.99 22.39 0.22 -7.71 16 12 C -0.04 -1.26 9.69 22.25 0.22 -1.04 16 13 C -0.18 -4.88 5.25 -19.84 -0.10 -4.98 16 14 C 0.19 4.21 5.80 85.63 0.50 4.70 16 15 N -0.71 -12.72 5.55 -466.80 -2.59 -15.31 16 16 C 0.50 10.41 7.82 87.66 0.69 11.10 16 17 O -0.56 -18.17 14.19 20.42 0.29 -17.88 16 18 C -0.13 -1.37 6.30 29.10 0.18 -1.19 16 19 C 0.48 8.24 8.32 71.24 0.59 8.83 16 20 O -0.53 -15.25 14.94 29.70 0.44 -14.80 16 21 O -0.51 -5.27 13.42 -51.41 -0.69 -5.96 16 22 C -0.04 -1.36 9.69 22.25 0.22 -1.15 16 23 C -0.24 -9.69 9.17 22.39 0.21 -9.48 16 24 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 25 H 0.11 4.45 8.06 -2.91 -0.02 4.42 16 26 H 0.15 3.36 8.06 -2.91 -0.02 3.34 16 27 H 0.07 1.65 8.08 -2.39 -0.02 1.63 16 28 H 0.07 1.62 8.08 -2.39 -0.02 1.60 16 29 H 0.42 5.39 8.46 -92.71 -0.78 4.61 16 30 H 0.17 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.17 0.61 8.14 -2.38 -0.02 0.59 16 32 H 0.43 1.44 9.10 -74.06 -0.67 0.77 16 33 H 0.14 3.41 8.06 -2.91 -0.02 3.39 16 34 H 0.12 4.90 5.64 -2.91 -0.02 4.88 16 Total: -1.00 -83.30 309.41 3.24 -80.06 By element: Atomic # 1 Polarization: 17.20 SS G_CDS: -0.29 Total: 16.91 kcal Atomic # 6 Polarization: -22.30 SS G_CDS: 3.97 Total: -18.32 kcal Atomic # 7 Polarization: -67.76 SS G_CDS: -2.29 Total: -70.05 kcal Atomic # 8 Polarization: -51.89 SS G_CDS: -0.18 Total: -52.07 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 2.03 Total: 43.47 kcal Total: -83.30 3.24 -80.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000738426580.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.808 kcal (2) G-P(sol) polarization free energy of solvation -83.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds