Wall clock time and date at job start Wed Apr 15 2020 11:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00044 * 2 1 4 4 H 1.48500 * 109.47136 * 239.99888 * 3 2 1 5 5 H 1.48490 * 109.47102 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46513 * 120.00430 * 3 2 1 7 7 C 1.37878 * 119.99534 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99747 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00064 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.46647 * 180.02562 * 9 7 2 11 11 O 1.45201 * 109.46841 * 179.97438 * 10 9 7 12 12 C 1.34756 * 117.00396 * 179.97438 * 11 10 9 13 13 O 1.21519 * 119.99521 * 359.97438 * 12 11 10 14 14 C 1.47365 * 120.00512 * 180.02562 * 12 11 10 15 15 C 1.39767 * 120.20484 * 5.21480 * 14 12 11 16 16 C 1.37767 * 119.91484 * 180.27949 * 15 14 12 17 17 C 1.38583 * 120.33737 * 359.71653 * 16 15 14 18 18 C 1.38014 * 120.42068 * 359.97438 * 17 16 15 19 19 C 1.38853 * 120.07306 * 0.02562 * 18 17 16 20 20 N 1.39255 * 120.16605 * 180.02562 * 19 18 17 21 21 C 1.34781 * 120.00310 * 334.72082 * 20 19 18 22 22 O 1.21507 * 119.99533 * 354.35801 * 21 20 19 23 23 O 1.34634 * 120.00451 * 174.08026 * 21 20 19 24 24 H 0.97004 * 119.99550 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47007 * 60.00074 * 9 7 2 26 26 H 1.08998 * 109.46749 * 299.99632 * 9 7 2 27 27 H 1.08998 * 109.47594 * 60.00142 * 10 9 7 28 28 H 1.08990 * 109.47152 * 299.99461 * 10 9 7 29 29 H 1.07997 * 120.04124 * 359.97183 * 15 14 12 30 30 H 1.08001 * 119.82934 * 179.74679 * 16 15 14 31 31 H 1.07997 * 119.78860 * 180.02562 * 17 16 15 32 32 H 1.08000 * 119.95933 * 180.02562 * 18 17 16 33 33 H 0.96998 * 120.00332 * 154.71990 * 20 19 18 34 34 H 0.96696 * 117.00273 * 180.27905 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1029 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 8 1.5191 -4.9196 0.0001 12 6 2.2529 -6.0498 -0.0004 13 8 3.4664 -5.9862 -0.0017 14 6 1.5838 -7.3628 -0.0004 15 6 0.1928 -7.4432 -0.1097 16 6 -0.4270 -8.6736 -0.1033 17 6 0.3224 -9.8342 0.0053 18 6 1.6974 -9.7713 0.1075 19 6 2.3398 -8.5404 0.1028 20 7 3.7271 -8.4747 0.2054 21 6 4.4069 -9.4746 0.8009 22 8 3.8047 -10.3827 1.3385 23 8 5.7533 -9.4700 0.7952 24 1 -0.4850 0.8401 0.0004 25 1 0.6239 -2.5567 -0.8903 26 1 0.6246 -2.5570 0.8897 27 1 2.8718 -3.6045 0.8894 28 1 2.8717 -3.6044 -0.8905 29 1 -0.3959 -6.5417 -0.1941 30 1 -1.5023 -8.7339 -0.1837 31 1 -0.1725 -10.7941 0.0090 32 1 2.2741 -10.6806 0.1913 33 1 4.2041 -7.7094 -0.1517 34 1 6.1966 -10.2104 1.2314 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739073705.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:46 Heat of formation + Delta-G solvation = -144.271345 kcal Electronic energy + Delta-G solvation = -20787.760998 eV Core-core repulsion = 17264.908914 eV Total energy + Delta-G solvation = -3522.852084 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.32550 -40.08573 -38.74389 -36.55532 -36.30246 -34.98498 -33.39967 -31.65983 -30.19246 -29.88519 -25.50220 -24.08223 -23.90808 -21.76076 -21.13528 -20.82243 -19.08965 -17.93227 -17.74120 -17.04922 -16.60106 -16.36038 -16.04004 -15.98860 -14.94193 -14.66054 -14.50840 -14.05930 -13.85915 -13.58114 -12.97416 -12.89860 -12.39932 -12.22242 -11.93759 -11.82059 -11.31963 -11.11838 -10.98326 -10.79821 -10.76373 -10.65209 -10.26022 -9.74451 -9.68215 -9.35936 -9.18621 -8.47396 -8.38935 -6.13581 -4.18294 0.55780 1.12537 2.04430 2.48660 2.64519 3.00409 3.28155 3.32465 3.35788 3.68855 4.26076 4.36015 4.63772 4.78877 4.89820 5.18093 5.19678 5.23129 5.30631 5.73571 5.93717 5.99106 6.02171 6.06346 6.11487 6.25531 6.37402 6.56491 6.70848 6.75083 7.18613 7.49904 7.57184 7.80761 7.99080 8.06923 8.19588 8.86826 9.46323 10.97834 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.025293 B = 0.003547 C = 0.003138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.739589 B = 7891.694772 C = 8920.729487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.062 3.938 3 Si 0.900 3.100 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.529 4.529 8 H 0.059 0.941 9 C 0.025 3.975 10 C 0.075 3.925 11 O -0.345 6.345 12 C 0.511 3.489 13 O -0.527 6.527 14 C -0.157 4.157 15 C -0.035 4.035 16 C -0.153 4.153 17 C -0.064 4.064 18 C -0.151 4.151 19 C 0.225 3.775 20 N -0.637 5.637 21 C 0.667 3.333 22 O -0.564 6.564 23 O -0.516 6.516 24 H 0.264 0.736 25 H 0.029 0.971 26 H 0.029 0.971 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.149 0.851 30 H 0.134 0.866 31 H 0.132 0.868 32 H 0.154 0.846 33 H 0.434 0.566 34 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.156 -20.715 -0.592 20.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.141 4.141 3 Si 0.727 3.273 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.567 4.567 8 H 0.077 0.923 9 C -0.012 4.012 10 C 0.003 3.997 11 O -0.260 6.260 12 C 0.358 3.642 13 O -0.419 6.419 14 C -0.161 4.161 15 C -0.053 4.053 16 C -0.171 4.171 17 C -0.082 4.082 18 C -0.171 4.171 19 C 0.129 3.871 20 N -0.296 5.296 21 C 0.420 3.580 22 O -0.453 6.453 23 O -0.326 6.326 24 H 0.074 0.926 25 H 0.048 0.952 26 H 0.047 0.953 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.166 0.834 30 H 0.152 0.848 31 H 0.150 0.850 32 H 0.171 0.829 33 H 0.281 0.719 34 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges 3.048 -20.583 -0.538 20.814 hybrid contribution 1.130 0.922 0.178 1.469 sum 4.178 -19.661 -0.360 20.103 Atomic orbital electron populations 1.69961 1.06095 1.27161 1.49556 1.24975 0.94920 0.99383 0.94785 0.86523 0.79489 0.82443 0.78798 1.20046 1.21095 1.20061 1.20926 0.93149 0.90076 1.52516 0.92287 1.19177 0.94177 0.88908 0.98970 1.23739 0.96507 0.78310 1.01181 1.86593 1.41678 1.15525 1.82223 1.20936 0.85346 0.85527 0.72425 1.90536 1.15358 1.87652 1.48359 1.18944 0.94248 0.88903 1.13978 1.21436 0.92037 0.99310 0.92565 1.21176 1.00688 0.91923 1.03347 1.21300 0.93142 0.98962 0.94836 1.21382 0.95294 0.96827 1.03642 1.17439 0.80762 0.93043 0.95904 1.42513 1.05218 1.23567 1.58328 1.17728 0.80879 0.81819 0.77580 1.91018 1.68866 1.37171 1.48281 1.84216 1.18694 1.53841 1.75887 0.92608 0.95245 0.95274 0.92079 0.92018 0.83355 0.84833 0.84969 0.82892 0.71877 0.70783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.00 13.29 55.43 0.74 -25.26 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.53 -14.63 9.11 -34.44 -0.31 -14.94 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 9 C 0.02 0.63 5.35 -27.88 -0.15 0.48 16 10 C 0.07 1.62 5.42 37.16 0.20 1.82 16 11 O -0.34 -6.67 9.48 -40.64 -0.39 -7.06 16 12 C 0.51 8.90 7.88 34.44 0.27 9.18 16 13 O -0.53 -9.70 13.55 -19.28 -0.26 -9.96 16 14 C -0.16 -2.27 5.89 -104.83 -0.62 -2.88 16 15 C -0.03 -0.43 9.61 -39.18 -0.38 -0.80 16 16 C -0.15 -1.49 10.02 -39.63 -0.40 -1.88 16 17 C -0.06 -0.61 10.03 -39.54 -0.40 -1.00 16 18 C -0.15 -1.79 8.70 -39.44 -0.34 -2.13 16 19 C 0.23 3.08 6.43 -83.48 -0.54 2.54 16 20 N -0.64 -8.59 4.96 -14.09 -0.07 -8.66 16 21 C 0.67 8.27 8.92 54.06 0.48 8.75 16 22 O -0.56 -7.88 14.31 -19.28 -0.28 -8.16 16 23 O -0.52 -4.72 13.48 -40.31 -0.54 -5.26 16 24 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 25 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 28 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 29 H 0.15 1.76 7.62 -52.49 -0.40 1.36 16 30 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 31 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 32 H 0.15 1.82 5.81 -52.49 -0.31 1.51 16 33 H 0.43 6.10 5.93 -40.82 -0.24 5.86 16 34 H 0.43 1.64 9.11 45.56 0.42 2.05 16 LS Contribution 305.93 15.07 4.61 4.61 Total: -1.00 -32.54 305.93 -6.09 -38.64 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -2.61 Total: 4.22 kcal Atomic # 6 Polarization: 3.03 SS G_CDS: -2.27 Total: 0.76 kcal Atomic # 7 Polarization: -34.59 SS G_CDS: 0.67 Total: -33.92 kcal Atomic # 8 Polarization: -28.97 SS G_CDS: -1.47 Total: -30.44 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -32.54 -6.09 -38.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739073705.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.635 kcal (2) G-P(sol) polarization free energy of solvation -32.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds