Wall clock time and date at job start Wed Apr 15 2020 11:43:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00044 * 2 1 4 4 H 1.48500 * 109.47136 * 239.99888 * 3 2 1 5 5 H 1.48490 * 109.47102 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46513 * 120.00430 * 3 2 1 7 7 C 1.37878 * 119.99534 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99747 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00064 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.46647 * 180.02562 * 9 7 2 11 11 O 1.45201 * 109.46841 * 179.97438 * 10 9 7 12 12 C 1.34756 * 117.00396 * 179.97438 * 11 10 9 13 13 O 1.21519 * 119.99521 * 359.97438 * 12 11 10 14 14 C 1.47365 * 120.00512 * 180.02562 * 12 11 10 15 15 C 1.39767 * 120.20484 * 5.21480 * 14 12 11 16 16 C 1.37767 * 119.91484 * 180.27949 * 15 14 12 17 17 C 1.38583 * 120.33737 * 359.71653 * 16 15 14 18 18 C 1.38014 * 120.42068 * 359.97438 * 17 16 15 19 19 C 1.38853 * 120.07306 * 0.02562 * 18 17 16 20 20 N 1.39255 * 120.16605 * 180.02562 * 19 18 17 21 21 C 1.34781 * 120.00310 * 334.72082 * 20 19 18 22 22 O 1.21507 * 119.99533 * 354.35801 * 21 20 19 23 23 O 1.34634 * 120.00451 * 174.08026 * 21 20 19 24 24 H 0.97004 * 119.99550 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47007 * 60.00074 * 9 7 2 26 26 H 1.08998 * 109.46749 * 299.99632 * 9 7 2 27 27 H 1.08998 * 109.47594 * 60.00142 * 10 9 7 28 28 H 1.08990 * 109.47152 * 299.99461 * 10 9 7 29 29 H 1.07997 * 120.04124 * 359.97183 * 15 14 12 30 30 H 1.08001 * 119.82934 * 179.74679 * 16 15 14 31 31 H 1.07997 * 119.78860 * 180.02562 * 17 16 15 32 32 H 1.08000 * 119.95933 * 180.02562 * 18 17 16 33 33 H 0.96998 * 120.00332 * 154.71990 * 20 19 18 34 34 H 0.96696 * 117.00273 * 180.27905 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1029 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 8 1.5191 -4.9196 0.0001 12 6 2.2529 -6.0498 -0.0004 13 8 3.4664 -5.9862 -0.0017 14 6 1.5838 -7.3628 -0.0004 15 6 0.1928 -7.4432 -0.1097 16 6 -0.4270 -8.6736 -0.1033 17 6 0.3224 -9.8342 0.0053 18 6 1.6974 -9.7713 0.1075 19 6 2.3398 -8.5404 0.1028 20 7 3.7271 -8.4747 0.2054 21 6 4.4069 -9.4746 0.8009 22 8 3.8047 -10.3827 1.3385 23 8 5.7533 -9.4700 0.7952 24 1 -0.4850 0.8401 0.0004 25 1 0.6239 -2.5567 -0.8903 26 1 0.6246 -2.5570 0.8897 27 1 2.8718 -3.6045 0.8894 28 1 2.8717 -3.6044 -0.8905 29 1 -0.3959 -6.5417 -0.1941 30 1 -1.5023 -8.7339 -0.1837 31 1 -0.1725 -10.7941 0.0090 32 1 2.2741 -10.6806 0.1913 33 1 4.2041 -7.7094 -0.1517 34 1 6.1966 -10.2104 1.2314 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739073705.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:45 Heat of formation + Delta-G solvation = -166.511524 kcal Electronic energy + Delta-G solvation = -20788.725405 eV Core-core repulsion = 17264.908914 eV Total energy + Delta-G solvation = -3523.816491 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.35710 -41.32794 -39.78240 -37.82983 -37.32801 -36.03060 -35.43749 -32.87917 -31.93754 -30.82992 -27.29758 -25.39748 -24.83996 -23.18132 -22.45390 -22.16194 -20.03258 -19.24172 -18.78951 -18.33806 -18.00601 -17.64179 -17.57137 -17.19111 -16.55298 -15.81779 -15.61242 -15.23172 -15.06372 -14.69577 -14.40268 -14.32943 -14.04074 -13.25580 -13.16445 -13.01530 -12.79307 -12.69521 -12.60054 -12.57836 -11.98146 -11.85657 -11.64214 -11.52117 -11.47482 -11.27255 -10.60724 -10.13494 -9.33062 -8.26970 -6.40140 -0.46466 0.22543 1.17683 1.40207 1.41399 1.44861 1.51915 1.55543 1.62956 2.40093 2.73516 3.07685 3.40556 3.53116 3.74781 4.04667 4.19239 4.21298 4.31042 4.35478 4.36894 4.67582 4.84301 5.02843 5.15704 5.19753 5.29557 5.42059 5.45857 5.46412 5.65562 5.72767 5.86173 6.05934 6.16365 6.56880 6.73234 7.17164 7.29613 8.85360 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.025293 B = 0.003547 C = 0.003138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.739589 B = 7891.694772 C = 8920.729487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.008 3.992 3 Si 0.972 3.028 4 H -0.266 1.266 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.552 4.552 8 H 0.065 0.935 9 C 0.031 3.969 10 C 0.091 3.909 11 O -0.352 6.352 12 C 0.507 3.493 13 O -0.542 6.542 14 C -0.180 4.180 15 C -0.042 4.042 16 C -0.141 4.141 17 C -0.045 4.045 18 C -0.158 4.158 19 C 0.212 3.788 20 N -0.645 5.645 21 C 0.669 3.331 22 O -0.581 6.581 23 O -0.510 6.510 24 H 0.268 0.732 25 H 0.009 0.991 26 H 0.007 0.993 27 H 0.061 0.939 28 H 0.065 0.935 29 H 0.146 0.854 30 H 0.169 0.831 31 H 0.172 0.828 32 H 0.154 0.846 33 H 0.429 0.571 34 H 0.453 0.547 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.160 -21.897 -0.619 22.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.191 4.191 3 Si 0.796 3.204 4 H -0.190 1.190 5 H -0.205 1.205 6 H -0.192 1.192 7 C -0.590 4.590 8 H 0.083 0.917 9 C -0.006 4.006 10 C 0.018 3.982 11 O -0.268 6.268 12 C 0.356 3.644 13 O -0.435 6.435 14 C -0.184 4.184 15 C -0.061 4.061 16 C -0.159 4.159 17 C -0.064 4.064 18 C -0.178 4.178 19 C 0.115 3.885 20 N -0.303 5.303 21 C 0.423 3.577 22 O -0.472 6.472 23 O -0.323 6.323 24 H 0.077 0.923 25 H 0.028 0.972 26 H 0.025 0.975 27 H 0.079 0.921 28 H 0.083 0.917 29 H 0.164 0.836 30 H 0.186 0.814 31 H 0.189 0.811 32 H 0.171 0.829 33 H 0.275 0.725 34 H 0.318 0.682 Dipole moment (debyes) X Y Z Total from point charges 3.080 -21.808 -0.557 22.031 hybrid contribution 1.101 1.134 0.189 1.591 sum 4.181 -20.674 -0.368 21.096 Atomic orbital electron populations 1.70084 1.07775 1.28345 1.50259 1.25937 0.95825 1.03321 0.94048 0.85395 0.78212 0.77539 0.79284 1.19030 1.20490 1.19162 1.21344 0.93726 0.91228 1.52685 0.91667 1.18980 0.94341 0.90435 0.96847 1.23246 0.95161 0.78541 1.01268 1.86566 1.41774 1.15465 1.82969 1.21515 0.85378 0.85768 0.71741 1.90523 1.15967 1.87836 1.49176 1.18864 0.95259 0.87287 1.16966 1.21579 0.91115 1.00656 0.92702 1.21549 1.02377 0.90667 1.01339 1.21767 0.92136 1.00633 0.91818 1.21534 0.96458 0.95886 1.03948 1.17667 0.80931 0.93440 0.96477 1.42566 1.05487 1.23710 1.58541 1.17715 0.81652 0.81272 0.77086 1.90998 1.69536 1.37681 1.49033 1.84203 1.17063 1.55108 1.75918 0.92316 0.97234 0.97476 0.92102 0.91712 0.83605 0.81379 0.81082 0.82884 0.72499 0.68241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.91 13.29 21.45 0.28 -54.62 16 2 C 0.01 0.45 5.46 84.65 0.46 0.91 16 3 Si 0.97 43.22 29.54 68.60 2.03 45.25 16 4 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 5 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 6 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 7 C -0.55 -31.00 9.11 25.60 0.23 -30.77 16 8 H 0.07 3.49 7.74 -2.91 -0.02 3.47 16 9 C 0.03 1.65 5.35 29.85 0.16 1.81 16 10 C 0.09 4.03 5.42 71.98 0.39 4.42 16 11 O -0.35 -14.04 9.48 -56.67 -0.54 -14.58 16 12 C 0.51 18.12 7.88 70.22 0.55 18.67 16 13 O -0.54 -20.45 13.55 19.77 0.27 -20.18 16 14 C -0.18 -5.20 5.89 -20.00 -0.12 -5.32 16 15 C -0.04 -0.98 9.61 22.53 0.22 -0.76 16 16 C -0.14 -2.30 10.02 22.24 0.22 -2.08 16 17 C -0.05 -0.71 10.03 22.30 0.22 -0.48 16 18 C -0.16 -3.45 8.70 22.36 0.19 -3.25 16 19 C 0.21 5.68 6.43 38.62 0.25 5.93 16 20 N -0.65 -17.39 4.96 -428.89 -2.13 -19.52 16 21 C 0.67 16.19 8.92 129.79 1.16 17.35 16 22 O -0.58 -15.71 14.31 19.82 0.28 -15.42 16 23 O -0.51 -8.77 13.48 -55.43 -0.75 -9.52 16 24 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 25 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 26 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 27 H 0.06 2.67 8.14 -2.39 -0.02 2.65 16 28 H 0.06 2.80 8.14 -2.39 -0.02 2.78 16 29 H 0.15 3.42 7.62 -2.91 -0.02 3.40 16 30 H 0.17 1.61 8.06 -2.91 -0.02 1.59 16 31 H 0.17 1.37 8.06 -2.91 -0.02 1.35 16 32 H 0.15 3.37 5.81 -2.91 -0.02 3.36 16 33 H 0.43 12.30 5.93 -92.71 -0.55 11.75 16 34 H 0.45 2.73 9.11 -74.06 -0.67 2.05 16 Total: -1.00 -70.86 305.93 3.33 -67.53 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: -0.06 Total: 14.64 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: 3.94 Total: 6.42 kcal Atomic # 7 Polarization: -72.30 SS G_CDS: -1.84 Total: -74.14 kcal Atomic # 8 Polarization: -58.96 SS G_CDS: -0.73 Total: -59.70 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Total: -70.86 3.33 -67.53 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739073705.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.982 kcal (2) G-P(sol) polarization free energy of solvation -70.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds