Wall clock time and date at job start Wed Apr 15 2020 11:43:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31566 * 1 3 3 Si 1.86792 * 120.00001 * 2 1 4 4 H 1.48504 * 109.47313 * 270.00336 * 3 2 1 5 5 H 1.48507 * 109.47288 * 30.00233 * 3 2 1 6 6 H 1.48505 * 109.47050 * 150.00100 * 3 2 1 7 7 C 1.38652 * 119.99675 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00509 * 359.97438 * 7 2 1 9 9 O 1.34831 * 119.99474 * 179.97438 * 7 2 1 10 10 C 1.35758 * 116.99645 * 174.59729 * 9 7 2 11 11 C 1.38952 * 120.02871 * 173.82156 * 10 9 7 12 12 C 1.38129 * 120.06508 * 179.77002 * 11 10 9 13 13 C 1.38201 * 120.14382 * 0.51158 * 12 11 10 14 14 C 1.38920 * 120.06180 * 359.74639 * 13 12 11 15 15 N 1.39924 * 120.03509 * 180.02562 * 14 13 12 16 16 C 1.34767 * 120.00127 * 326.32296 * 15 14 13 17 17 O 1.21291 * 119.99867 * 354.77889 * 16 15 14 18 18 C 1.50702 * 120.00275 * 174.78253 * 16 15 14 19 19 C 1.53003 * 109.47360 * 179.97438 * 18 16 15 20 20 C 1.50697 * 109.47039 * 180.02562 * 19 18 16 21 21 O 1.20828 * 120.00295 * 0.02562 * 20 19 18 22 22 O 1.34232 * 119.99960 * 180.02562 * 20 19 18 23 23 C 1.38728 * 120.03606 * 354.10697 * 10 9 7 24 24 H 0.96992 * 119.99899 * 359.97438 * 1 2 3 25 25 H 1.07996 * 119.97197 * 0.02867 * 11 10 9 26 26 H 1.07999 * 119.92692 * 180.25545 * 12 11 10 27 27 H 1.07990 * 119.97239 * 179.76388 * 13 12 11 28 28 H 0.97000 * 119.99968 * 146.31701 * 15 14 13 29 29 H 1.09001 * 109.47411 * 299.99899 * 18 16 15 30 30 H 1.09001 * 109.47048 * 59.99788 * 18 16 15 31 31 H 1.08991 * 109.47297 * 300.00632 * 19 18 16 32 32 H 1.09005 * 109.46483 * 60.00632 * 19 18 16 33 33 H 0.96695 * 117.00471 * 179.97438 * 22 20 19 34 34 H 1.07998 * 120.06762 * 359.94764 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4471 2.6527 0.7001 6 1 3.5472 1.4401 0.7000 7 6 2.0089 -1.2008 -0.0005 8 1 1.4689 -2.1361 -0.0005 9 8 3.3572 -1.2008 -0.0011 10 6 3.9735 -2.4050 0.1123 11 6 5.3548 -2.4935 -0.0099 12 6 5.9832 -3.7177 0.1101 13 6 5.2398 -4.8596 0.3414 14 6 3.8580 -4.7785 0.4592 15 7 3.1060 -5.9349 0.6939 16 6 3.4983 -7.1121 0.1680 17 8 4.4480 -7.1533 -0.5853 18 6 2.7569 -8.3772 0.5159 19 6 3.4001 -9.5610 -0.2092 20 6 2.6584 -10.8260 0.1382 21 8 1.7120 -10.7848 0.8883 22 8 3.0490 -11.9985 -0.3857 23 6 3.2244 -3.5494 0.3444 24 1 -0.4849 0.8400 0.0004 25 1 5.9382 -1.6036 -0.1947 26 1 7.0573 -3.7833 0.0188 27 1 5.7336 -5.8158 0.4309 28 1 2.3024 -5.8892 1.2353 29 1 2.8034 -8.5413 1.5924 30 1 1.7157 -8.2847 0.2071 31 1 3.3534 -9.3968 -1.2856 32 1 4.4415 -9.6537 0.0994 33 1 2.5426 -12.7826 -0.1333 34 1 2.1503 -3.4836 0.4361 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037794769.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:10 Heat of formation + Delta-G solvation = -131.151901 kcal Electronic energy + Delta-G solvation = -20439.397587 eV Core-core repulsion = 16917.114404 eV Total energy + Delta-G solvation = -3522.283182 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.74489 -40.14661 -38.85185 -36.73627 -36.47294 -34.34451 -33.31114 -32.37514 -29.61553 -28.93557 -26.48380 -25.21620 -22.56598 -21.82565 -21.11564 -19.96010 -18.60336 -17.98994 -17.80290 -17.36256 -16.68973 -16.05797 -15.68841 -15.50148 -15.10253 -14.55423 -14.00994 -13.86279 -13.71300 -13.50370 -13.31934 -13.05498 -12.40279 -12.31714 -12.20044 -11.90096 -11.76004 -11.58504 -11.24723 -11.00225 -10.93214 -10.73832 -10.32424 -10.01641 -9.65410 -9.52394 -8.87628 -7.85283 -7.34000 -6.45109 -4.12552 1.82182 1.86300 2.22833 2.55341 2.73295 3.21333 3.23630 3.31471 3.38649 4.21319 4.25648 4.45665 4.68765 4.72395 4.85175 5.01471 5.05539 5.24461 5.41575 5.54297 5.58874 5.87436 5.92974 6.11945 6.14860 6.15711 6.43758 6.83400 6.86743 7.14330 7.15990 7.49738 7.53302 7.64257 7.73682 7.98811 8.18728 8.90219 9.52164 10.62560 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.028810 B = 0.003304 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.662973 B = 8473.182223 C = 9309.926437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.064 3.936 3 Si 0.906 3.094 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.259 1.259 7 C -0.390 4.390 8 H 0.105 0.895 9 O -0.215 6.215 10 C 0.174 3.826 11 C -0.200 4.200 12 C -0.065 4.065 13 C -0.198 4.198 14 C 0.178 3.822 15 N -0.667 5.667 16 C 0.513 3.487 17 O -0.523 6.523 18 C -0.131 4.131 19 C -0.099 4.099 20 C 0.481 3.519 21 O -0.518 6.518 22 O -0.516 6.516 23 C -0.244 4.244 24 H 0.280 0.720 25 H 0.118 0.882 26 H 0.118 0.882 27 H 0.121 0.879 28 H 0.410 0.590 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.117 0.883 32 H 0.116 0.884 33 H 0.411 0.589 34 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.092 -17.682 1.703 18.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.183 1.183 7 C -0.466 4.466 8 H 0.122 0.878 9 O -0.120 6.120 10 C 0.121 3.879 11 C -0.219 4.219 12 C -0.083 4.083 13 C -0.219 4.219 14 C 0.085 3.915 15 N -0.312 5.312 16 C 0.300 3.700 17 O -0.398 6.398 18 C -0.171 4.171 19 C -0.137 4.137 20 C 0.324 3.676 21 O -0.406 6.406 22 O -0.328 6.328 23 C -0.265 4.265 24 H 0.090 0.910 25 H 0.137 0.863 26 H 0.136 0.864 27 H 0.139 0.861 28 H 0.246 0.754 29 H 0.124 0.876 30 H 0.124 0.876 31 H 0.135 0.865 32 H 0.134 0.866 33 H 0.269 0.731 34 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 6.596 -17.033 1.248 18.308 hybrid contribution -0.803 0.154 0.451 0.934 sum 5.792 -16.879 1.699 17.926 Atomic orbital electron populations 1.69645 1.05577 1.28543 1.47992 1.24470 0.95034 0.98880 0.95589 0.86171 0.80317 0.81349 0.79017 1.19836 1.20837 1.18293 1.20726 0.76895 0.96537 1.52394 0.87798 1.83615 1.22576 1.25357 1.80463 1.18818 0.91405 0.85121 0.92554 1.20258 0.91915 0.98200 1.11557 1.20533 0.98700 0.91387 0.97727 1.20589 0.91738 0.98820 1.10768 1.17426 0.90446 0.84835 0.98768 1.43483 1.28723 1.06894 1.52065 1.20515 0.84700 0.84740 0.80009 1.90741 1.28277 1.86432 1.34368 1.21447 1.01412 0.90914 1.03314 1.21033 1.00993 0.87223 1.04417 1.23510 0.82108 0.85377 0.76615 1.90746 1.28175 1.87114 1.34606 1.84543 1.60601 1.18477 1.69197 1.20944 1.01107 0.91260 1.13211 0.91029 0.86348 0.86402 0.86144 0.75415 0.87565 0.87573 0.86532 0.86590 0.73064 0.84574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.01 13.96 55.48 0.77 -24.24 16 2 C 0.06 1.76 5.49 -17.51 -0.10 1.66 16 3 Si 0.91 21.38 28.61 -169.99 -4.86 16.52 16 4 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.26 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.39 -10.77 9.90 30.89 0.31 -10.46 16 8 H 0.10 2.92 5.53 -52.49 -0.29 2.63 16 9 O -0.22 -5.58 8.58 0.02 0.00 -5.58 16 10 C 0.17 3.95 6.64 -39.14 -0.26 3.69 16 11 C -0.20 -3.93 9.99 -39.36 -0.39 -4.32 16 12 C -0.06 -1.12 10.03 -39.63 -0.40 -1.52 16 13 C -0.20 -3.55 8.65 -39.34 -0.34 -3.89 16 14 C 0.18 3.24 6.27 -83.72 -0.52 2.72 16 15 N -0.67 -9.44 5.34 -9.88 -0.05 -9.49 16 16 C 0.51 6.72 7.56 -10.99 -0.08 6.64 16 17 O -0.52 -8.49 13.69 5.55 0.08 -8.41 16 18 C -0.13 -1.19 4.99 -27.88 -0.14 -1.32 16 19 C -0.10 -0.82 5.10 -27.88 -0.14 -0.96 16 20 C 0.48 4.16 8.33 36.00 0.30 4.46 16 21 O -0.52 -5.93 16.74 -18.75 -0.31 -6.25 16 22 O -0.52 -3.41 13.42 -39.26 -0.53 -3.94 16 23 C -0.24 -5.11 9.05 -39.21 -0.35 -5.47 16 24 H 0.28 7.35 8.31 -40.82 -0.34 7.01 16 25 H 0.12 2.15 8.06 -52.49 -0.42 1.72 16 26 H 0.12 1.67 8.06 -52.49 -0.42 1.25 16 27 H 0.12 2.06 6.43 -52.49 -0.34 1.73 16 28 H 0.41 4.65 8.82 -40.82 -0.36 4.29 16 29 H 0.11 0.84 8.10 -51.93 -0.42 0.42 16 30 H 0.11 0.89 8.10 -51.93 -0.42 0.47 16 31 H 0.12 0.95 8.10 -51.93 -0.42 0.53 16 32 H 0.12 0.90 8.10 -51.93 -0.42 0.48 16 33 H 0.41 1.01 9.10 45.56 0.41 1.42 16 34 H 0.14 2.94 5.71 -52.49 -0.30 2.64 16 LS Contribution 306.11 15.07 4.61 4.61 Total: -1.00 -33.71 306.11 -4.96 -38.67 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -2.54 Total: 6.90 kcal Atomic # 6 Polarization: -6.66 SS G_CDS: -2.13 Total: -8.78 kcal Atomic # 7 Polarization: -34.45 SS G_CDS: 0.72 Total: -33.73 kcal Atomic # 8 Polarization: -23.41 SS G_CDS: -0.76 Total: -24.18 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.86 Total: 16.52 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -33.71 -4.96 -38.67 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037794769.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.487 kcal (2) G-P(sol) polarization free energy of solvation -33.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds