Wall clock time and date at job start Wed Apr 15 2020 11:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31566 * 1 3 3 Si 1.86792 * 120.00001 * 2 1 4 4 H 1.48504 * 109.47313 * 270.00336 * 3 2 1 5 5 H 1.48507 * 109.47288 * 30.00233 * 3 2 1 6 6 H 1.48505 * 109.47050 * 150.00100 * 3 2 1 7 7 C 1.38652 * 119.99675 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00509 * 359.97438 * 7 2 1 9 9 O 1.34831 * 119.99474 * 179.97438 * 7 2 1 10 10 C 1.35758 * 116.99645 * 174.59729 * 9 7 2 11 11 C 1.38952 * 120.02871 * 173.82156 * 10 9 7 12 12 C 1.38129 * 120.06508 * 179.77002 * 11 10 9 13 13 C 1.38201 * 120.14382 * 0.51158 * 12 11 10 14 14 C 1.38920 * 120.06180 * 359.74639 * 13 12 11 15 15 N 1.39924 * 120.03509 * 180.02562 * 14 13 12 16 16 C 1.34767 * 120.00127 * 326.32296 * 15 14 13 17 17 O 1.21291 * 119.99867 * 354.77889 * 16 15 14 18 18 C 1.50702 * 120.00275 * 174.78253 * 16 15 14 19 19 C 1.53003 * 109.47360 * 179.97438 * 18 16 15 20 20 C 1.50697 * 109.47039 * 180.02562 * 19 18 16 21 21 O 1.20828 * 120.00295 * 0.02562 * 20 19 18 22 22 O 1.34232 * 119.99960 * 180.02562 * 20 19 18 23 23 C 1.38728 * 120.03606 * 354.10697 * 10 9 7 24 24 H 0.96992 * 119.99899 * 359.97438 * 1 2 3 25 25 H 1.07996 * 119.97197 * 0.02867 * 11 10 9 26 26 H 1.07999 * 119.92692 * 180.25545 * 12 11 10 27 27 H 1.07990 * 119.97239 * 179.76388 * 13 12 11 28 28 H 0.97000 * 119.99968 * 146.31701 * 15 14 13 29 29 H 1.09001 * 109.47411 * 299.99899 * 18 16 15 30 30 H 1.09001 * 109.47048 * 59.99788 * 18 16 15 31 31 H 1.08991 * 109.47297 * 300.00632 * 19 18 16 32 32 H 1.09005 * 109.46483 * 60.00632 * 19 18 16 33 33 H 0.96695 * 117.00471 * 179.97438 * 22 20 19 34 34 H 1.07998 * 120.06762 * 359.94764 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4471 2.6527 0.7001 6 1 3.5472 1.4401 0.7000 7 6 2.0089 -1.2008 -0.0005 8 1 1.4689 -2.1361 -0.0005 9 8 3.3572 -1.2008 -0.0011 10 6 3.9735 -2.4050 0.1123 11 6 5.3548 -2.4935 -0.0099 12 6 5.9832 -3.7177 0.1101 13 6 5.2398 -4.8596 0.3414 14 6 3.8580 -4.7785 0.4592 15 7 3.1060 -5.9349 0.6939 16 6 3.4983 -7.1121 0.1680 17 8 4.4480 -7.1533 -0.5853 18 6 2.7569 -8.3772 0.5159 19 6 3.4001 -9.5610 -0.2092 20 6 2.6584 -10.8260 0.1382 21 8 1.7120 -10.7848 0.8883 22 8 3.0490 -11.9985 -0.3857 23 6 3.2244 -3.5494 0.3444 24 1 -0.4849 0.8400 0.0004 25 1 5.9382 -1.6036 -0.1947 26 1 7.0573 -3.7833 0.0188 27 1 5.7336 -5.8158 0.4309 28 1 2.3024 -5.8892 1.2353 29 1 2.8034 -8.5413 1.5924 30 1 1.7157 -8.2847 0.2071 31 1 3.3534 -9.3968 -1.2856 32 1 4.4415 -9.6537 0.0994 33 1 2.5426 -12.7826 -0.1333 34 1 2.1503 -3.4836 0.4361 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037794769.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:09 Heat of formation + Delta-G solvation = -155.484284 kcal Electronic energy + Delta-G solvation = -20440.452718 eV Core-core repulsion = 16917.114404 eV Total energy + Delta-G solvation = -3523.338314 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.73270 -41.15811 -40.40398 -38.26390 -37.15176 -35.67748 -34.41837 -34.09575 -31.11191 -30.46347 -27.54102 -27.00657 -23.75107 -23.41342 -22.07176 -21.15181 -19.90053 -19.37197 -19.20747 -18.31835 -17.45717 -17.29509 -16.97613 -16.79825 -16.38215 -16.11378 -15.70011 -15.47010 -15.03396 -14.60762 -14.41695 -14.20398 -14.10170 -13.88538 -13.30077 -13.12357 -12.78365 -12.75213 -12.54056 -12.40004 -12.26788 -12.08049 -11.66106 -11.55345 -11.27597 -10.98092 -10.78422 -9.40237 -8.92977 -8.49668 -6.22551 0.36727 0.65114 1.20295 1.33663 1.37379 1.53394 1.56409 1.78858 2.28988 2.38474 2.77330 3.10172 3.11435 3.49101 3.82630 4.02803 4.13887 4.31560 4.39933 4.43227 4.59519 4.62115 4.72141 4.74643 4.89141 4.92454 5.35070 5.38762 5.48181 5.62599 5.63818 5.75779 5.89320 6.20836 6.41882 6.84827 6.99728 7.06081 7.58196 8.61688 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.028810 B = 0.003304 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.662973 B = 8473.182223 C = 9309.926437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.012 3.988 3 Si 0.969 3.031 4 H -0.267 1.267 5 H -0.269 1.269 6 H -0.261 1.261 7 C -0.398 4.398 8 H 0.082 0.918 9 O -0.240 6.240 10 C 0.139 3.861 11 C -0.203 4.203 12 C -0.053 4.053 13 C -0.191 4.191 14 C 0.181 3.819 15 N -0.666 5.666 16 C 0.516 3.484 17 O -0.551 6.551 18 C -0.120 4.120 19 C -0.098 4.098 20 C 0.491 3.509 21 O -0.549 6.549 22 O -0.513 6.513 23 C -0.257 4.257 24 H 0.284 0.716 25 H 0.133 0.867 26 H 0.161 0.839 27 H 0.136 0.864 28 H 0.423 0.577 29 H 0.124 0.876 30 H 0.116 0.884 31 H 0.118 0.882 32 H 0.124 0.876 33 H 0.429 0.571 34 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.096 -19.150 1.852 20.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.187 4.187 3 Si 0.792 3.208 4 H -0.192 1.192 5 H -0.194 1.194 6 H -0.185 1.185 7 C -0.474 4.474 8 H 0.099 0.901 9 O -0.148 6.148 10 C 0.089 3.911 11 C -0.222 4.222 12 C -0.071 4.071 13 C -0.212 4.212 14 C 0.087 3.913 15 N -0.311 5.311 16 C 0.306 3.694 17 O -0.429 6.429 18 C -0.159 4.159 19 C -0.135 4.135 20 C 0.336 3.664 21 O -0.440 6.440 22 O -0.327 6.327 23 C -0.278 4.278 24 H 0.094 0.906 25 H 0.151 0.849 26 H 0.178 0.822 27 H 0.154 0.846 28 H 0.261 0.739 29 H 0.142 0.858 30 H 0.134 0.866 31 H 0.136 0.864 32 H 0.142 0.858 33 H 0.291 0.709 34 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 8.606 -18.574 1.404 20.519 hybrid contribution -1.267 0.260 0.393 1.352 sum 7.340 -18.313 1.796 19.811 Atomic orbital electron populations 1.69725 1.06871 1.29597 1.50072 1.25259 0.95857 1.02112 0.95483 0.85232 0.78877 0.77478 0.79255 1.19180 1.19379 1.18531 1.20676 0.78041 0.96069 1.52628 0.90073 1.83557 1.21268 1.27033 1.82902 1.19382 0.92898 0.84760 0.94067 1.20564 0.90649 0.99938 1.11094 1.21004 1.00763 0.89977 0.95344 1.20950 0.91510 0.99739 1.08955 1.17511 0.91155 0.85173 0.97496 1.43562 1.29023 1.06194 1.52324 1.21185 0.84241 0.85156 0.78819 1.90721 1.29748 1.86830 1.35593 1.21413 1.01202 0.88814 1.04487 1.21016 1.01299 0.86830 1.04389 1.23419 0.81317 0.85871 0.75831 1.90746 1.29548 1.87613 1.36135 1.84499 1.60752 1.18782 1.68681 1.20925 1.00359 0.92361 1.14205 0.90589 0.84860 0.82180 0.84626 0.73943 0.85830 0.86590 0.86381 0.85774 0.70882 0.86370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.21 13.96 21.61 0.30 -53.91 16 2 C 0.01 0.65 5.49 84.83 0.47 1.12 16 3 Si 0.97 44.77 28.61 68.60 1.96 46.73 16 4 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 5 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 6 H -0.26 -12.00 7.11 99.48 0.71 -11.29 16 7 C -0.40 -22.96 9.90 67.92 0.67 -22.29 16 8 H 0.08 4.88 5.53 -2.91 -0.02 4.86 16 9 O -0.24 -12.81 8.58 -22.84 -0.20 -13.01 16 10 C 0.14 6.40 6.64 22.56 0.15 6.55 16 11 C -0.20 -7.69 9.99 22.42 0.22 -7.47 16 12 C -0.05 -1.66 10.03 22.24 0.22 -1.44 16 13 C -0.19 -6.33 8.65 22.42 0.19 -6.14 16 14 C 0.18 6.42 6.27 38.14 0.24 6.66 16 15 N -0.67 -18.00 5.34 -303.56 -1.62 -19.62 16 16 C 0.52 12.50 7.56 87.66 0.66 13.16 16 17 O -0.55 -16.71 13.69 -3.07 -0.04 -16.75 16 18 C -0.12 -1.89 4.99 29.85 0.15 -1.74 16 19 C -0.10 -1.38 5.10 29.85 0.15 -1.23 16 20 C 0.49 7.40 8.33 71.23 0.59 8.00 16 21 O -0.55 -11.57 16.74 21.96 0.37 -11.21 16 22 O -0.51 -5.53 13.42 -51.43 -0.69 -6.22 16 23 C -0.26 -11.02 9.05 22.51 0.20 -10.82 16 24 H 0.28 15.37 8.31 -92.71 -0.77 14.60 16 25 H 0.13 4.59 8.06 -2.91 -0.02 4.56 16 26 H 0.16 3.73 8.06 -2.91 -0.02 3.71 16 27 H 0.14 4.18 6.43 -2.92 -0.02 4.16 16 28 H 0.42 9.23 8.82 -92.71 -0.82 8.42 16 29 H 0.12 1.60 8.10 -2.39 -0.02 1.58 16 30 H 0.12 1.68 8.10 -2.39 -0.02 1.66 16 31 H 0.12 1.68 8.10 -2.39 -0.02 1.66 16 32 H 0.12 1.59 8.10 -2.38 -0.02 1.57 16 33 H 0.43 1.07 9.10 -74.06 -0.67 0.39 16 34 H 0.12 5.44 5.71 -2.91 -0.02 5.42 16 Total: -1.00 -74.14 306.11 3.70 -70.45 By element: Atomic # 1 Polarization: 19.48 SS G_CDS: -0.32 Total: 19.17 kcal Atomic # 6 Polarization: -19.56 SS G_CDS: 3.93 Total: -15.63 kcal Atomic # 7 Polarization: -72.21 SS G_CDS: -1.32 Total: -73.53 kcal Atomic # 8 Polarization: -46.62 SS G_CDS: -0.56 Total: -47.18 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 1.96 Total: 46.73 kcal Total: -74.14 3.70 -70.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037794769.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.037 kcal (2) G-P(sol) polarization free energy of solvation -74.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds