Wall clock time and date at job start Wed Apr 15 2020 11:43:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86801 * 120.00242 * 2 1 4 4 H 1.48497 * 109.46817 * 269.99488 * 3 2 1 5 5 H 1.48493 * 109.47173 * 29.99631 * 3 2 1 6 6 H 1.48502 * 109.46877 * 149.99704 * 3 2 1 7 7 C 1.39932 * 119.99727 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00114 * 196.79273 * 7 2 1 9 9 C 1.41412 * 119.99965 * 16.80192 * 7 2 1 10 10 C 1.40772 * 120.21144 * 25.15618 * 9 7 2 11 11 C 1.37649 * 119.88992 * 180.02562 * 10 9 7 12 12 C 1.38529 * 120.31614 * 0.02752 * 11 10 9 13 13 C 1.39248 * 120.43103 * 359.95364 * 12 11 10 14 14 N 1.39936 * 119.94815 * 180.02562 * 13 12 11 15 15 C 1.34775 * 120.00740 * 145.79320 * 14 13 12 16 16 O 1.21286 * 119.99266 * 354.88594 * 15 14 13 17 17 C 1.50692 * 120.00382 * 174.88928 * 15 14 13 18 18 O 1.42897 * 109.47215 * 179.97438 * 17 15 14 19 19 C 1.42903 * 114.00317 * 179.97438 * 18 17 15 20 20 C 1.50695 * 109.47177 * 179.97438 * 19 18 17 21 21 O 1.20827 * 120.00207 * 0.02562 * 20 19 18 22 22 O 1.34233 * 119.99820 * 179.97438 * 20 19 18 23 23 C 1.38283 * 120.10838 * 0.27537 * 13 12 11 24 24 H 0.97007 * 119.99304 * 0.02562 * 1 2 3 25 25 H 1.08007 * 120.05672 * 0.02562 * 10 9 7 26 26 H 1.07994 * 119.84251 * 180.02562 * 11 10 9 27 27 H 1.08004 * 119.78460 * 179.97438 * 12 11 10 28 28 H 0.97005 * 119.99387 * 325.78781 * 14 13 12 29 29 H 1.09002 * 109.47554 * 59.99778 * 17 15 14 30 30 H 1.08998 * 109.46871 * 299.99372 * 17 15 14 31 31 H 1.09001 * 109.47375 * 299.99970 * 19 18 17 32 32 H 1.08996 * 109.46805 * 59.99962 * 19 18 17 33 33 H 0.96701 * 116.99638 * 180.02562 * 22 20 19 34 34 H 1.07992 * 120.16487 * 179.72416 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.4900 2.0462 -1.4001 5 1 1.4399 2.6526 0.6999 6 1 3.5399 1.4400 0.7001 7 6 2.0079 -1.2119 0.0005 8 1 3.0534 -1.2318 0.2708 9 6 1.3461 -2.4105 -0.3529 10 6 0.2108 -2.3741 -1.1845 11 6 -0.4287 -3.5449 -1.5239 12 6 0.0393 -4.7598 -1.0507 13 6 1.1613 -4.8113 -0.2277 14 7 1.6256 -6.0441 0.2442 15 6 2.9472 -6.2464 0.4141 16 8 3.7399 -5.3949 0.0712 17 6 3.4399 -7.5305 1.0299 18 8 4.8669 -7.5073 1.1022 19 6 5.4392 -8.6850 1.6747 20 6 6.9401 -8.5526 1.7006 21 8 7.4658 -7.5521 1.2732 22 8 7.6929 -9.5457 2.1994 23 6 1.8145 -3.6456 0.1283 24 1 -0.4849 0.8402 -0.0004 25 1 -0.1579 -1.4292 -1.5555 26 1 -1.2993 -3.5161 -2.1622 27 1 -0.4693 -5.6731 -1.3221 28 1 0.9961 -6.7532 0.4492 29 1 3.1212 -8.3734 0.4167 30 1 3.0267 -7.6343 2.0332 31 1 5.0677 -8.8122 2.6915 32 1 5.1616 -9.5520 1.0753 33 1 8.6510 -9.4148 2.1952 34 1 2.6821 -3.6840 0.7702 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313408022.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:15 Heat of formation + Delta-G solvation = -141.801004 kcal Electronic energy + Delta-G solvation = -20475.468612 eV Core-core repulsion = 16952.723650 eV Total energy + Delta-G solvation = -3522.744962 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.50010 -39.75728 -37.97671 -36.92116 -36.24873 -34.44057 -33.04274 -30.16435 -29.80652 -28.50983 -26.58646 -25.26481 -22.08392 -21.71246 -20.85696 -19.71637 -18.44882 -17.79327 -17.39182 -17.00357 -16.68556 -16.10465 -15.69019 -15.36993 -15.00958 -14.60345 -14.21348 -14.15344 -13.36612 -13.13113 -12.85142 -12.53692 -12.26577 -12.06374 -11.78451 -11.63382 -11.17620 -11.11141 -10.88907 -10.71553 -10.43635 -10.16664 -10.12171 -9.64386 -9.40203 -9.05944 -8.95951 -7.43758 -6.92272 -6.69549 -4.31582 1.93282 2.13242 2.56728 2.85228 3.12185 3.17834 3.20797 3.23957 3.38728 3.99526 4.12955 4.60175 4.66066 4.70069 4.82271 4.92462 4.98472 5.04674 5.73491 6.18611 6.24451 6.39338 6.53093 6.74037 7.02770 7.05296 7.09392 7.27533 7.56909 7.62674 7.73118 7.97287 8.12029 8.16042 8.27180 8.62933 8.73013 8.96165 9.00192 10.23790 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.020892 B = 0.003619 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.913774 B = 7735.869052 C = 8923.739347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.076 3.924 3 Si 0.909 3.091 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.458 4.458 8 H 0.079 0.921 9 C 0.120 3.880 10 C -0.171 4.171 11 C -0.093 4.093 12 C -0.261 4.261 13 C 0.152 3.848 14 N -0.666 5.666 15 C 0.502 3.498 16 O -0.489 6.489 17 C 0.048 3.952 18 O -0.341 6.341 19 C 0.070 3.930 20 C 0.476 3.524 21 O -0.483 6.483 22 O -0.518 6.518 23 C -0.211 4.211 24 H 0.280 0.720 25 H 0.119 0.881 26 H 0.092 0.908 27 H 0.089 0.911 28 H 0.398 0.602 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.416 0.584 34 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.689 -17.436 4.575 18.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.142 4.142 3 Si 0.734 3.266 4 H -0.192 1.192 5 H -0.204 1.204 6 H -0.185 1.185 7 C -0.487 4.487 8 H 0.097 0.903 9 C 0.117 3.883 10 C -0.191 4.191 11 C -0.112 4.112 12 C -0.283 4.283 13 C 0.061 3.939 14 N -0.313 5.313 15 C 0.286 3.714 16 O -0.361 6.361 17 C -0.032 4.032 18 O -0.259 6.259 19 C -0.007 4.007 20 C 0.315 3.685 21 O -0.368 6.368 22 O -0.332 6.332 23 C -0.232 4.232 24 H 0.090 0.910 25 H 0.137 0.863 26 H 0.110 0.890 27 H 0.108 0.892 28 H 0.232 0.768 29 H 0.102 0.898 30 H 0.103 0.897 31 H 0.114 0.886 32 H 0.114 0.886 33 H 0.276 0.724 34 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 4.959 -16.267 4.185 17.513 hybrid contribution 0.409 0.156 0.253 0.505 sum 5.368 -16.111 4.438 17.552 Atomic orbital electron populations 1.69832 1.07531 1.29106 1.35651 1.25906 0.94747 1.01297 0.92207 0.86292 0.80551 0.80432 0.79353 1.19249 1.20365 1.18544 1.19622 0.97872 0.90938 1.40306 0.90262 1.17491 0.90870 0.91621 0.88307 1.21362 0.99316 0.96903 1.01487 1.20460 0.98548 0.92697 0.99455 1.20019 1.02412 0.96927 1.08899 1.17387 0.96193 0.83057 0.97299 1.43279 1.06371 1.15474 1.66127 1.20036 0.82869 0.88299 0.80216 1.90828 1.54243 1.44465 1.46563 1.22302 0.81728 0.97516 1.01682 1.88117 1.18589 1.36614 1.82573 1.21621 0.87557 0.90359 1.01208 1.22850 0.90480 0.80538 0.74589 1.90831 1.74163 1.30100 1.41670 1.84434 1.25252 1.46421 1.77080 1.20996 1.04325 0.91033 1.06850 0.90953 0.86276 0.88998 0.89249 0.76777 0.89850 0.89650 0.88559 0.88621 0.72442 0.87607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.94 10.94 55.55 0.61 -20.33 16 2 C 0.08 1.97 5.16 -17.34 -0.09 1.88 16 3 Si 0.91 19.51 29.59 -169.99 -5.03 14.48 16 4 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 5 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 6 H -0.26 -5.63 7.11 56.52 0.40 -5.22 16 7 C -0.46 -12.85 9.05 -37.74 -0.34 -13.19 16 8 H 0.08 2.21 7.90 -52.49 -0.41 1.80 16 9 C 0.12 3.36 5.57 -106.85 -0.59 2.77 16 10 C -0.17 -4.54 8.69 -38.84 -0.34 -4.88 16 11 C -0.09 -2.17 10.02 -39.69 -0.40 -2.57 16 12 C -0.26 -5.72 9.97 -39.10 -0.39 -6.11 16 13 C 0.15 3.45 6.25 -83.77 -0.52 2.92 16 14 N -0.67 -11.49 5.34 -9.91 -0.05 -11.54 16 15 C 0.50 8.96 7.63 -10.99 -0.08 8.88 16 16 O -0.49 -11.73 14.25 -14.36 -0.20 -11.93 16 17 C 0.05 0.54 6.42 36.00 0.23 0.77 16 18 O -0.34 -4.84 9.41 -64.76 -0.61 -5.45 16 19 C 0.07 0.61 6.53 36.00 0.24 0.85 16 20 C 0.48 5.12 8.40 36.00 0.30 5.43 16 21 O -0.48 -7.80 17.26 -25.48 -0.44 -8.24 16 22 O -0.52 -3.59 13.42 -39.27 -0.53 -4.11 16 23 C -0.21 -5.57 8.39 -38.68 -0.32 -5.89 16 24 H 0.28 6.67 8.30 -40.82 -0.34 6.33 16 25 H 0.12 3.24 6.17 -52.48 -0.32 2.91 16 26 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 27 H 0.09 1.66 8.06 -52.48 -0.42 1.24 16 28 H 0.40 4.91 8.82 -40.82 -0.36 4.55 16 29 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.42 1.27 9.10 45.56 0.41 1.68 16 34 H 0.11 2.91 6.48 -52.49 -0.34 2.57 16 LS Contribution 309.05 15.07 4.66 4.66 Total: -1.00 -37.61 309.05 -6.61 -44.22 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -2.69 Total: 7.39 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: -2.31 Total: -9.15 kcal Atomic # 7 Polarization: -32.43 SS G_CDS: 0.55 Total: -31.87 kcal Atomic # 8 Polarization: -27.95 SS G_CDS: -1.78 Total: -29.73 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.03 Total: 14.48 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -37.61 -6.61 -44.22 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313408022.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.580 kcal (2) G-P(sol) polarization free energy of solvation -37.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds