Wall clock time and date at job start Wed Apr 15 2020 11:43:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86801 * 120.00242 * 2 1 4 4 H 1.48497 * 109.46817 * 269.99488 * 3 2 1 5 5 H 1.48493 * 109.47173 * 29.99631 * 3 2 1 6 6 H 1.48502 * 109.46877 * 149.99704 * 3 2 1 7 7 C 1.39932 * 119.99727 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00114 * 196.79273 * 7 2 1 9 9 C 1.41412 * 119.99965 * 16.80192 * 7 2 1 10 10 C 1.40772 * 120.21144 * 25.15618 * 9 7 2 11 11 C 1.37649 * 119.88992 * 180.02562 * 10 9 7 12 12 C 1.38529 * 120.31614 * 0.02752 * 11 10 9 13 13 C 1.39248 * 120.43103 * 359.95364 * 12 11 10 14 14 N 1.39936 * 119.94815 * 180.02562 * 13 12 11 15 15 C 1.34775 * 120.00740 * 145.79320 * 14 13 12 16 16 O 1.21286 * 119.99266 * 354.88594 * 15 14 13 17 17 C 1.50692 * 120.00382 * 174.88928 * 15 14 13 18 18 O 1.42897 * 109.47215 * 179.97438 * 17 15 14 19 19 C 1.42903 * 114.00317 * 179.97438 * 18 17 15 20 20 C 1.50695 * 109.47177 * 179.97438 * 19 18 17 21 21 O 1.20827 * 120.00207 * 0.02562 * 20 19 18 22 22 O 1.34233 * 119.99820 * 179.97438 * 20 19 18 23 23 C 1.38283 * 120.10838 * 0.27537 * 13 12 11 24 24 H 0.97007 * 119.99304 * 0.02562 * 1 2 3 25 25 H 1.08007 * 120.05672 * 0.02562 * 10 9 7 26 26 H 1.07994 * 119.84251 * 180.02562 * 11 10 9 27 27 H 1.08004 * 119.78460 * 179.97438 * 12 11 10 28 28 H 0.97005 * 119.99387 * 325.78781 * 14 13 12 29 29 H 1.09002 * 109.47554 * 59.99778 * 17 15 14 30 30 H 1.08998 * 109.46871 * 299.99372 * 17 15 14 31 31 H 1.09001 * 109.47375 * 299.99970 * 19 18 17 32 32 H 1.08996 * 109.46805 * 59.99962 * 19 18 17 33 33 H 0.96701 * 116.99638 * 180.02562 * 22 20 19 34 34 H 1.07992 * 120.16487 * 179.72416 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.4900 2.0462 -1.4001 5 1 1.4399 2.6526 0.6999 6 1 3.5399 1.4400 0.7001 7 6 2.0079 -1.2119 0.0005 8 1 3.0534 -1.2318 0.2708 9 6 1.3461 -2.4105 -0.3529 10 6 0.2108 -2.3741 -1.1845 11 6 -0.4287 -3.5449 -1.5239 12 6 0.0393 -4.7598 -1.0507 13 6 1.1613 -4.8113 -0.2277 14 7 1.6256 -6.0441 0.2442 15 6 2.9472 -6.2464 0.4141 16 8 3.7399 -5.3949 0.0712 17 6 3.4399 -7.5305 1.0299 18 8 4.8669 -7.5073 1.1022 19 6 5.4392 -8.6850 1.6747 20 6 6.9401 -8.5526 1.7006 21 8 7.4658 -7.5521 1.2732 22 8 7.6929 -9.5457 2.1994 23 6 1.8145 -3.6456 0.1283 24 1 -0.4849 0.8402 -0.0004 25 1 -0.1579 -1.4292 -1.5555 26 1 -1.2993 -3.5161 -2.1622 27 1 -0.4693 -5.6731 -1.3221 28 1 0.9961 -6.7532 0.4492 29 1 3.1212 -8.3734 0.4167 30 1 3.0267 -7.6343 2.0332 31 1 5.0677 -8.8122 2.6915 32 1 5.1616 -9.5520 1.0753 33 1 8.6510 -9.4148 2.1952 34 1 2.6821 -3.6840 0.7702 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313408022.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:15 Heat of formation + Delta-G solvation = -170.953565 kcal Electronic energy + Delta-G solvation = -20476.732762 eV Core-core repulsion = 16952.723650 eV Total energy + Delta-G solvation = -3524.009112 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.40524 -41.12491 -39.25954 -38.36761 -37.06519 -36.20287 -34.85718 -31.76123 -31.26161 -29.81988 -27.78853 -27.22042 -23.37891 -22.79090 -22.71187 -21.30083 -19.63558 -19.17684 -18.52410 -17.77929 -17.70670 -17.44641 -17.01627 -16.65863 -16.58670 -16.41981 -15.54191 -15.41374 -14.87401 -14.67209 -14.27481 -13.96901 -13.54781 -13.29783 -13.15807 -12.98065 -12.92162 -12.77998 -12.59970 -12.19345 -11.96603 -11.58784 -11.53099 -11.17406 -10.91588 -10.86486 -10.64354 -9.40649 -8.77046 -8.62234 -6.39030 0.84412 0.98638 1.15347 1.34385 1.40147 1.47209 1.47865 1.77456 2.19366 2.22550 2.71717 3.22466 3.66791 3.76558 4.12719 4.21103 4.21876 4.32870 4.35557 4.47121 4.63763 5.03659 5.08965 5.11331 5.21736 5.31854 5.56349 5.72386 5.82871 5.91641 6.07218 6.10382 6.33764 6.65046 6.68709 6.92350 6.96617 6.99859 7.34835 8.31552 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.020892 B = 0.003619 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.913774 B = 7735.869052 C = 8923.739347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.039 3.961 3 Si 0.981 3.019 4 H -0.260 1.260 5 H -0.258 1.258 6 H -0.268 1.268 7 C -0.507 4.507 8 H 0.058 0.942 9 C 0.088 3.912 10 C -0.198 4.198 11 C -0.091 4.091 12 C -0.246 4.246 13 C 0.159 3.841 14 N -0.651 5.651 15 C 0.491 3.509 16 O -0.563 6.563 17 C 0.060 3.940 18 O -0.396 6.396 19 C 0.066 3.934 20 C 0.479 3.521 21 O -0.553 6.553 22 O -0.502 6.502 23 C -0.241 4.241 24 H 0.290 0.710 25 H 0.104 0.896 26 H 0.126 0.874 27 H 0.139 0.861 28 H 0.427 0.573 29 H 0.136 0.864 30 H 0.129 0.871 31 H 0.135 0.865 32 H 0.138 0.862 33 H 0.432 0.568 34 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.247 -20.492 4.929 21.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.175 4.175 3 Si 0.801 3.199 4 H -0.184 1.184 5 H -0.182 1.182 6 H -0.192 1.192 7 C -0.536 4.536 8 H 0.076 0.924 9 C 0.085 3.915 10 C -0.218 4.218 11 C -0.110 4.110 12 C -0.267 4.267 13 C 0.065 3.935 14 N -0.300 5.300 15 C 0.279 3.721 16 O -0.440 6.440 17 C -0.018 4.018 18 O -0.316 6.316 19 C -0.010 4.010 20 C 0.322 3.678 21 O -0.443 6.443 22 O -0.316 6.316 23 C -0.263 4.263 24 H 0.101 0.899 25 H 0.122 0.878 26 H 0.144 0.856 27 H 0.157 0.843 28 H 0.266 0.734 29 H 0.153 0.847 30 H 0.147 0.853 31 H 0.152 0.848 32 H 0.155 0.845 33 H 0.294 0.706 34 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.479 -19.433 4.575 20.265 hybrid contribution 0.856 0.844 0.170 1.215 sum 4.335 -18.589 4.745 19.668 Atomic orbital electron populations 1.69850 1.08589 1.30567 1.35613 1.26661 0.95632 1.04087 0.91168 0.85240 0.78861 0.76084 0.79694 1.18412 1.18216 1.19231 1.19743 0.97401 0.92950 1.43535 0.92380 1.17827 0.92027 0.92311 0.89287 1.21326 0.99953 0.97799 1.02746 1.20874 0.98933 0.92170 0.99032 1.20511 1.01357 0.98222 1.06618 1.17481 0.95557 0.84176 0.96239 1.43152 1.07307 1.14216 1.65289 1.21444 0.82106 0.89913 0.78606 1.90811 1.56030 1.47570 1.49570 1.22390 0.80903 0.94309 1.04197 1.88040 1.20051 1.39800 1.83685 1.22035 0.85527 0.89617 1.03818 1.23503 0.91827 0.79708 0.72789 1.90818 1.75549 1.32870 1.45059 1.84407 1.26657 1.44731 1.75834 1.20949 1.04536 0.92628 1.08172 0.89922 0.87768 0.85630 0.84347 0.73369 0.84684 0.85336 0.84788 0.84453 0.70556 0.90364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.56 10.94 21.82 0.24 -44.32 16 2 C 0.04 2.14 5.16 85.25 0.44 2.58 16 3 Si 0.98 41.48 29.59 68.60 2.03 43.51 16 4 H -0.26 -10.57 7.11 99.48 0.71 -9.87 16 5 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 6 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 7 C -0.51 -30.56 9.05 23.46 0.21 -30.35 16 8 H 0.06 3.57 7.90 -2.91 -0.02 3.55 16 9 C 0.09 5.23 5.57 -21.31 -0.12 5.11 16 10 C -0.20 -10.86 8.69 22.75 0.20 -10.66 16 11 C -0.09 -4.16 10.02 22.20 0.22 -3.94 16 12 C -0.25 -10.11 9.97 22.58 0.23 -9.89 16 13 C 0.16 7.11 6.25 38.10 0.24 7.34 16 14 N -0.65 -20.98 5.34 -303.66 -1.62 -22.60 16 15 C 0.49 17.05 7.63 87.65 0.67 17.72 16 16 O -0.56 -28.22 14.25 15.99 0.23 -27.99 16 17 C 0.06 1.14 6.42 71.23 0.46 1.60 16 18 O -0.40 -10.50 9.41 -120.75 -1.14 -11.63 16 19 C 0.07 0.92 6.53 71.23 0.47 1.38 16 20 C 0.48 9.70 8.40 71.23 0.60 10.29 16 21 O -0.55 -18.45 17.26 28.39 0.49 -17.96 16 22 O -0.50 -5.83 13.42 -51.44 -0.69 -6.52 16 23 C -0.24 -13.43 8.39 22.85 0.19 -13.24 16 24 H 0.29 14.06 8.30 -92.70 -0.77 13.29 16 25 H 0.10 5.90 6.17 -2.91 -0.02 5.88 16 26 H 0.13 4.80 8.06 -2.91 -0.02 4.78 16 27 H 0.14 4.35 8.06 -2.91 -0.02 4.33 16 28 H 0.43 8.60 8.82 -92.70 -0.82 7.79 16 29 H 0.14 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.13 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.13 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.14 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.43 1.97 9.10 -74.06 -0.67 1.29 16 34 H 0.08 4.69 6.48 -2.91 -0.02 4.67 16 Total: -1.00 -92.86 309.05 3.01 -89.85 By element: Atomic # 1 Polarization: 20.03 SS G_CDS: -0.32 Total: 19.71 kcal Atomic # 6 Polarization: -25.85 SS G_CDS: 3.80 Total: -22.05 kcal Atomic # 7 Polarization: -65.54 SS G_CDS: -1.38 Total: -66.92 kcal Atomic # 8 Polarization: -62.99 SS G_CDS: -1.11 Total: -64.09 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 2.03 Total: 43.51 kcal Total: -92.86 3.01 -89.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313408022.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.106 kcal (2) G-P(sol) polarization free energy of solvation -92.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds