Wall clock time and date at job start Wed Apr 15 2020 11:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 O 1.42904 * 112.94794 * 48.40868 * 9 7 2 11 11 C 1.53953 * 113.74304 * 276.67772 * 9 7 2 12 12 N 1.47582 * 86.11558 * 222.04955 * 11 9 7 13 13 C 1.34773 * 134.48982 * 204.63927 * 12 11 9 14 14 O 1.21629 * 120.00074 * 179.97438 * 13 12 11 15 15 C 1.47238 * 120.00405 * 359.97438 * 13 12 11 16 16 C 1.40257 * 120.23225 * 89.72122 * 15 13 12 17 17 O 1.35655 * 120.12135 * 359.97438 * 16 15 13 18 18 C 1.38553 * 119.74994 * 179.72341 * 16 15 13 19 19 C 1.38242 * 120.23707 * 0.55688 * 18 16 15 20 20 C 1.38240 * 120.48706 * 359.71936 * 19 18 16 21 21 C 1.38550 * 120.23492 * 359.97438 * 20 19 18 22 22 O 1.35662 * 120.12100 * 179.97438 * 21 20 19 23 23 C 1.47581 * 91.01664 * 24.63711 * 12 11 9 24 24 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 25 25 H 0.96699 * 113.99284 * 309.66953 * 10 9 7 26 26 H 1.09002 * 113.76657 * 336.34627 * 11 9 7 27 27 H 1.08991 * 113.76978 * 107.74459 * 11 9 7 28 28 H 0.96703 * 114.00322 * 90.00218 * 17 16 15 29 29 H 1.07998 * 119.87526 * 180.27680 * 18 16 15 30 30 H 1.07998 * 119.75367 * 179.69318 * 19 18 16 31 31 H 1.07996 * 119.88263 * 180.02562 * 20 19 18 32 32 H 0.96705 * 114.00051 * 270.02480 * 22 21 20 33 33 H 1.09001 * 113.77016 * 221.05654 * 23 12 11 34 34 H 1.09005 * 113.86980 * 89.67729 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 0.2156 -2.5447 -0.9843 11 6 0.7997 -2.9543 1.3992 12 7 1.2211 -4.3068 0.9853 13 6 0.8828 -5.5570 1.3583 14 8 1.4111 -6.5144 0.8258 15 6 -0.1262 -5.7638 2.4104 16 6 -1.4839 -5.8716 2.0754 17 8 -1.8742 -5.7852 0.7791 18 6 -2.4244 -6.0718 3.0729 19 6 -2.0299 -6.1539 4.3953 20 6 -0.6950 -6.0433 4.7371 21 6 0.2629 -5.8491 3.7551 22 8 1.5722 -5.7402 4.0932 23 6 2.1615 -3.7405 -0.0011 24 1 -0.4850 0.8401 0.0004 25 1 -0.3764 -1.7802 -0.9678 26 1 1.3966 -2.5373 2.2104 27 1 -0.2731 -2.8605 1.5670 28 1 -1.8968 -6.6347 0.3176 29 1 -3.4699 -6.1596 2.8168 30 1 -2.7701 -6.3052 5.1670 31 1 -0.3976 -6.1093 5.7732 32 1 1.8580 -4.8341 4.2731 33 1 2.1758 -4.2745 -0.9513 34 1 3.1590 -3.5540 0.3970 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000436925654.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:23 Heat of formation + Delta-G solvation = -100.020887 kcal Electronic energy + Delta-G solvation = -22100.747238 eV Core-core repulsion = 18579.813998 eV Total energy + Delta-G solvation = -3520.933240 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.41524 -38.96656 -37.81045 -37.07381 -35.71749 -33.91291 -32.18726 -30.89520 -29.38140 -28.34638 -25.50156 -25.25927 -23.27173 -22.55223 -20.26127 -19.06324 -18.41767 -17.57572 -17.30855 -16.63380 -16.31075 -15.80272 -15.29823 -15.04403 -14.55456 -14.47247 -14.28174 -14.03685 -13.15791 -12.97504 -12.56937 -12.38199 -12.21578 -11.94038 -11.78704 -11.54043 -11.13386 -11.03134 -10.96235 -10.66397 -10.52665 -10.28130 -9.70531 -9.23696 -8.82192 -8.75991 -8.64848 -8.40699 -7.84520 -6.38884 -4.49743 1.01549 1.10262 3.09839 3.13639 3.22266 3.25592 3.32170 3.61458 3.91733 4.18064 4.41259 4.74653 4.85579 4.91217 5.10276 5.25733 5.56538 5.63670 5.67281 5.97443 6.11435 6.16815 6.20341 6.28208 6.39297 6.46711 6.51763 6.65283 6.69706 7.10419 7.57016 7.63317 7.69459 7.82591 8.43703 8.53446 8.70421 9.21600 9.49536 10.67517 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.022201 B = 0.005325 C = 0.005313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.882811 B = 5256.467926 C = 5268.358881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.072 3.928 3 Si 0.908 3.092 4 H -0.278 1.278 5 H -0.271 1.271 6 H -0.283 1.283 7 C -0.537 4.537 8 H 0.071 0.929 9 C 0.242 3.758 10 O -0.570 6.570 11 C 0.077 3.923 12 N -0.619 5.619 13 C 0.587 3.413 14 O -0.557 6.557 15 C -0.163 4.163 16 C 0.159 3.841 17 O -0.483 6.483 18 C -0.158 4.158 19 C -0.079 4.079 20 C -0.158 4.158 21 C 0.153 3.847 22 O -0.491 6.491 23 C 0.111 3.889 24 H 0.273 0.727 25 H 0.392 0.608 26 H 0.079 0.921 27 H 0.068 0.932 28 H 0.395 0.605 29 H 0.136 0.864 30 H 0.133 0.867 31 H 0.135 0.865 32 H 0.395 0.605 33 H 0.071 0.929 34 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.332 -6.845 8.946 12.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.130 4.130 3 Si 0.735 3.265 4 H -0.204 1.204 5 H -0.195 1.195 6 H -0.209 1.209 7 C -0.576 4.576 8 H 0.090 0.910 9 C 0.200 3.800 10 O -0.382 6.382 11 C -0.045 4.045 12 N -0.351 5.351 13 C 0.375 3.625 14 O -0.438 6.438 15 C -0.167 4.167 16 C 0.113 3.887 17 O -0.294 6.294 18 C -0.176 4.176 19 C -0.097 4.097 20 C -0.177 4.177 21 C 0.107 3.893 22 O -0.301 6.301 23 C -0.010 4.010 24 H 0.084 0.916 25 H 0.248 0.752 26 H 0.097 0.903 27 H 0.086 0.914 28 H 0.252 0.748 29 H 0.154 0.846 30 H 0.151 0.849 31 H 0.153 0.847 32 H 0.252 0.748 33 H 0.089 0.911 34 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -4.021 -7.963 8.593 12.386 hybrid contribution 0.124 1.452 0.264 1.481 sum -3.897 -6.510 8.857 11.663 Atomic orbital electron populations 1.69336 1.06179 1.28152 1.50023 1.25078 0.95006 0.99865 0.93095 0.86333 0.79852 0.82008 0.78324 1.20363 1.19525 1.20897 1.21511 0.93906 0.89962 1.52177 0.91041 1.19794 0.85424 0.91035 0.83766 1.86070 1.45101 1.50518 1.56524 1.24326 1.00072 0.77532 1.02608 1.50111 1.41335 1.04354 1.39323 1.17347 0.81482 0.82165 0.81475 1.90747 1.55982 1.40427 1.56617 1.20770 0.94199 1.07075 0.94638 1.18293 0.89075 0.96267 0.85039 1.84823 1.88738 1.35395 1.20444 1.21385 1.00004 1.03553 0.92705 1.20936 0.95444 0.97549 0.95815 1.21325 0.92587 1.04361 0.99428 1.18220 0.83876 0.97659 0.89520 1.84754 1.21902 1.33328 1.90156 1.23503 0.93724 0.92547 0.91262 0.91646 0.75215 0.90274 0.91369 0.74820 0.84644 0.84871 0.84731 0.74773 0.91061 0.89531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.75 11.09 55.43 0.61 -22.13 16 2 C 0.07 1.79 5.40 -17.82 -0.10 1.69 16 3 Si 0.91 19.32 29.54 -169.99 -5.02 14.30 16 4 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 5 H -0.27 -5.76 7.11 56.52 0.40 -5.35 16 6 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 7 C -0.54 -13.42 8.62 -34.44 -0.30 -13.72 16 8 H 0.07 1.73 7.81 -52.49 -0.41 1.32 16 9 C 0.24 5.85 1.44 -90.84 -0.13 5.72 16 10 O -0.57 -14.98 13.48 -35.23 -0.48 -15.45 16 11 C 0.08 1.70 7.98 -2.97 -0.02 1.67 16 12 N -0.62 -13.58 3.61 -179.64 -0.65 -14.22 16 13 C 0.59 12.83 6.55 -12.61 -0.08 12.74 16 14 O -0.56 -13.78 17.84 5.25 0.09 -13.69 16 15 C -0.16 -2.96 5.39 -104.73 -0.56 -3.53 16 16 C 0.16 2.59 6.72 -38.71 -0.26 2.33 16 17 O -0.48 -8.02 12.95 -18.67 -0.24 -8.26 16 18 C -0.16 -1.99 9.97 -39.46 -0.39 -2.39 16 19 C -0.08 -0.87 10.02 -39.58 -0.40 -1.26 16 20 C -0.16 -1.93 9.97 -39.47 -0.39 -2.32 16 21 C 0.15 2.38 6.72 -38.71 -0.26 2.12 16 22 O -0.49 -7.36 12.95 -18.69 -0.24 -7.60 16 23 C 0.11 2.48 8.23 -2.97 -0.02 2.46 16 24 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 25 H 0.39 10.41 6.46 45.56 0.29 10.71 16 26 H 0.08 1.60 8.09 -51.93 -0.42 1.18 16 27 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 28 H 0.39 4.79 9.06 45.56 0.41 5.21 16 29 H 0.14 1.38 8.06 -52.49 -0.42 0.96 16 30 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 31 H 0.13 1.29 8.06 -52.49 -0.42 0.86 16 32 H 0.40 4.33 9.06 45.56 0.41 4.74 16 33 H 0.07 1.62 8.14 -51.93 -0.42 1.20 16 34 H 0.09 1.75 8.09 -51.93 -0.42 1.33 16 LS Contribution 307.10 15.07 4.63 4.63 Total: -1.00 -32.30 307.10 -5.59 -37.89 By element: Atomic # 1 Polarization: 20.40 SS G_CDS: -1.38 Total: 19.02 kcal Atomic # 6 Polarization: 8.43 SS G_CDS: -2.92 Total: 5.51 kcal Atomic # 7 Polarization: -36.32 SS G_CDS: -0.03 Total: -36.36 kcal Atomic # 8 Polarization: -44.13 SS G_CDS: -0.87 Total: -45.00 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -5.02 Total: 14.30 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -32.30 -5.59 -37.89 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000436925654.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.127 kcal (2) G-P(sol) polarization free energy of solvation -32.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds