Wall clock time and date at job start Wed Apr 15 2020 11:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 O 1.42904 * 112.94794 * 48.40868 * 9 7 2 11 11 C 1.53953 * 113.74304 * 276.67772 * 9 7 2 12 12 N 1.47582 * 86.11558 * 222.04955 * 11 9 7 13 13 C 1.34773 * 134.48982 * 204.63927 * 12 11 9 14 14 O 1.21629 * 120.00074 * 179.97438 * 13 12 11 15 15 C 1.47238 * 120.00405 * 359.97438 * 13 12 11 16 16 C 1.40257 * 120.23225 * 89.72122 * 15 13 12 17 17 O 1.35655 * 120.12135 * 359.97438 * 16 15 13 18 18 C 1.38553 * 119.74994 * 179.72341 * 16 15 13 19 19 C 1.38242 * 120.23707 * 0.55688 * 18 16 15 20 20 C 1.38240 * 120.48706 * 359.71936 * 19 18 16 21 21 C 1.38550 * 120.23492 * 359.97438 * 20 19 18 22 22 O 1.35662 * 120.12100 * 179.97438 * 21 20 19 23 23 C 1.47581 * 91.01664 * 24.63711 * 12 11 9 24 24 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 25 25 H 0.96699 * 113.99284 * 309.66953 * 10 9 7 26 26 H 1.09002 * 113.76657 * 336.34627 * 11 9 7 27 27 H 1.08991 * 113.76978 * 107.74459 * 11 9 7 28 28 H 0.96703 * 114.00322 * 90.00218 * 17 16 15 29 29 H 1.07998 * 119.87526 * 180.27680 * 18 16 15 30 30 H 1.07998 * 119.75367 * 179.69318 * 19 18 16 31 31 H 1.07996 * 119.88263 * 180.02562 * 20 19 18 32 32 H 0.96705 * 114.00051 * 270.02480 * 22 21 20 33 33 H 1.09001 * 113.77016 * 221.05654 * 23 12 11 34 34 H 1.09005 * 113.86980 * 89.67729 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 0.2156 -2.5447 -0.9843 11 6 0.7997 -2.9543 1.3992 12 7 1.2211 -4.3068 0.9853 13 6 0.8828 -5.5570 1.3583 14 8 1.4111 -6.5144 0.8258 15 6 -0.1262 -5.7638 2.4104 16 6 -1.4839 -5.8716 2.0754 17 8 -1.8742 -5.7852 0.7791 18 6 -2.4244 -6.0718 3.0729 19 6 -2.0299 -6.1539 4.3953 20 6 -0.6950 -6.0433 4.7371 21 6 0.2629 -5.8491 3.7551 22 8 1.5722 -5.7402 4.0932 23 6 2.1615 -3.7405 -0.0011 24 1 -0.4850 0.8401 0.0004 25 1 -0.3764 -1.7802 -0.9678 26 1 1.3966 -2.5373 2.2104 27 1 -0.2731 -2.8605 1.5670 28 1 -1.8968 -6.6347 0.3176 29 1 -3.4699 -6.1596 2.8168 30 1 -2.7701 -6.3052 5.1670 31 1 -0.3976 -6.1093 5.7732 32 1 1.8580 -4.8341 4.2731 33 1 2.1758 -4.2745 -0.9513 34 1 3.1590 -3.5540 0.3970 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000436925654.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:22 Heat of formation + Delta-G solvation = -128.349966 kcal Electronic energy + Delta-G solvation = -22101.975679 eV Core-core repulsion = 18579.813998 eV Total energy + Delta-G solvation = -3522.161681 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.76913 -40.53255 -38.96047 -38.83069 -36.80051 -35.84488 -34.14340 -32.20533 -30.41491 -30.04804 -27.27829 -27.07066 -24.55288 -23.63237 -21.92632 -20.46956 -19.86191 -19.32673 -18.57450 -18.21318 -17.57165 -17.40971 -16.98249 -16.32149 -16.03645 -15.94050 -15.66793 -15.55538 -14.84177 -14.40619 -14.21244 -13.97373 -13.76667 -13.41735 -13.17828 -12.90973 -12.81395 -12.75094 -12.28538 -12.23953 -12.17573 -11.81821 -11.42901 -11.01583 -10.66056 -10.30755 -9.94450 -9.68261 -9.65456 -8.27125 -6.45243 -0.08155 0.07951 1.44666 1.46503 1.50427 1.59721 1.87737 2.39667 2.42068 2.86017 2.94679 3.31892 3.36470 3.74219 4.01838 4.07521 4.12911 4.33992 4.37795 4.52040 4.56771 4.68540 4.72146 4.84944 4.89349 5.16037 5.18592 5.23435 5.28711 5.61904 5.71618 5.90654 6.58360 6.60852 6.63228 6.71932 6.99651 7.28626 7.45334 8.79005 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.022201 B = 0.005325 C = 0.005313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.882811 B = 5256.467926 C = 5268.358881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.032 3.968 3 Si 0.972 3.028 4 H -0.269 1.269 5 H -0.270 1.270 6 H -0.284 1.284 7 C -0.556 4.556 8 H 0.075 0.925 9 C 0.223 3.777 10 O -0.586 6.586 11 C 0.097 3.903 12 N -0.620 5.620 13 C 0.585 3.415 14 O -0.598 6.598 15 C -0.205 4.205 16 C 0.138 3.862 17 O -0.507 6.507 18 C -0.153 4.153 19 C -0.058 4.058 20 C -0.150 4.150 21 C 0.141 3.859 22 O -0.505 6.505 23 C 0.109 3.891 24 H 0.276 0.724 25 H 0.387 0.613 26 H 0.097 0.903 27 H 0.054 0.946 28 H 0.407 0.593 29 H 0.163 0.837 30 H 0.182 0.818 31 H 0.168 0.832 32 H 0.409 0.591 33 H 0.057 0.943 34 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.125 -6.476 11.434 14.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.168 4.168 3 Si 0.797 3.203 4 H -0.195 1.195 5 H -0.195 1.195 6 H -0.210 1.210 7 C -0.593 4.593 8 H 0.093 0.907 9 C 0.182 3.818 10 O -0.398 6.398 11 C -0.026 4.026 12 N -0.352 5.352 13 C 0.376 3.624 14 O -0.481 6.481 15 C -0.209 4.209 16 C 0.092 3.908 17 O -0.320 6.320 18 C -0.171 4.171 19 C -0.076 4.076 20 C -0.168 4.168 21 C 0.095 3.905 22 O -0.318 6.318 23 C -0.013 4.013 24 H 0.086 0.914 25 H 0.242 0.758 26 H 0.115 0.885 27 H 0.073 0.927 28 H 0.266 0.734 29 H 0.180 0.820 30 H 0.199 0.801 31 H 0.185 0.815 32 H 0.268 0.732 33 H 0.076 0.924 34 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -4.814 -7.595 11.093 14.279 hybrid contribution 0.324 1.294 -0.494 1.422 sum -4.489 -6.301 10.599 13.122 Atomic orbital electron populations 1.69407 1.07255 1.28960 1.50132 1.25791 0.95738 1.02735 0.92556 0.85342 0.78429 0.78056 0.78514 1.19475 1.19468 1.20962 1.21719 0.94194 0.90556 1.52880 0.90701 1.20082 0.85447 0.91774 0.84523 1.86057 1.45668 1.50376 1.57730 1.24100 0.99404 0.77319 1.01769 1.50146 1.41176 1.04713 1.39148 1.17999 0.81516 0.81222 0.81660 1.90696 1.57677 1.41390 1.58369 1.20753 0.94128 1.11314 0.94742 1.18645 0.89140 0.97537 0.85486 1.84773 1.88750 1.36928 1.21506 1.21712 1.00514 1.02297 0.92613 1.21519 0.95880 0.94198 0.96021 1.21705 0.92379 1.02610 1.00107 1.18508 0.84606 0.98171 0.89187 1.84711 1.22249 1.34748 1.90074 1.23542 0.94676 0.91796 0.91288 0.91402 0.75763 0.88481 0.92697 0.73418 0.81981 0.80104 0.81466 0.73185 0.92425 0.87436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -46.55 11.09 21.45 0.24 -46.31 16 2 C 0.03 1.59 5.40 84.66 0.46 2.05 16 3 Si 0.97 39.04 29.54 68.60 2.03 41.06 16 4 H -0.27 -10.42 7.11 99.48 0.71 -9.71 16 5 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 6 H -0.28 -11.36 7.11 99.48 0.71 -10.66 16 7 C -0.56 -27.73 8.62 25.60 0.22 -27.51 16 8 H 0.07 3.60 7.81 -2.91 -0.02 3.57 16 9 C 0.22 10.99 1.44 -10.88 -0.02 10.97 16 10 O -0.59 -31.78 13.48 -148.98 -2.01 -33.79 16 11 C 0.10 4.28 7.98 86.48 0.69 4.97 16 12 N -0.62 -27.85 3.61 -844.34 -3.05 -30.89 16 13 C 0.59 26.34 6.55 86.61 0.57 26.90 16 14 O -0.60 -30.77 17.84 -4.12 -0.07 -30.85 16 15 C -0.21 -7.50 5.39 -19.93 -0.11 -7.61 16 16 C 0.14 4.41 6.72 22.84 0.15 4.56 16 17 O -0.51 -17.21 12.95 -89.70 -1.16 -18.37 16 18 C -0.15 -3.42 9.97 22.35 0.22 -3.20 16 19 C -0.06 -1.01 10.02 22.27 0.22 -0.79 16 20 C -0.15 -3.10 9.97 22.34 0.22 -2.88 16 21 C 0.14 4.20 6.72 22.83 0.15 4.35 16 22 O -0.50 -14.71 12.95 -89.79 -1.16 -15.87 16 23 C 0.11 4.97 8.23 86.48 0.71 5.68 16 24 H 0.28 13.24 8.31 -92.71 -0.77 12.47 16 25 H 0.39 21.23 6.46 -74.06 -0.48 20.75 16 26 H 0.10 3.89 8.09 -2.39 -0.02 3.87 16 27 H 0.05 2.56 8.14 -2.39 -0.02 2.54 16 28 H 0.41 10.40 9.06 -74.06 -0.67 9.73 16 29 H 0.16 2.70 8.06 -2.91 -0.02 2.68 16 30 H 0.18 1.47 8.06 -2.91 -0.02 1.45 16 31 H 0.17 2.36 8.06 -2.91 -0.02 2.33 16 32 H 0.41 8.62 9.06 -74.05 -0.67 7.95 16 33 H 0.06 2.74 8.14 -2.39 -0.02 2.72 16 34 H 0.11 4.37 8.09 -2.38 -0.02 4.35 16 Total: -1.00 -71.20 307.10 -2.33 -73.53 By element: Atomic # 1 Polarization: 44.64 SS G_CDS: -0.64 Total: 44.00 kcal Atomic # 6 Polarization: 14.00 SS G_CDS: 3.50 Total: 17.50 kcal Atomic # 7 Polarization: -74.40 SS G_CDS: -2.81 Total: -77.21 kcal Atomic # 8 Polarization: -94.47 SS G_CDS: -4.41 Total: -98.88 kcal Atomic # 14 Polarization: 39.04 SS G_CDS: 2.03 Total: 41.06 kcal Total: -71.20 -2.33 -73.53 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000436925654.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.820 kcal (2) G-P(sol) polarization free energy of solvation -71.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds