Wall clock time and date at job start Wed Apr 15 2020 11:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00071 * 2 1 4 4 H 1.48507 * 109.47100 * 359.97438 * 3 2 1 5 5 H 1.48496 * 109.47209 * 119.99767 * 3 2 1 6 6 H 1.48501 * 109.47255 * 240.00541 * 3 2 1 7 7 C 1.37878 * 120.00227 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00144 * 152.35987 * 7 2 1 9 9 C 1.50698 * 119.99890 * 332.36466 * 7 2 1 10 10 H 1.09004 * 109.47492 * 54.16939 * 9 7 2 11 11 N 1.46503 * 109.47236 * 174.16940 * 9 7 2 12 12 C 1.34770 * 120.00168 * 204.99768 * 11 9 7 13 13 O 1.21282 * 120.00153 * 0.02562 * 12 11 9 14 14 C 1.50704 * 120.00091 * 180.02562 * 12 11 9 15 15 H 1.09003 * 115.50487 * 325.57922 * 14 12 11 16 16 C 1.52996 * 117.43634 * 110.95549 * 14 12 11 17 17 H 1.09004 * 119.80949 * 355.35923 * 16 14 12 18 18 C 1.54536 * 118.02771 * 198.17090 * 16 14 12 19 19 O 1.44427 * 104.72679 * 273.03541 * 18 16 14 20 20 C 1.44419 * 105.27239 * 40.53103 * 19 18 16 21 21 C 1.52999 * 117.43219 * 180.21507 * 14 12 11 22 22 H 1.08995 * 119.81219 * 5.64478 * 21 14 12 23 23 C 1.53006 * 109.46858 * 294.16967 * 9 7 2 24 24 F 1.39891 * 109.46931 * 56.79256 * 23 9 7 25 25 F 1.39898 * 109.46690 * 176.79045 * 23 9 7 26 26 F 1.39893 * 109.47026 * 296.78627 * 23 9 7 27 27 H 0.96996 * 119.99658 * 174.46586 * 1 2 3 28 28 H 0.97003 * 119.99593 * 24.99901 * 11 9 7 29 29 H 1.08999 * 110.39272 * 154.23888 * 18 16 14 30 30 H 1.08994 * 110.52144 * 31.90175 * 18 16 14 31 31 H 1.09003 * 110.37123 * 200.65253 * 20 19 18 32 32 H 1.09009 * 110.37122 * 78.31630 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2841 2.7465 -0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1028 1.6965 -1.2126 7 6 2.0046 -1.1940 0.0005 8 1 2.9921 -1.2476 -0.4333 9 6 1.3801 -2.4244 0.6064 10 1 0.4035 -2.5967 0.1539 11 7 2.2435 -3.5821 0.3602 12 6 1.7172 -4.8226 0.3378 13 8 0.5288 -4.9806 0.5212 14 6 2.6055 -6.0135 0.0851 15 1 3.4334 -5.8438 -0.6032 16 6 2.8436 -6.9754 1.2508 17 1 2.4391 -6.7434 2.2360 18 6 4.0518 -7.9351 1.1651 19 8 3.5537 -9.0898 0.4548 20 6 2.7150 -8.5587 -0.5941 21 6 1.9457 -7.3938 0.0674 22 1 0.8615 -7.4772 0.1419 23 6 1.2151 -2.2228 2.1142 24 9 0.4511 -1.0749 2.3502 25 9 0.5690 -3.3345 2.6653 26 9 2.4742 -2.0747 2.7054 27 1 -0.4849 -0.8361 -0.0810 28 1 3.1939 -3.4557 0.2132 29 1 4.3836 -8.2182 2.1640 30 1 4.8688 -7.4724 0.6116 31 1 2.0200 -9.3208 -0.9467 32 1 3.3258 -8.1904 -1.4184 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928800935.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:12 Heat of formation + Delta-G solvation = -206.596985 kcal Electronic energy + Delta-G solvation = -22705.482907 eV Core-core repulsion = 18638.071440 eV Total energy + Delta-G solvation = -4067.411467 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.087 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -48.83419 -46.39026 -46.28161 -40.68679 -38.70254 -35.16239 -34.45465 -32.75890 -28.90261 -28.68804 -25.91597 -24.52807 -22.72730 -21.28259 -20.76221 -19.92324 -18.16122 -17.43792 -17.18042 -17.09007 -16.35962 -15.94190 -15.66933 -15.27899 -14.63835 -14.05720 -13.92139 -13.51149 -13.31714 -13.06770 -12.94850 -12.81817 -12.72546 -12.61557 -12.51586 -12.48489 -11.89709 -11.67206 -11.37431 -11.15300 -10.81855 -10.50040 -10.35675 -10.24281 -9.83403 -9.62957 -9.48350 -8.58028 -8.46225 -6.85104 -4.56955 2.62539 3.26012 3.34559 3.35258 3.51981 3.64302 3.83753 4.09707 4.27579 4.48600 4.48962 4.73993 4.76983 4.81744 4.99745 5.14557 5.19689 5.37104 5.48444 5.49268 5.52025 5.55843 5.70430 5.90253 6.02361 6.49258 6.54551 6.90092 7.24212 7.99856 8.11153 8.34994 8.63563 9.10592 10.49515 Molecular weight = 279.09amu Principal moments of inertia in cm(-1) A = 0.030226 B = 0.005042 C = 0.004853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.123543 B = 5552.317379 C = 5767.911991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.053 3.947 3 Si 1.060 2.940 4 H -0.278 1.278 5 H -0.280 1.280 6 H -0.283 1.283 7 C -0.651 4.651 8 H 0.074 0.926 9 C 0.236 3.764 10 H 0.078 0.922 11 N -0.698 5.698 12 C 0.534 3.466 13 O -0.534 6.534 14 C -0.144 4.144 15 H 0.123 0.877 16 C -0.169 4.169 17 H 0.128 0.872 18 C 0.075 3.925 19 O -0.374 6.374 20 C 0.074 3.926 21 C -0.162 4.162 22 H 0.135 0.865 23 C 0.415 3.585 24 F -0.175 7.175 25 F -0.207 7.207 26 F -0.197 7.197 27 H 0.277 0.723 28 H 0.403 0.597 29 H 0.100 0.900 30 H 0.066 0.934 31 H 0.101 0.899 32 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.542 -10.755 -0.068 13.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.162 4.162 3 Si 0.886 3.114 4 H -0.203 1.203 5 H -0.206 1.206 6 H -0.209 1.209 7 C -0.686 4.686 8 H 0.092 0.908 9 C 0.130 3.870 10 H 0.096 0.904 11 N -0.347 5.347 12 C 0.319 3.681 13 O -0.411 6.411 14 C -0.166 4.166 15 H 0.141 0.859 16 C -0.188 4.188 17 H 0.145 0.855 18 C -0.001 4.001 19 O -0.293 6.293 20 C -0.003 4.003 21 C -0.180 4.180 22 H 0.153 0.847 23 C 0.359 3.641 24 F -0.157 7.157 25 F -0.188 7.188 26 F -0.179 7.179 27 H 0.088 0.912 28 H 0.237 0.763 29 H 0.118 0.882 30 H 0.084 0.916 31 H 0.119 0.881 32 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.480 -9.464 0.208 11.471 hybrid contribution 0.535 -1.198 0.223 1.331 sum 7.015 -10.662 0.431 12.770 Atomic orbital electron populations 1.70760 1.07653 1.31774 1.37061 1.25948 0.95647 1.02914 0.91643 0.83700 0.75530 0.75023 0.77182 1.20323 1.20612 1.20911 1.21565 1.06123 0.93477 1.47412 0.90774 1.19696 0.95407 0.86312 0.85575 0.90403 1.45839 1.12511 1.05264 1.71084 1.19514 0.87981 0.83678 0.76937 1.90706 1.15744 1.85614 1.49016 1.22409 1.01732 0.90239 1.02175 0.85927 1.24160 0.98926 1.00553 0.95145 0.85453 1.22949 0.93939 0.85186 0.98075 1.89173 1.65401 1.29040 1.45636 1.22960 0.92611 0.94653 0.90074 1.24138 1.00725 0.92620 1.00546 0.84712 1.23018 0.72743 0.73079 0.95288 1.93153 1.75972 1.50993 1.95538 1.93096 1.82475 1.54549 1.88723 1.93018 1.42488 1.95623 1.86740 0.91158 0.76278 0.88154 0.91591 0.88126 0.91728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.45 12.33 55.43 0.68 -22.77 16 2 C 0.05 1.37 4.23 -17.82 -0.08 1.30 16 3 Si 1.06 23.06 29.99 -169.99 -5.10 17.96 16 4 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 6 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 7 C -0.65 -16.37 8.32 -34.44 -0.29 -16.66 16 8 H 0.07 1.79 7.86 -52.49 -0.41 1.38 16 9 C 0.24 5.68 2.00 -69.08 -0.14 5.54 16 10 H 0.08 2.08 6.46 -51.93 -0.34 1.75 16 11 N -0.70 -13.77 4.94 -54.93 -0.27 -14.04 16 12 C 0.53 10.08 7.22 -10.99 -0.08 10.00 16 13 O -0.53 -12.07 14.91 5.56 0.08 -11.99 16 14 C -0.14 -1.99 5.74 -91.77 -0.53 -2.51 16 15 H 0.12 1.37 8.14 -51.93 -0.42 0.95 16 16 C -0.17 -2.12 6.91 -89.12 -0.62 -2.73 16 17 H 0.13 1.71 8.14 -51.93 -0.42 1.29 16 18 C 0.08 0.77 7.44 37.96 0.28 1.06 16 19 O -0.37 -4.46 11.65 -35.23 -0.41 -4.88 16 20 C 0.07 0.77 7.44 37.93 0.28 1.05 16 21 C -0.16 -2.07 6.64 -89.15 -0.59 -2.66 16 22 H 0.14 1.90 7.82 -51.93 -0.41 1.49 16 23 C 0.41 10.16 2.82 37.16 0.10 10.27 16 24 F -0.18 -4.62 14.70 2.25 0.03 -4.59 16 25 F -0.21 -5.02 15.77 2.25 0.04 -4.99 16 26 F -0.20 -4.60 16.97 2.25 0.04 -4.56 16 27 H 0.28 7.82 7.25 -40.82 -0.30 7.52 16 28 H 0.40 6.83 8.53 -40.82 -0.35 6.48 16 29 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 LS Contribution 288.12 15.07 4.34 4.34 Total: -1.00 -30.04 288.12 -5.34 -35.38 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -3.13 Total: 5.47 kcal Atomic # 6 Polarization: 6.29 SS G_CDS: -1.64 Total: 4.65 kcal Atomic # 7 Polarization: -37.22 SS G_CDS: 0.41 Total: -36.81 kcal Atomic # 8 Polarization: -16.54 SS G_CDS: -0.33 Total: -16.86 kcal Atomic # 9 Polarization: -14.24 SS G_CDS: 0.11 Total: -14.14 kcal Atomic # 14 Polarization: 23.06 SS G_CDS: -5.10 Total: 17.96 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -30.04 -5.34 -35.38 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928800935.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -171.218 kcal (2) G-P(sol) polarization free energy of solvation -30.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -206.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds