Wall clock time and date at job start Wed Apr 15 2020 11:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00071 * 2 1 4 4 H 1.48507 * 109.47100 * 359.97438 * 3 2 1 5 5 H 1.48496 * 109.47209 * 119.99767 * 3 2 1 6 6 H 1.48501 * 109.47255 * 240.00541 * 3 2 1 7 7 C 1.37878 * 120.00227 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00144 * 152.35987 * 7 2 1 9 9 C 1.50698 * 119.99890 * 332.36466 * 7 2 1 10 10 H 1.09004 * 109.47492 * 54.16939 * 9 7 2 11 11 N 1.46503 * 109.47236 * 174.16940 * 9 7 2 12 12 C 1.34770 * 120.00168 * 204.99768 * 11 9 7 13 13 O 1.21282 * 120.00153 * 0.02562 * 12 11 9 14 14 C 1.50704 * 120.00091 * 180.02562 * 12 11 9 15 15 H 1.09003 * 115.50487 * 325.57922 * 14 12 11 16 16 C 1.52996 * 117.43634 * 110.95549 * 14 12 11 17 17 H 1.09004 * 119.80949 * 355.35923 * 16 14 12 18 18 C 1.54536 * 118.02771 * 198.17090 * 16 14 12 19 19 O 1.44427 * 104.72679 * 273.03541 * 18 16 14 20 20 C 1.44419 * 105.27239 * 40.53103 * 19 18 16 21 21 C 1.52999 * 117.43219 * 180.21507 * 14 12 11 22 22 H 1.08995 * 119.81219 * 5.64478 * 21 14 12 23 23 C 1.53006 * 109.46858 * 294.16967 * 9 7 2 24 24 F 1.39891 * 109.46931 * 56.79256 * 23 9 7 25 25 F 1.39898 * 109.46690 * 176.79045 * 23 9 7 26 26 F 1.39893 * 109.47026 * 296.78627 * 23 9 7 27 27 H 0.96996 * 119.99658 * 174.46586 * 1 2 3 28 28 H 0.97003 * 119.99593 * 24.99901 * 11 9 7 29 29 H 1.08999 * 110.39272 * 154.23888 * 18 16 14 30 30 H 1.08994 * 110.52144 * 31.90175 * 18 16 14 31 31 H 1.09003 * 110.37123 * 200.65253 * 20 19 18 32 32 H 1.09009 * 110.37122 * 78.31630 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2841 2.7465 -0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1028 1.6965 -1.2126 7 6 2.0046 -1.1940 0.0005 8 1 2.9921 -1.2476 -0.4333 9 6 1.3801 -2.4244 0.6064 10 1 0.4035 -2.5967 0.1539 11 7 2.2435 -3.5821 0.3602 12 6 1.7172 -4.8226 0.3378 13 8 0.5288 -4.9806 0.5212 14 6 2.6055 -6.0135 0.0851 15 1 3.4334 -5.8438 -0.6032 16 6 2.8436 -6.9754 1.2508 17 1 2.4391 -6.7434 2.2360 18 6 4.0518 -7.9351 1.1651 19 8 3.5537 -9.0898 0.4548 20 6 2.7150 -8.5587 -0.5941 21 6 1.9457 -7.3938 0.0674 22 1 0.8615 -7.4772 0.1419 23 6 1.2151 -2.2228 2.1142 24 9 0.4511 -1.0749 2.3502 25 9 0.5690 -3.3345 2.6653 26 9 2.4742 -2.0747 2.7054 27 1 -0.4849 -0.8361 -0.0810 28 1 3.1939 -3.4557 0.2132 29 1 4.3836 -8.2182 2.1640 30 1 4.8688 -7.4724 0.6116 31 1 2.0200 -9.3208 -0.9467 32 1 3.3258 -8.1904 -1.4184 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928800935.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:11 Heat of formation + Delta-G solvation = -227.181526 kcal Electronic energy + Delta-G solvation = -22706.375520 eV Core-core repulsion = 18638.071440 eV Total energy + Delta-G solvation = -4068.304080 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.087 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -50.84042 -48.37924 -48.31288 -41.78682 -40.10647 -36.87582 -35.59100 -34.62603 -30.50861 -29.70514 -27.07447 -26.53737 -24.16619 -22.81781 -21.73787 -21.39269 -19.88597 -19.34733 -19.08381 -18.78977 -18.07469 -17.18238 -16.75329 -16.13263 -16.09450 -15.61171 -15.58674 -15.30506 -15.27071 -14.84636 -14.75580 -14.63092 -14.53804 -14.49868 -14.06325 -13.59902 -13.30762 -13.07332 -12.88094 -12.58681 -12.53492 -11.93857 -11.51951 -11.49098 -11.37271 -11.02895 -10.67352 -10.49307 -10.27053 -8.90702 -6.62387 1.23108 1.54804 1.62168 1.82458 1.87903 2.16678 2.45572 2.50177 2.83891 3.01141 3.26676 3.39096 3.49301 3.54711 3.64345 3.77663 3.83042 4.04597 4.09954 4.39274 4.54870 4.68466 4.75123 4.79885 4.93694 5.01737 5.21796 5.32765 5.69595 5.99451 6.24867 6.53858 7.05954 7.19222 8.42521 Molecular weight = 279.09amu Principal moments of inertia in cm(-1) A = 0.030226 B = 0.005042 C = 0.004853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.123543 B = 5552.317379 C = 5767.911991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.009 3.991 3 Si 1.104 2.896 4 H -0.285 1.285 5 H -0.271 1.271 6 H -0.256 1.256 7 C -0.654 4.654 8 H 0.087 0.913 9 C 0.241 3.759 10 H 0.044 0.956 11 N -0.693 5.693 12 C 0.529 3.471 13 O -0.578 6.578 14 C -0.143 4.143 15 H 0.158 0.842 16 C -0.165 4.165 17 H 0.112 0.888 18 C 0.080 3.920 19 O -0.388 6.388 20 C 0.080 3.920 21 C -0.166 4.166 22 H 0.114 0.886 23 C 0.415 3.585 24 F -0.188 7.188 25 F -0.207 7.207 26 F -0.187 7.187 27 H 0.261 0.739 28 H 0.418 0.582 29 H 0.116 0.884 30 H 0.089 0.911 31 H 0.114 0.886 32 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.205 -11.431 -0.584 15.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.199 4.199 3 Si 0.924 3.076 4 H -0.211 1.211 5 H -0.196 1.196 6 H -0.181 1.181 7 C -0.689 4.689 8 H 0.105 0.895 9 C 0.133 3.867 10 H 0.061 0.939 11 N -0.343 5.343 12 C 0.316 3.684 13 O -0.458 6.458 14 C -0.164 4.164 15 H 0.175 0.825 16 C -0.184 4.184 17 H 0.130 0.870 18 C 0.004 3.996 19 O -0.307 6.307 20 C 0.003 3.997 21 C -0.185 4.185 22 H 0.132 0.868 23 C 0.359 3.641 24 F -0.170 7.170 25 F -0.189 7.189 26 F -0.169 7.169 27 H 0.071 0.929 28 H 0.255 0.745 29 H 0.134 0.866 30 H 0.107 0.893 31 H 0.132 0.868 32 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 9.188 -10.171 -0.319 13.710 hybrid contribution -0.337 -1.053 0.422 1.183 sum 8.851 -11.225 0.103 14.295 Atomic orbital electron populations 1.70881 1.08752 1.30770 1.39760 1.27305 0.95624 1.06382 0.90607 0.83153 0.74722 0.71171 0.78603 1.21083 1.19601 1.18078 1.21843 1.06385 0.93678 1.46959 0.89481 1.19311 0.94632 0.87798 0.84973 0.93878 1.45733 1.12807 1.04614 1.71156 1.20411 0.88091 0.84498 0.75369 1.90684 1.18079 1.86250 1.50780 1.22335 1.01865 0.88181 1.03992 0.82488 1.24248 1.00205 0.99888 0.94058 0.86969 1.23090 0.93063 0.84099 0.99364 1.89167 1.65599 1.29803 1.46174 1.23062 0.92765 0.93859 0.89968 1.24204 1.00113 0.92841 1.01370 0.86806 1.23021 0.72849 0.72638 0.95606 1.93126 1.76434 1.51763 1.95645 1.93092 1.82580 1.54497 1.88740 1.93025 1.41713 1.95562 1.86610 0.92881 0.74482 0.86614 0.89283 0.86757 0.89601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -49.43 12.33 21.45 0.26 -49.16 16 2 C 0.01 0.47 4.23 84.65 0.36 0.83 16 3 Si 1.10 45.31 29.99 68.60 2.06 47.37 16 4 H -0.29 -11.99 7.11 99.48 0.71 -11.28 16 5 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 6 H -0.26 -9.39 7.11 99.48 0.71 -8.69 16 7 C -0.65 -32.53 8.32 25.60 0.21 -32.32 16 8 H 0.09 4.04 7.86 -2.91 -0.02 4.02 16 9 C 0.24 11.70 2.00 44.25 0.09 11.79 16 10 H 0.04 2.42 6.46 -2.38 -0.02 2.40 16 11 N -0.69 -26.92 4.94 -446.08 -2.20 -29.13 16 12 C 0.53 19.85 7.22 87.66 0.63 20.48 16 13 O -0.58 -26.91 14.91 -3.03 -0.05 -26.96 16 14 C -0.14 -3.66 5.74 -11.54 -0.07 -3.73 16 15 H 0.16 2.92 8.14 -2.39 -0.02 2.90 16 16 C -0.16 -3.83 6.91 -9.82 -0.07 -3.89 16 17 H 0.11 2.95 8.14 -2.38 -0.02 2.93 16 18 C 0.08 1.37 7.44 72.50 0.54 1.91 16 19 O -0.39 -8.05 11.65 -148.98 -1.74 -9.78 16 20 C 0.08 1.43 7.44 72.48 0.54 1.97 16 21 C -0.17 -4.02 6.64 -9.84 -0.07 -4.08 16 22 H 0.11 3.24 7.82 -2.39 -0.02 3.22 16 23 C 0.41 20.50 2.82 71.98 0.20 20.70 16 24 F -0.19 -10.10 14.70 44.97 0.66 -9.44 16 25 F -0.21 -10.25 15.77 44.97 0.71 -9.54 16 26 F -0.19 -8.59 16.97 44.97 0.76 -7.83 16 27 H 0.26 15.36 7.25 -92.71 -0.67 14.69 16 28 H 0.42 13.42 8.53 -92.71 -0.79 12.63 16 29 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.09 1.21 8.14 -2.38 -0.02 1.19 16 Total: -1.00 -65.61 288.12 3.33 -62.28 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: 0.48 Total: 18.54 kcal Atomic # 6 Polarization: 11.27 SS G_CDS: 2.38 Total: 13.65 kcal Atomic # 7 Polarization: -76.35 SS G_CDS: -1.94 Total: -78.29 kcal Atomic # 8 Polarization: -34.96 SS G_CDS: -1.78 Total: -36.74 kcal Atomic # 9 Polarization: -28.94 SS G_CDS: 2.13 Total: -26.81 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.06 Total: 47.37 kcal Total: -65.61 3.33 -62.28 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928800935.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -164.905 kcal (2) G-P(sol) polarization free energy of solvation -65.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -230.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -227.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds