Wall clock time and date at job start Wed Apr 15 2020 11:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.47192 * 179.97438 * 2 1 4 4 C 1.53007 * 109.46964 * 302.39066 * 3 2 1 5 5 N 1.46901 * 109.46944 * 180.88578 * 4 3 2 6 6 C 1.46897 * 110.99878 * 299.18153 * 5 4 3 7 7 C 1.50700 * 109.47164 * 293.91318 * 6 5 4 8 8 H 1.08003 * 119.99890 * 355.02610 * 7 6 5 9 9 C 1.37876 * 120.00264 * 175.03247 * 7 6 5 10 10 N 1.31516 * 119.99709 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 120.00257 * 179.97438 * 9 7 6 12 12 H 1.48507 * 109.47105 * 59.99731 * 11 9 7 13 13 H 1.48503 * 109.47285 * 179.97438 * 11 9 7 14 14 H 1.48492 * 109.47184 * 299.99733 * 11 9 7 15 15 C 1.46897 * 111.00382 * 63.13911 * 5 4 3 16 16 C 1.50697 * 109.47464 * 66.04069 * 15 5 4 17 17 C 1.38712 * 120.78659 * 269.98058 * 16 15 5 18 18 C 1.38143 * 119.19563 * 180.02562 * 17 16 15 19 19 N 1.31903 * 120.78429 * 0.02562 * 18 17 16 20 20 C 1.31957 * 121.70399 * 359.68655 * 19 18 17 21 21 Cl 1.73596 * 119.63373 * 180.28880 * 20 19 18 22 22 C 1.38396 * 120.73035 * 0.57401 * 20 19 18 23 23 H 1.08993 * 109.47714 * 182.38752 * 3 2 1 24 24 H 1.08996 * 109.47185 * 62.38427 * 3 2 1 25 25 H 1.08996 * 109.47243 * 60.88189 * 4 3 2 26 26 H 1.09000 * 109.46599 * 300.88058 * 4 3 2 27 27 H 1.08998 * 109.47353 * 53.91144 * 6 5 4 28 28 H 1.09000 * 109.46933 * 173.91435 * 6 5 4 29 29 H 0.97000 * 119.99938 * 180.02562 * 10 9 7 30 30 H 1.09007 * 109.46607 * 306.04433 * 15 5 4 31 31 H 1.09001 * 109.47592 * 186.04679 * 15 5 4 32 32 H 1.08002 * 120.39933 * 0.02562 * 17 16 15 33 33 H 1.08001 * 119.60530 * 180.02562 * 18 17 16 34 34 H 1.08001 * 120.42657 * 179.73020 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1183 -0.7719 1.2181 5 7 4.5872 -0.7532 1.2296 6 6 5.1312 -1.3930 0.0244 7 6 4.7921 -2.8613 0.0386 8 1 4.2995 -3.2935 0.8970 9 6 5.1108 -3.6529 -1.0444 10 7 5.7103 -3.1265 -2.0899 11 14 4.6911 -5.4730 -1.0266 12 1 3.2230 -5.6411 -0.8790 13 1 5.1346 -6.0958 -2.2997 14 1 5.3814 -6.1291 0.1127 15 6 5.0952 0.6177 1.3729 16 6 4.7191 1.1536 2.7302 17 6 3.5235 1.8309 2.9199 18 6 3.2120 2.3087 4.1780 19 7 4.0360 2.1279 5.1920 20 6 5.1790 1.4838 5.0504 21 17 6.2196 1.2701 6.4233 22 6 5.5600 0.9819 3.8182 23 1 2.9709 1.0275 0.0428 24 1 2.9715 -0.4755 -0.9106 25 1 2.7684 -1.8029 1.1672 26 1 2.7419 -0.3049 2.1283 27 1 4.6973 -0.9284 -0.8610 28 1 6.2141 -1.2704 0.0054 29 1 5.9342 -3.6833 -2.8520 30 1 4.6588 1.2495 0.5992 31 1 6.1804 0.6156 1.2709 32 1 2.8445 1.9827 2.0938 33 1 2.2826 2.8366 4.3332 34 1 6.4985 0.4593 3.7069 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172624005.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:11 Heat of formation + Delta-G solvation = 57.914073 kcal Electronic energy + Delta-G solvation = -18827.243626 eV Core-core repulsion = 15786.160875 eV Total energy + Delta-G solvation = -3041.082751 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.083 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.39654 -38.00336 -36.63864 -36.07086 -33.40344 -32.48969 -31.09758 -30.41309 -27.74544 -25.69241 -23.98758 -23.48108 -22.04009 -20.00697 -17.65839 -16.90030 -16.66564 -16.27929 -15.92291 -15.41199 -14.75257 -14.56454 -14.32579 -13.99084 -13.81074 -13.67114 -13.02146 -12.38113 -12.26321 -12.08329 -11.94931 -11.76483 -11.63217 -11.38556 -11.27688 -11.21090 -10.87257 -10.72302 -10.36481 -10.10375 -9.70211 -9.66791 -9.37213 -9.00126 -8.57076 -7.58421 -6.17264 -4.19415 0.90169 1.12714 1.78997 2.99117 3.02009 3.26699 3.31676 3.34547 3.58133 4.20826 4.32454 4.40253 4.60714 4.85508 4.92508 4.98269 5.07659 5.19387 5.31134 5.37297 5.52218 5.61348 5.69268 5.82024 5.91516 6.12829 6.25573 6.45962 6.48893 6.98970 7.06861 7.59270 7.65748 7.73139 7.83839 7.92831 8.28589 8.87998 9.46451 10.92832 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.015596 B = 0.004928 C = 0.004066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1794.854405 B = 5680.221179 C = 6884.424694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C 0.222 3.778 3 C -0.075 4.075 4 C 0.067 3.933 5 N -0.520 5.520 6 C 0.187 3.813 7 C -0.513 4.513 8 H 0.064 0.936 9 C 0.060 3.940 10 N -0.896 5.896 11 Si 0.895 3.105 12 H -0.277 1.277 13 H -0.288 1.288 14 H -0.275 1.275 15 C 0.078 3.922 16 C -0.006 4.006 17 C -0.168 4.168 18 C 0.114 3.886 19 N -0.487 5.487 20 C 0.173 3.827 21 Cl -0.040 7.040 22 C -0.133 4.133 23 H 0.098 0.902 24 H 0.125 0.875 25 H 0.095 0.905 26 H 0.064 0.936 27 H 0.007 0.993 28 H 0.033 0.967 29 H 0.263 0.737 30 H 0.050 0.950 31 H 0.090 0.910 32 H 0.138 0.862 33 H 0.161 0.839 34 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.146 10.755 8.616 13.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.135 5.135 2 C -0.095 4.095 3 C -0.117 4.117 4 C -0.063 4.063 5 N -0.243 5.243 6 C 0.063 3.937 7 C -0.552 4.552 8 H 0.082 0.918 9 C -0.142 4.142 10 N -0.535 5.535 11 Si 0.723 3.277 12 H -0.202 1.202 13 H -0.213 1.213 14 H -0.201 1.201 15 C -0.049 4.049 16 C -0.015 4.015 17 C -0.188 4.188 18 C -0.042 4.042 19 N -0.199 5.199 20 C 0.009 3.991 21 Cl -0.011 7.011 22 C -0.154 4.154 23 H 0.116 0.884 24 H 0.143 0.857 25 H 0.113 0.887 26 H 0.083 0.917 27 H 0.025 0.975 28 H 0.051 0.949 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.108 0.892 32 H 0.156 0.844 33 H 0.179 0.821 34 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -1.409 10.723 9.771 14.575 hybrid contribution 0.300 -0.915 -1.494 1.778 sum -1.109 9.808 8.276 12.881 Atomic orbital electron populations 1.81162 1.13127 1.09568 1.09624 1.29236 0.95231 0.92538 0.92543 1.20245 0.81669 1.03894 1.05858 1.22136 0.88956 1.01533 0.93657 1.62454 1.05294 1.12859 1.43670 1.19906 0.95504 0.94264 0.84072 1.21056 1.39203 0.92793 1.02113 0.91758 1.24935 0.95104 0.98783 0.95349 1.69918 1.41111 1.36203 1.06266 0.86597 0.78859 0.84927 0.77314 1.20239 1.21335 1.20089 1.21204 1.01660 0.91571 0.90514 1.20386 0.92499 0.92367 0.96237 1.22193 0.97647 0.99835 0.99165 1.22560 0.97564 0.96519 0.87600 1.66954 1.03159 1.14941 1.34830 1.21613 0.91628 0.97667 0.88187 1.98396 1.63307 1.95381 1.44032 1.21767 1.02359 1.00597 0.90687 0.88389 0.85695 0.88669 0.91720 0.97491 0.94936 0.92697 0.93231 0.89188 0.84385 0.82141 0.83477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -7.79 18.54 42.16 0.78 -7.01 16 2 C 0.22 3.30 15.43 -20.76 -0.32 2.98 16 3 C -0.07 -1.00 5.02 -29.52 -0.15 -1.14 16 4 C 0.07 1.02 4.78 -3.82 -0.02 1.00 16 5 N -0.52 -8.69 4.69 -237.52 -1.11 -9.80 16 6 C 0.19 3.94 4.49 -4.98 -0.02 3.92 16 7 C -0.51 -12.57 8.40 -34.44 -0.29 -12.86 16 8 H 0.06 1.59 7.30 -52.48 -0.38 1.21 16 9 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 10 N -0.90 -24.06 13.29 55.43 0.74 -23.33 16 11 Si 0.90 20.24 29.54 -169.99 -5.02 15.22 16 12 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 13 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 14 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 15 C 0.08 1.03 4.97 -4.98 -0.02 1.00 16 16 C -0.01 -0.07 4.90 -104.33 -0.51 -0.59 16 17 C -0.17 -1.81 8.07 -39.44 -0.32 -2.13 16 18 C 0.11 1.27 11.18 -17.56 -0.20 1.07 16 19 N -0.49 -6.51 10.34 -10.36 -0.11 -6.61 16 20 C 0.17 2.28 7.27 -17.44 -0.13 2.15 16 21 Cl -0.04 -0.48 29.11 -51.86 -1.51 -1.99 16 22 C -0.13 -1.68 9.59 -39.40 -0.38 -2.05 16 23 H 0.10 1.03 5.80 -51.93 -0.30 0.73 16 24 H 0.13 1.91 6.34 -51.93 -0.33 1.58 16 25 H 0.09 1.67 6.94 -51.93 -0.36 1.31 16 26 H 0.06 0.89 5.97 -51.93 -0.31 0.58 16 27 H 0.01 0.16 6.04 -51.93 -0.31 -0.15 16 28 H 0.03 0.75 7.93 -51.93 -0.41 0.33 16 29 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 30 H 0.05 0.57 6.05 -51.93 -0.31 0.26 16 31 H 0.09 1.17 7.89 -51.93 -0.41 0.76 16 32 H 0.14 1.23 7.51 -52.49 -0.39 0.84 16 33 H 0.16 1.32 8.06 -52.49 -0.42 0.89 16 34 H 0.15 1.73 8.06 -52.49 -0.42 1.31 16 LS Contribution 308.59 15.07 4.65 4.65 Total: -1.00 -28.16 308.59 -7.54 -35.71 By element: Atomic # 1 Polarization: 1.87 SS G_CDS: -3.51 Total: -1.64 kcal Atomic # 6 Polarization: -2.75 SS G_CDS: -2.45 Total: -5.21 kcal Atomic # 7 Polarization: -47.04 SS G_CDS: 0.30 Total: -46.75 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Atomic # 17 Polarization: -0.48 SS G_CDS: -1.51 Total: -1.99 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -28.16 -7.54 -35.71 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172624005.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.621 kcal (2) G-P(sol) polarization free energy of solvation -28.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds