Wall clock time and date at job start Wed Apr 15 2020 11:43:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.47192 * 179.97438 * 2 1 4 4 C 1.53007 * 109.46964 * 302.39066 * 3 2 1 5 5 N 1.46901 * 109.46944 * 180.88578 * 4 3 2 6 6 C 1.46897 * 110.99878 * 299.18153 * 5 4 3 7 7 C 1.50700 * 109.47164 * 293.91318 * 6 5 4 8 8 H 1.08003 * 119.99890 * 355.02610 * 7 6 5 9 9 C 1.37876 * 120.00264 * 175.03247 * 7 6 5 10 10 N 1.31516 * 119.99709 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 120.00257 * 179.97438 * 9 7 6 12 12 H 1.48507 * 109.47105 * 59.99731 * 11 9 7 13 13 H 1.48503 * 109.47285 * 179.97438 * 11 9 7 14 14 H 1.48492 * 109.47184 * 299.99733 * 11 9 7 15 15 C 1.46897 * 111.00382 * 63.13911 * 5 4 3 16 16 C 1.50697 * 109.47464 * 66.04069 * 15 5 4 17 17 C 1.38712 * 120.78659 * 269.98058 * 16 15 5 18 18 C 1.38143 * 119.19563 * 180.02562 * 17 16 15 19 19 N 1.31903 * 120.78429 * 0.02562 * 18 17 16 20 20 C 1.31957 * 121.70399 * 359.68655 * 19 18 17 21 21 Cl 1.73596 * 119.63373 * 180.28880 * 20 19 18 22 22 C 1.38396 * 120.73035 * 0.57401 * 20 19 18 23 23 H 1.08993 * 109.47714 * 182.38752 * 3 2 1 24 24 H 1.08996 * 109.47185 * 62.38427 * 3 2 1 25 25 H 1.08996 * 109.47243 * 60.88189 * 4 3 2 26 26 H 1.09000 * 109.46599 * 300.88058 * 4 3 2 27 27 H 1.08998 * 109.47353 * 53.91144 * 6 5 4 28 28 H 1.09000 * 109.46933 * 173.91435 * 6 5 4 29 29 H 0.97000 * 119.99938 * 180.02562 * 10 9 7 30 30 H 1.09007 * 109.46607 * 306.04433 * 15 5 4 31 31 H 1.09001 * 109.47592 * 186.04679 * 15 5 4 32 32 H 1.08002 * 120.39933 * 0.02562 * 17 16 15 33 33 H 1.08001 * 119.60530 * 180.02562 * 18 17 16 34 34 H 1.08001 * 120.42657 * 179.73020 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1183 -0.7719 1.2181 5 7 4.5872 -0.7532 1.2296 6 6 5.1312 -1.3930 0.0244 7 6 4.7921 -2.8613 0.0386 8 1 4.2995 -3.2935 0.8970 9 6 5.1108 -3.6529 -1.0444 10 7 5.7103 -3.1265 -2.0899 11 14 4.6911 -5.4730 -1.0266 12 1 3.2230 -5.6411 -0.8790 13 1 5.1346 -6.0958 -2.2997 14 1 5.3814 -6.1291 0.1127 15 6 5.0952 0.6177 1.3729 16 6 4.7191 1.1536 2.7302 17 6 3.5235 1.8309 2.9199 18 6 3.2120 2.3087 4.1780 19 7 4.0360 2.1279 5.1920 20 6 5.1790 1.4838 5.0504 21 17 6.2196 1.2701 6.4233 22 6 5.5600 0.9819 3.8182 23 1 2.9709 1.0275 0.0428 24 1 2.9715 -0.4755 -0.9106 25 1 2.7684 -1.8029 1.1672 26 1 2.7419 -0.3049 2.1283 27 1 4.6973 -0.9284 -0.8610 28 1 6.2141 -1.2704 0.0054 29 1 5.9342 -3.6833 -2.8520 30 1 4.6588 1.2495 0.5992 31 1 6.1804 0.6156 1.2709 32 1 2.8445 1.9827 2.0938 33 1 2.2826 2.8366 4.3332 34 1 6.4985 0.4593 3.7069 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172624005.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:10 Heat of formation + Delta-G solvation = 41.113208 kcal Electronic energy + Delta-G solvation = -18827.972166 eV Core-core repulsion = 15786.160875 eV Total energy + Delta-G solvation = -3041.811291 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.083 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.34487 -39.24476 -37.59570 -37.32165 -34.91159 -33.88564 -32.05997 -31.63115 -29.26010 -26.97313 -25.41722 -24.45893 -23.24402 -21.30582 -18.90461 -18.25095 -17.70116 -17.61263 -16.95187 -16.72982 -16.23612 -15.72125 -15.50848 -15.07701 -14.96902 -14.88747 -14.37585 -13.79151 -13.53122 -13.44552 -13.10371 -12.97902 -12.82818 -12.70242 -12.60097 -12.44459 -12.32994 -12.25493 -11.90585 -11.50906 -11.29227 -10.67051 -10.58302 -10.49387 -9.90307 -8.93223 -8.12317 -6.18025 -0.00649 0.19427 0.86014 1.46045 1.47876 1.53827 1.79317 1.82746 2.45210 2.65649 3.03544 3.22877 3.44562 3.58649 3.78250 3.96923 4.08513 4.13040 4.20720 4.29306 4.51756 4.57753 4.76600 4.80152 4.91515 4.94624 5.17683 5.34492 5.42579 5.44603 5.59556 5.74982 6.15179 6.32233 6.60803 6.67039 6.75858 6.97778 7.50890 8.96691 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.015596 B = 0.004928 C = 0.004066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1794.854405 B = 5680.221179 C = 6884.424694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C 0.244 3.756 3 C -0.063 4.063 4 C 0.072 3.928 5 N -0.530 5.530 6 C 0.200 3.800 7 C -0.516 4.516 8 H 0.057 0.943 9 C 0.015 3.985 10 N -0.926 5.926 11 Si 0.945 3.055 12 H -0.275 1.275 13 H -0.288 1.288 14 H -0.274 1.274 15 C 0.081 3.919 16 C -0.012 4.012 17 C -0.159 4.159 18 C 0.113 3.887 19 N -0.507 5.507 20 C 0.159 3.841 21 Cl -0.040 7.040 22 C -0.140 4.140 23 H 0.136 0.864 24 H 0.109 0.891 25 H 0.066 0.934 26 H 0.085 0.915 27 H 0.004 0.996 28 H 0.011 0.989 29 H 0.262 0.738 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.164 0.836 33 H 0.191 0.809 34 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.676 11.794 8.984 14.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.171 5.171 2 C -0.073 4.073 3 C -0.104 4.104 4 C -0.058 4.058 5 N -0.253 5.253 6 C 0.075 3.925 7 C -0.555 4.555 8 H 0.076 0.924 9 C -0.184 4.184 10 N -0.566 5.566 11 Si 0.772 3.228 12 H -0.200 1.200 13 H -0.214 1.214 14 H -0.200 1.200 15 C -0.046 4.046 16 C -0.021 4.021 17 C -0.179 4.179 18 C -0.043 4.043 19 N -0.219 5.219 20 C -0.005 4.005 21 Cl -0.012 7.012 22 C -0.162 4.162 23 H 0.154 0.846 24 H 0.126 0.874 25 H 0.085 0.915 26 H 0.103 0.897 27 H 0.021 0.979 28 H 0.029 0.971 29 H 0.071 0.929 30 H 0.092 0.908 31 H 0.106 0.894 32 H 0.181 0.819 33 H 0.208 0.792 34 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -2.233 11.765 10.160 15.704 hybrid contribution 0.552 -1.189 -1.544 2.025 sum -1.681 10.576 8.616 13.744 Atomic orbital electron populations 1.81195 1.14253 1.10965 1.10737 1.29340 0.95188 0.91319 0.91438 1.20191 0.80564 1.05603 1.04073 1.22036 0.87984 1.00496 0.95333 1.62235 1.06206 1.15426 1.41408 1.19544 0.94244 0.92969 0.85756 1.21407 1.37904 0.94775 1.01390 0.92438 1.25562 0.95451 1.01962 0.95413 1.70004 1.42622 1.37199 1.06805 0.85802 0.78571 0.81352 0.77069 1.19995 1.21389 1.19981 1.21209 1.01731 0.89813 0.91871 1.20309 0.93262 0.93145 0.95390 1.22443 0.97096 0.98513 0.99875 1.23105 0.98054 0.95976 0.87181 1.66989 1.03525 1.15395 1.36023 1.21713 0.91992 0.98311 0.88435 1.98389 1.63349 1.95416 1.44011 1.21845 1.02705 1.00759 0.90858 0.84603 0.87356 0.91503 0.89698 0.97865 0.97078 0.92928 0.90800 0.89425 0.81860 0.79187 0.83412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -15.94 18.54 20.00 0.37 -15.57 16 2 C 0.24 6.69 15.43 89.44 1.38 8.07 16 3 C -0.06 -1.51 5.02 28.79 0.14 -1.36 16 4 C 0.07 2.02 4.78 86.31 0.41 2.44 16 5 N -0.53 -16.95 4.69 -905.37 -4.25 -21.20 16 6 C 0.20 8.37 4.49 85.56 0.38 8.76 16 7 C -0.52 -25.27 8.40 25.60 0.22 -25.06 16 8 H 0.06 2.84 7.30 -2.91 -0.02 2.82 16 9 C 0.01 0.77 5.46 84.65 0.46 1.23 16 10 N -0.93 -49.98 13.29 21.45 0.28 -49.70 16 11 Si 0.95 41.51 29.54 68.60 2.03 43.54 16 12 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 13 H -0.29 -12.59 7.11 99.48 0.71 -11.89 16 14 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 15 C 0.08 1.93 4.97 85.56 0.42 2.36 16 16 C -0.01 -0.27 4.90 -19.67 -0.10 -0.37 16 17 C -0.16 -2.85 8.07 22.36 0.18 -2.67 16 18 C 0.11 2.14 11.18 84.66 0.95 3.09 16 19 N -0.51 -12.52 10.34 -186.69 -1.93 -14.45 16 20 C 0.16 3.97 7.27 84.71 0.62 4.59 16 21 Cl -0.04 -0.94 29.11 -2.72 -0.08 -1.02 16 22 C -0.14 -3.35 9.59 22.39 0.21 -3.13 16 23 H 0.14 2.25 5.80 -2.39 -0.01 2.24 16 24 H 0.11 3.13 6.34 -2.39 -0.02 3.11 16 25 H 0.07 2.29 6.94 -2.39 -0.02 2.27 16 26 H 0.08 2.08 5.97 -2.39 -0.01 2.06 16 27 H 0.00 0.16 6.04 -2.39 -0.01 0.14 16 28 H 0.01 0.51 7.93 -2.39 -0.02 0.49 16 29 H 0.26 13.66 8.31 -92.71 -0.77 12.89 16 30 H 0.07 1.42 6.05 -2.38 -0.01 1.41 16 31 H 0.09 2.16 7.89 -2.39 -0.02 2.14 16 32 H 0.16 2.07 7.51 -2.91 -0.02 2.05 16 33 H 0.19 2.34 8.06 -2.91 -0.02 2.32 16 34 H 0.15 3.39 8.06 -2.91 -0.02 3.37 16 Total: -1.00 -60.22 308.59 2.84 -57.38 By element: Atomic # 1 Polarization: 1.95 SS G_CDS: 1.13 Total: 3.08 kcal Atomic # 6 Polarization: -7.34 SS G_CDS: 5.29 Total: -2.06 kcal Atomic # 7 Polarization: -95.39 SS G_CDS: -5.52 Total: -100.92 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 2.03 Total: 43.54 kcal Atomic # 17 Polarization: -0.94 SS G_CDS: -0.08 Total: -1.02 kcal Total: -60.22 2.84 -57.38 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172624005.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.493 kcal (2) G-P(sol) polarization free energy of solvation -60.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds