Wall clock time and date at job start Wed Apr 15 2020 11:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.52999 * 109.46933 * 209.43289 * 3 2 1 5 5 N 1.46903 * 109.47085 * 173.65690 * 4 3 2 6 6 C 1.46901 * 110.99954 * 67.33981 * 5 4 3 7 7 C 1.50694 * 109.46847 * 285.15088 * 6 5 4 8 8 H 1.08000 * 120.00635 * 358.54578 * 7 6 5 9 9 C 1.37881 * 119.99730 * 178.55360 * 7 6 5 10 10 N 1.31512 * 120.00172 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 119.99913 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47020 * 89.99668 * 11 9 7 13 13 H 1.48502 * 109.47122 * 209.99384 * 11 9 7 14 14 H 1.48495 * 109.47296 * 329.99777 * 11 9 7 15 15 C 1.46901 * 111.00002 * 191.29296 * 5 4 3 16 16 C 1.50701 * 109.47164 * 68.10008 * 15 5 4 17 17 C 1.38650 * 120.79544 * 93.01793 * 16 15 5 18 18 C 1.38183 * 119.17737 * 180.02562 * 17 16 15 19 19 N 1.31886 * 120.79581 * 359.97438 * 18 17 16 20 20 C 1.31844 * 121.73736 * 359.97438 * 19 18 17 21 21 C 1.38349 * 120.74585 * 0.02562 * 20 19 18 22 22 Cl 1.73595 * 120.43457 * 179.97438 * 21 20 19 23 23 H 1.08996 * 109.47275 * 89.43469 * 3 2 1 24 24 H 1.08999 * 109.47148 * 329.42765 * 3 2 1 25 25 H 1.09005 * 109.47372 * 53.65724 * 4 3 2 26 26 H 1.09001 * 109.47440 * 293.65269 * 4 3 2 27 27 H 1.09002 * 109.47002 * 45.15047 * 6 5 4 28 28 H 1.08998 * 109.47203 * 165.14966 * 6 5 4 29 29 H 0.96999 * 120.00136 * 179.97438 * 10 9 7 30 30 H 1.08999 * 109.46946 * 308.09723 * 15 5 4 31 31 H 1.08998 * 109.47264 * 188.09994 * 15 5 4 32 32 H 1.08003 * 120.40956 * 0.03796 * 17 16 15 33 33 H 1.07998 * 119.60316 * 179.72157 * 18 17 16 34 34 H 1.08002 * 119.62808 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1174 1.2572 0.7089 5 7 4.5785 1.1852 0.8435 6 6 5.2328 1.2675 -0.4691 7 6 5.0676 -0.0423 -1.1957 8 1 4.5507 -0.8625 -0.7198 9 6 5.5766 -0.1938 -2.4682 10 7 6.2058 0.8050 -3.0479 11 14 5.3724 -1.8177 -3.3686 12 1 4.1070 -1.7973 -4.1453 13 1 6.5173 -2.0185 -4.2929 14 1 5.3308 -2.9281 -2.3836 15 6 5.0762 2.2316 1.7464 16 6 4.6159 1.9429 3.1521 17 6 5.4152 1.2231 4.0270 18 6 4.9598 0.9771 5.3082 19 7 3.7811 1.4184 5.7022 20 6 2.9943 2.1068 4.8989 21 6 3.3827 2.3919 3.6020 22 17 2.3400 3.2984 2.5510 23 1 2.9714 -0.0093 -1.0276 24 1 2.9717 -0.8840 0.5227 25 1 2.6643 1.3254 1.6979 26 1 2.8494 2.1377 0.1249 27 1 4.7766 2.0670 -1.0530 28 1 6.2940 1.4765 -0.3336 29 1 6.5642 0.6983 -3.9429 30 1 4.6889 3.1998 1.4289 31 1 6.1656 2.2488 1.7172 32 1 6.3818 0.8593 3.7110 33 1 5.5748 0.4133 5.9939 34 1 2.0354 2.4514 5.2570 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174845211.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:14 Heat of formation + Delta-G solvation = 66.531536 kcal Electronic energy + Delta-G solvation = -19204.207688 eV Core-core repulsion = 16163.498618 eV Total energy + Delta-G solvation = -3040.709070 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.083 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.35737 -37.66595 -36.60599 -35.91054 -33.45362 -32.37821 -31.05728 -30.54826 -27.73105 -25.62540 -23.76969 -23.07855 -22.05827 -20.28636 -17.66554 -16.82629 -16.68656 -16.01855 -15.84314 -15.33621 -14.72036 -14.42433 -14.19329 -13.96353 -13.61568 -13.39876 -12.86271 -12.47081 -12.22995 -12.17342 -12.05207 -11.97524 -11.47842 -11.27262 -10.99331 -10.86536 -10.75065 -10.61975 -10.32518 -9.86455 -9.63872 -9.41676 -9.29143 -8.95916 -8.54463 -7.55643 -6.17395 -4.18415 0.89661 1.12554 2.02196 3.21272 3.23510 3.28909 3.32320 3.34231 3.62480 4.28100 4.35848 4.45163 4.60115 4.67309 4.92003 5.09683 5.19762 5.27730 5.50164 5.62288 5.63975 5.77590 5.83725 5.96553 6.08434 6.23032 6.47217 6.47867 6.74525 6.99432 7.15060 7.61489 7.77815 7.85301 7.95043 8.05935 8.30379 8.86611 9.44596 10.92501 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.018072 B = 0.005759 C = 0.005069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.020577 B = 4860.932497 C = 5522.207233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C 0.220 3.780 3 C -0.041 4.041 4 C 0.067 3.933 5 N -0.525 5.525 6 C 0.189 3.811 7 C -0.517 4.517 8 H 0.076 0.924 9 C 0.060 3.940 10 N -0.892 5.892 11 Si 0.891 3.109 12 H -0.280 1.280 13 H -0.286 1.286 14 H -0.270 1.270 15 C 0.084 3.916 16 C -0.010 4.010 17 C -0.140 4.140 18 C 0.097 3.903 19 N -0.478 5.478 20 C 0.109 3.891 21 C -0.091 4.091 22 Cl -0.050 7.050 23 H 0.148 0.852 24 H 0.109 0.891 25 H 0.068 0.932 26 H 0.035 0.965 27 H 0.000 1.000 28 H 0.032 0.968 29 H 0.263 0.737 30 H 0.048 0.952 31 H 0.091 0.909 32 H 0.147 0.853 33 H 0.161 0.839 34 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.726 3.268 12.727 13.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.151 5.151 2 C -0.097 4.097 3 C -0.081 4.081 4 C -0.063 4.063 5 N -0.250 5.250 6 C 0.064 3.936 7 C -0.555 4.555 8 H 0.094 0.906 9 C -0.143 4.143 10 N -0.530 5.530 11 Si 0.718 3.282 12 H -0.206 1.206 13 H -0.212 1.212 14 H -0.195 1.195 15 C -0.043 4.043 16 C -0.019 4.019 17 C -0.161 4.161 18 C -0.059 4.059 19 N -0.188 5.188 20 C -0.048 4.048 21 C -0.121 4.121 22 Cl -0.022 7.022 23 H 0.166 0.834 24 H 0.127 0.873 25 H 0.086 0.914 26 H 0.053 0.947 27 H 0.018 0.982 28 H 0.050 0.950 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.109 0.891 32 H 0.165 0.835 33 H 0.178 0.822 34 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -2.560 2.770 13.498 14.015 hybrid contribution 0.444 0.179 -1.964 2.021 sum -2.116 2.949 11.534 12.092 Atomic orbital electron populations 1.81097 1.13456 1.09801 1.10776 1.29915 0.95842 0.92146 0.91772 1.20145 0.79046 1.00987 1.07948 1.22195 0.89555 0.95299 0.99257 1.62183 1.03710 1.43989 1.15109 1.19882 0.94227 0.97311 0.82131 1.21315 1.36582 0.98486 0.99151 0.90639 1.24987 0.95084 0.96617 0.97598 1.69941 1.37027 1.31172 1.14904 0.86603 0.77837 0.83924 0.79819 1.20562 1.21211 1.19501 1.21108 1.00973 0.94750 0.87516 1.20390 0.91368 0.93014 0.97172 1.22115 1.01753 0.98394 0.93810 1.22857 0.92274 0.96188 0.94554 1.67787 1.05117 1.09928 1.35938 1.22688 0.99339 0.94627 0.88190 1.22085 0.94144 1.02084 0.93751 1.98382 1.65568 1.72594 1.65614 0.83448 0.87282 0.91355 0.94693 0.98171 0.95022 0.92720 0.93401 0.89089 0.83526 0.82206 0.82280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -9.08 18.54 42.15 0.78 -8.30 16 2 C 0.22 3.87 15.43 -20.76 -0.32 3.55 16 3 C -0.04 -0.70 4.26 -29.52 -0.13 -0.83 16 4 C 0.07 1.12 3.44 -3.82 -0.01 1.11 16 5 N -0.53 -9.36 4.50 -237.51 -1.07 -10.43 16 6 C 0.19 4.15 4.73 -4.98 -0.02 4.12 16 7 C -0.52 -12.23 6.74 -34.44 -0.23 -12.46 16 8 H 0.08 1.70 5.60 -52.49 -0.29 1.41 16 9 C 0.06 1.51 5.46 -17.82 -0.10 1.41 16 10 N -0.89 -24.03 13.29 55.43 0.74 -23.30 16 11 Si 0.89 19.62 29.54 -169.99 -5.02 14.60 16 12 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 13 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 14 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 15 C 0.08 1.27 4.94 -4.98 -0.02 1.25 16 16 C -0.01 -0.14 5.07 -104.28 -0.53 -0.67 16 17 C -0.14 -1.63 9.81 -39.45 -0.39 -2.01 16 18 C 0.10 1.07 11.18 -17.55 -0.20 0.87 16 19 N -0.48 -6.04 10.36 -13.22 -0.14 -6.18 16 20 C 0.11 1.34 10.99 -17.51 -0.19 1.15 16 21 C -0.09 -1.19 5.33 -39.35 -0.21 -1.40 16 22 Cl -0.05 -0.67 24.10 -51.86 -1.25 -1.92 16 23 H 0.15 2.81 5.47 -51.93 -0.28 2.53 16 24 H 0.11 1.76 7.64 -51.93 -0.40 1.36 16 25 H 0.07 1.09 4.18 -51.93 -0.22 0.87 16 26 H 0.03 0.62 7.69 -51.93 -0.40 0.22 16 27 H 0.00 0.01 7.87 -51.93 -0.41 -0.40 16 28 H 0.03 0.74 7.72 -51.93 -0.40 0.34 16 29 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 30 H 0.05 0.73 7.11 -51.93 -0.37 0.36 16 31 H 0.09 1.31 7.73 -51.93 -0.40 0.91 16 32 H 0.15 1.46 8.06 -52.48 -0.42 1.04 16 33 H 0.16 1.26 8.06 -52.49 -0.42 0.84 16 34 H 0.16 1.62 8.06 -52.49 -0.42 1.20 16 LS Contribution 302.51 15.07 4.56 4.56 Total: -1.00 -27.62 302.51 -7.32 -34.94 By element: Atomic # 1 Polarization: 3.50 SS G_CDS: -3.57 Total: -0.07 kcal Atomic # 6 Polarization: -1.56 SS G_CDS: -2.35 Total: -3.91 kcal Atomic # 7 Polarization: -48.51 SS G_CDS: 0.31 Total: -48.20 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.02 Total: 14.60 kcal Atomic # 17 Polarization: -0.67 SS G_CDS: -1.25 Total: -1.92 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -27.62 -7.32 -34.94 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174845211.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.473 kcal (2) G-P(sol) polarization free energy of solvation -27.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds