Wall clock time and date at job start Wed Apr 15 2020 11:43:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.52999 * 109.46933 * 209.43289 * 3 2 1 5 5 N 1.46903 * 109.47085 * 173.65690 * 4 3 2 6 6 C 1.46901 * 110.99954 * 67.33981 * 5 4 3 7 7 C 1.50694 * 109.46847 * 285.15088 * 6 5 4 8 8 H 1.08000 * 120.00635 * 358.54578 * 7 6 5 9 9 C 1.37881 * 119.99730 * 178.55360 * 7 6 5 10 10 N 1.31512 * 120.00172 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 119.99913 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47020 * 89.99668 * 11 9 7 13 13 H 1.48502 * 109.47122 * 209.99384 * 11 9 7 14 14 H 1.48495 * 109.47296 * 329.99777 * 11 9 7 15 15 C 1.46901 * 111.00002 * 191.29296 * 5 4 3 16 16 C 1.50701 * 109.47164 * 68.10008 * 15 5 4 17 17 C 1.38650 * 120.79544 * 93.01793 * 16 15 5 18 18 C 1.38183 * 119.17737 * 180.02562 * 17 16 15 19 19 N 1.31886 * 120.79581 * 359.97438 * 18 17 16 20 20 C 1.31844 * 121.73736 * 359.97438 * 19 18 17 21 21 C 1.38349 * 120.74585 * 0.02562 * 20 19 18 22 22 Cl 1.73595 * 120.43457 * 179.97438 * 21 20 19 23 23 H 1.08996 * 109.47275 * 89.43469 * 3 2 1 24 24 H 1.08999 * 109.47148 * 329.42765 * 3 2 1 25 25 H 1.09005 * 109.47372 * 53.65724 * 4 3 2 26 26 H 1.09001 * 109.47440 * 293.65269 * 4 3 2 27 27 H 1.09002 * 109.47002 * 45.15047 * 6 5 4 28 28 H 1.08998 * 109.47203 * 165.14966 * 6 5 4 29 29 H 0.96999 * 120.00136 * 179.97438 * 10 9 7 30 30 H 1.08999 * 109.46946 * 308.09723 * 15 5 4 31 31 H 1.08998 * 109.47264 * 188.09994 * 15 5 4 32 32 H 1.08003 * 120.40956 * 0.03796 * 17 16 15 33 33 H 1.07998 * 119.60316 * 179.72157 * 18 17 16 34 34 H 1.08002 * 119.62808 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1174 1.2572 0.7089 5 7 4.5785 1.1852 0.8435 6 6 5.2328 1.2675 -0.4691 7 6 5.0676 -0.0423 -1.1957 8 1 4.5507 -0.8625 -0.7198 9 6 5.5766 -0.1938 -2.4682 10 7 6.2058 0.8050 -3.0479 11 14 5.3724 -1.8177 -3.3686 12 1 4.1070 -1.7973 -4.1453 13 1 6.5173 -2.0185 -4.2929 14 1 5.3308 -2.9281 -2.3836 15 6 5.0762 2.2316 1.7464 16 6 4.6159 1.9429 3.1521 17 6 5.4152 1.2231 4.0270 18 6 4.9598 0.9771 5.3082 19 7 3.7811 1.4184 5.7022 20 6 2.9943 2.1068 4.8989 21 6 3.3827 2.3919 3.6020 22 17 2.3400 3.2984 2.5510 23 1 2.9714 -0.0093 -1.0276 24 1 2.9717 -0.8840 0.5227 25 1 2.6643 1.3254 1.6979 26 1 2.8494 2.1377 0.1249 27 1 4.7766 2.0670 -1.0530 28 1 6.2940 1.4765 -0.3336 29 1 6.5642 0.6983 -3.9429 30 1 4.6889 3.1998 1.4289 31 1 6.1656 2.2488 1.7172 32 1 6.3818 0.8593 3.7110 33 1 5.5748 0.4133 5.9939 34 1 2.0354 2.4514 5.2570 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174845211.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:13 Heat of formation + Delta-G solvation = 50.420361 kcal Electronic energy + Delta-G solvation = -19204.906321 eV Core-core repulsion = 16163.498618 eV Total energy + Delta-G solvation = -3041.407703 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.083 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.33498 -39.05542 -37.67446 -37.35689 -34.93039 -33.90153 -31.97900 -31.93821 -29.38737 -26.95425 -25.07437 -24.31142 -23.29942 -21.70391 -19.24423 -17.90666 -17.71199 -17.49302 -16.92195 -16.77785 -16.38333 -15.72985 -15.63998 -14.90265 -14.81510 -14.75358 -14.30887 -13.94215 -13.69959 -13.54630 -13.39912 -13.26885 -12.84876 -12.64111 -12.48828 -12.39618 -12.27172 -12.02672 -11.92944 -11.31215 -11.08287 -10.56934 -10.53517 -10.45749 -9.91621 -9.07205 -8.09394 -6.14212 -0.03372 0.15041 1.02132 1.49764 1.53592 1.61142 1.77321 1.83970 2.47585 2.67988 3.01777 3.25444 3.47772 3.51867 3.72238 3.74743 3.98192 4.22294 4.29388 4.39760 4.51235 4.67336 4.73383 4.75671 4.86010 5.04092 5.17622 5.28110 5.33778 5.38559 5.59173 5.78795 6.13410 6.29609 6.55901 6.63196 6.86995 6.99419 7.52450 9.00968 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.018072 B = 0.005759 C = 0.005069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.020577 B = 4860.932497 C = 5522.207233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C 0.238 3.762 3 C -0.033 4.033 4 C 0.071 3.929 5 N -0.522 5.522 6 C 0.203 3.797 7 C -0.511 4.511 8 H 0.089 0.911 9 C 0.009 3.991 10 N -0.933 5.933 11 Si 0.947 3.053 12 H -0.280 1.280 13 H -0.293 1.293 14 H -0.257 1.257 15 C 0.086 3.914 16 C -0.024 4.024 17 C -0.138 4.138 18 C 0.103 3.897 19 N -0.491 5.491 20 C 0.108 3.892 21 C -0.100 4.100 22 Cl -0.059 7.059 23 H 0.130 0.870 24 H 0.125 0.875 25 H 0.083 0.917 26 H 0.024 0.976 27 H -0.028 1.028 28 H 0.013 0.987 29 H 0.260 0.740 30 H 0.044 0.956 31 H 0.096 0.904 32 H 0.164 0.836 33 H 0.194 0.806 34 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.802 2.026 14.417 14.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.175 5.175 2 C -0.078 4.078 3 C -0.073 4.073 4 C -0.059 4.059 5 N -0.246 5.246 6 C 0.077 3.923 7 C -0.549 4.549 8 H 0.107 0.893 9 C -0.189 4.189 10 N -0.573 5.573 11 Si 0.774 3.226 12 H -0.206 1.206 13 H -0.220 1.220 14 H -0.181 1.181 15 C -0.042 4.042 16 C -0.033 4.033 17 C -0.158 4.158 18 C -0.053 4.053 19 N -0.201 5.201 20 C -0.050 4.050 21 C -0.129 4.129 22 Cl -0.030 7.030 23 H 0.148 0.852 24 H 0.143 0.857 25 H 0.101 0.899 26 H 0.042 0.958 27 H -0.010 1.010 28 H 0.031 0.969 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.114 0.886 32 H 0.182 0.818 33 H 0.211 0.789 34 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -2.652 1.523 15.216 15.520 hybrid contribution 0.480 0.604 -2.382 2.504 sum -2.172 2.127 12.834 13.189 Atomic orbital electron populations 1.81120 1.14136 1.10715 1.11539 1.29856 0.95635 0.91314 0.90998 1.20029 0.78612 1.01694 1.06928 1.22189 0.89012 0.94799 0.99855 1.62089 1.03990 1.45369 1.13165 1.19555 0.93189 0.95779 0.83765 1.21703 1.35036 0.99231 0.98949 0.89291 1.25711 0.95258 0.99220 0.98731 1.70066 1.38924 1.33143 1.15197 0.85699 0.77215 0.80951 0.78761 1.20578 1.21961 1.18119 1.21094 1.01254 0.93724 0.88089 1.20281 0.92115 0.94509 0.96410 1.22343 1.02131 0.97563 0.93790 1.23394 0.91874 0.95277 0.94715 1.67871 1.05839 1.10230 1.36144 1.22953 0.99995 0.94278 0.87734 1.22152 0.94082 1.02536 0.94139 1.98379 1.65834 1.72850 1.65920 0.85245 0.85724 0.89868 0.95766 1.00979 0.96869 0.93087 0.93823 0.88607 0.81849 0.78914 0.80693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -18.45 18.54 20.01 0.37 -18.08 16 2 C 0.24 8.06 15.43 89.44 1.38 9.44 16 3 C -0.03 -1.07 4.26 28.79 0.12 -0.94 16 4 C 0.07 2.33 3.44 86.30 0.30 2.63 16 5 N -0.52 -18.21 4.50 -905.36 -4.07 -22.28 16 6 C 0.20 8.98 4.73 85.55 0.40 9.38 16 7 C -0.51 -23.92 6.74 25.60 0.17 -23.75 16 8 H 0.09 3.85 5.60 -2.91 -0.02 3.84 16 9 C 0.01 0.47 5.46 84.66 0.46 0.93 16 10 N -0.93 -51.13 13.29 21.45 0.28 -50.85 16 11 Si 0.95 39.93 29.54 68.60 2.03 41.96 16 12 H -0.28 -11.71 7.11 99.48 0.71 -11.01 16 13 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 14 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 15 C 0.09 2.52 4.94 85.56 0.42 2.95 16 16 C -0.02 -0.60 5.07 -19.65 -0.10 -0.70 16 17 C -0.14 -2.83 9.81 22.36 0.22 -2.61 16 18 C 0.10 1.93 11.18 84.67 0.95 2.88 16 19 N -0.49 -11.06 10.36 -195.75 -2.03 -13.09 16 20 C 0.11 2.41 10.99 84.72 0.93 3.34 16 21 C -0.10 -2.45 5.33 22.42 0.12 -2.33 16 22 Cl -0.06 -1.51 24.10 -2.72 -0.07 -1.57 16 23 H 0.13 4.83 5.47 -2.39 -0.01 4.81 16 24 H 0.12 3.72 7.64 -2.39 -0.02 3.70 16 25 H 0.08 2.53 4.18 -2.38 -0.01 2.52 16 26 H 0.02 0.85 7.69 -2.39 -0.02 0.84 16 27 H -0.03 -1.37 7.87 -2.39 -0.02 -1.39 16 28 H 0.01 0.63 7.72 -2.39 -0.02 0.61 16 29 H 0.26 13.75 8.31 -92.71 -0.77 12.98 16 30 H 0.04 1.32 7.11 -2.39 -0.02 1.30 16 31 H 0.10 2.69 7.73 -2.39 -0.02 2.67 16 32 H 0.16 2.76 8.06 -2.91 -0.02 2.73 16 33 H 0.19 2.22 8.06 -2.91 -0.02 2.20 16 34 H 0.18 3.21 8.06 -2.91 -0.02 3.18 16 Total: -1.00 -58.15 302.51 3.03 -55.12 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: 1.13 Total: 7.58 kcal Atomic # 6 Polarization: -4.16 SS G_CDS: 5.38 Total: 1.21 kcal Atomic # 7 Polarization: -98.85 SS G_CDS: -5.44 Total: -104.29 kcal Atomic # 14 Polarization: 39.93 SS G_CDS: 2.03 Total: 41.96 kcal Atomic # 17 Polarization: -1.51 SS G_CDS: -0.07 Total: -1.57 kcal Total: -58.15 3.03 -55.12 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174845211.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.541 kcal (2) G-P(sol) polarization free energy of solvation -58.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds