Wall clock time and date at job start Wed Apr 15 2020 11:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86802 * 119.99942 * 2 1 4 4 H 1.48496 * 109.47016 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46898 * 299.99789 * 3 2 1 6 6 H 1.48500 * 109.47178 * 59.99700 * 3 2 1 7 7 C 1.38799 * 120.00277 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00209 * 180.02562 * 7 2 1 9 9 S 1.76204 * 119.99685 * 0.02562 * 7 2 1 10 10 C 1.81002 * 99.99932 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.46922 * 180.02562 * 10 9 7 12 12 O 1.21274 * 120.00423 * 359.97438 * 11 10 9 13 13 N 1.34783 * 119.99922 * 180.02562 * 11 10 9 14 14 C 1.46919 * 120.63144 * 179.97438 * 13 11 10 15 15 C 1.53195 * 108.89273 * 233.55709 * 14 13 11 16 16 C 1.53070 * 109.29524 * 305.57804 * 15 14 13 17 17 C 1.52996 * 109.44404 * 181.23493 * 16 15 14 18 18 F 1.39901 * 109.47397 * 179.79354 * 17 16 15 19 19 F 1.39898 * 109.47044 * 299.79896 * 17 16 15 20 20 C 1.53039 * 109.65812 * 61.15209 * 16 15 14 21 21 C 1.46928 * 120.62874 * 0.02562 * 13 11 10 22 22 H 0.96997 * 119.99912 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.47163 * 59.99853 * 10 9 7 24 24 H 1.08997 * 109.47104 * 300.00354 * 10 9 7 25 25 H 1.09002 * 109.58751 * 353.41659 * 14 13 11 26 26 H 1.08996 * 109.58750 * 113.69843 * 14 13 11 27 27 H 1.08997 * 109.50046 * 65.38734 * 15 14 13 28 28 H 1.09003 * 109.49733 * 185.48713 * 15 14 13 29 29 H 1.09007 * 109.35101 * 301.12962 * 16 15 14 30 30 H 1.09003 * 109.46825 * 59.79972 * 17 16 15 31 31 H 1.09002 * 109.49876 * 178.74890 * 20 16 15 32 32 H 1.09005 * 109.52615 * 58.67140 * 20 16 15 33 33 H 1.08998 * 109.58787 * 246.16207 * 21 13 11 34 34 H 1.09007 * 109.58600 * 6.44520 * 21 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0104 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9874 -5.3027 -0.0001 12 8 0.7912 -5.5023 0.0000 13 7 2.8442 -6.3431 0.0003 14 6 2.3441 -7.7246 0.0003 15 6 2.9845 -8.4840 1.1666 16 6 4.5076 -8.3637 1.0730 17 6 5.1516 -9.1466 2.2189 18 9 6.5439 -9.0410 2.1312 19 9 4.7202 -8.6225 3.4421 20 6 4.9146 -6.8916 1.1694 21 6 4.2960 -6.1173 0.0019 22 1 -0.4850 0.8400 -0.0004 23 1 3.1245 -3.7313 0.8905 24 1 3.1245 -3.7313 -0.8894 25 1 1.2605 -7.7210 0.1176 26 1 2.6082 -8.2088 -0.9399 27 1 2.6449 -8.0558 2.1097 28 1 2.6966 -9.5342 1.1187 29 1 4.8443 -8.7719 0.1200 30 1 4.8618 -10.1952 2.1503 31 1 6.0007 -6.8107 1.1248 32 1 4.5573 -6.4757 2.1115 33 1 4.7219 -6.4708 -0.9371 34 1 4.5001 -5.0528 0.1179 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362109907.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:17 Heat of formation + Delta-G solvation = -150.944423 kcal Electronic energy + Delta-G solvation = -19644.964107 eV Core-core repulsion = 16146.179092 eV Total energy + Delta-G solvation = -3498.785015 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.085 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.22468 -47.19876 -39.94483 -37.37587 -33.58118 -32.43331 -31.61326 -29.30580 -27.30920 -25.49107 -23.75189 -23.28315 -20.93950 -19.17640 -17.80891 -17.56383 -17.36215 -17.04524 -16.26445 -15.64096 -15.35043 -14.80914 -14.61821 -14.25941 -13.93052 -13.81638 -13.58527 -13.32609 -13.31078 -12.94241 -12.69732 -12.45719 -12.28489 -11.91062 -11.48077 -11.24931 -11.07308 -11.02966 -10.93152 -10.75159 -10.70745 -9.79917 -9.38683 -9.07860 -8.59540 -8.23064 -6.50885 -6.22224 -3.92907 2.89756 3.01183 3.21461 3.25725 3.30949 3.49044 3.58264 3.89224 4.07655 4.12031 4.19911 4.62513 4.67429 4.90731 4.95601 4.97200 5.06709 5.13137 5.23343 5.37142 5.41976 5.52037 5.53987 5.62735 5.79284 5.85273 5.86951 6.01662 6.10297 6.58916 7.50696 7.59537 8.34912 8.52623 9.23290 10.85281 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.029403 B = 0.003762 C = 0.003503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.070476 B = 7441.486375 C = 7991.765755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.062 6.062 10 C -0.151 4.151 11 C 0.536 3.464 12 O -0.516 6.516 13 N -0.622 5.622 14 C 0.116 3.884 15 C -0.130 4.130 16 C -0.137 4.137 17 C 0.265 3.735 18 F -0.207 7.207 19 F -0.203 7.203 20 C -0.135 4.135 21 C 0.112 3.888 22 H 0.268 0.732 23 H 0.090 0.910 24 H 0.089 0.911 25 H 0.098 0.902 26 H 0.065 0.935 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.102 0.898 30 H 0.109 0.891 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.890 -19.259 1.418 22.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.165 5.835 10 C -0.302 4.302 11 C 0.324 3.676 12 O -0.390 6.390 13 N -0.358 5.358 14 C -0.007 4.007 15 C -0.169 4.169 16 C -0.156 4.156 17 C 0.211 3.789 18 F -0.188 7.188 19 F -0.184 7.184 20 C -0.173 4.173 21 C -0.012 4.012 22 H 0.078 0.922 23 H 0.108 0.892 24 H 0.108 0.892 25 H 0.116 0.884 26 H 0.083 0.917 27 H 0.097 0.903 28 H 0.098 0.902 29 H 0.120 0.880 30 H 0.126 0.874 31 H 0.101 0.899 32 H 0.097 0.903 33 H 0.087 0.913 34 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 9.957 -19.419 1.441 21.871 hybrid contribution 2.200 1.255 0.124 2.536 sum 12.157 -18.164 1.565 21.913 Atomic orbital electron populations 1.70028 1.05959 1.27353 1.46934 1.24991 0.95019 0.99029 0.94514 0.86117 0.79593 0.81881 0.77913 1.19606 1.20554 1.20554 1.22899 0.94920 0.91597 1.58871 0.90883 1.85407 1.04995 0.96400 1.96696 1.23558 1.06507 0.95369 1.04724 1.20346 0.86187 0.86223 0.74827 1.90688 1.15183 1.85216 1.47942 1.48125 1.06333 1.05765 1.75627 1.21436 1.00929 0.81304 0.97037 1.21953 0.92659 1.01289 1.00978 1.22300 0.97426 0.97550 0.98344 1.21979 0.75619 0.99286 0.82001 1.92976 1.31963 1.97552 1.96321 1.92990 1.89369 1.89096 1.46952 1.21959 1.01468 0.93360 1.00543 1.21654 0.80020 1.01731 0.97785 0.92231 0.89222 0.89243 0.88394 0.91667 0.90267 0.90181 0.88011 0.87378 0.89875 0.90322 0.91295 0.88753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.15 13.22 55.49 0.73 -25.42 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.38 29.55 -169.99 -5.02 16.36 16 4 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.53 -15.21 9.50 30.94 0.29 -14.91 16 8 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 9 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 10 C -0.15 -3.06 4.50 36.00 0.16 -2.90 16 11 C 0.54 10.11 7.72 -10.98 -0.08 10.02 16 12 O -0.52 -11.70 15.27 5.56 0.08 -11.61 16 13 N -0.62 -8.52 2.98 -172.80 -0.51 -9.03 16 14 C 0.12 1.28 6.43 -3.71 -0.02 1.25 16 15 C -0.13 -1.09 5.24 -26.59 -0.14 -1.23 16 16 C -0.14 -1.03 2.32 -90.57 -0.21 -1.24 16 17 C 0.26 1.99 4.87 37.16 0.18 2.17 16 18 F -0.21 -1.91 16.79 2.25 0.04 -1.87 16 19 F -0.20 -2.10 16.35 2.25 0.04 -2.06 16 20 C -0.14 -1.24 5.12 -26.64 -0.14 -1.38 16 21 C 0.11 1.17 6.34 -3.74 -0.02 1.15 16 22 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 23 H 0.09 1.69 7.69 -51.92 -0.40 1.29 16 24 H 0.09 1.67 7.94 -51.92 -0.41 1.26 16 25 H 0.10 1.28 7.00 -51.93 -0.36 0.91 16 26 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.08 0.82 7.84 -51.93 -0.41 0.41 16 28 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.08 0.68 7.77 -51.93 -0.40 0.28 16 32 H 0.08 0.86 7.84 -51.93 -0.41 0.46 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.09 1.04 5.93 -51.92 -0.31 0.73 16 LS Contribution 302.44 15.07 4.56 4.56 Total: -1.00 -34.38 302.44 -6.73 -41.12 By element: Atomic # 1 Polarization: 1.29 SS G_CDS: -4.36 Total: -3.07 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: -0.08 Total: -5.07 kcal Atomic # 7 Polarization: -34.67 SS G_CDS: 0.22 Total: -34.45 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: 0.08 Total: -11.61 kcal Atomic # 9 Polarization: -4.01 SS G_CDS: 0.07 Total: -3.94 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -34.38 -6.73 -41.12 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362109907.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.829 kcal (2) G-P(sol) polarization free energy of solvation -34.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds