Wall clock time and date at job start Wed Apr 15 2020 11:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86802 * 119.99942 * 2 1 4 4 H 1.48496 * 109.47016 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46898 * 299.99789 * 3 2 1 6 6 H 1.48500 * 109.47178 * 59.99700 * 3 2 1 7 7 C 1.38799 * 120.00277 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00209 * 180.02562 * 7 2 1 9 9 S 1.76204 * 119.99685 * 0.02562 * 7 2 1 10 10 C 1.81002 * 99.99932 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.46922 * 180.02562 * 10 9 7 12 12 O 1.21274 * 120.00423 * 359.97438 * 11 10 9 13 13 N 1.34783 * 119.99922 * 180.02562 * 11 10 9 14 14 C 1.46919 * 120.63144 * 179.97438 * 13 11 10 15 15 C 1.53195 * 108.89273 * 233.55709 * 14 13 11 16 16 C 1.53070 * 109.29524 * 305.57804 * 15 14 13 17 17 C 1.52996 * 109.44404 * 181.23493 * 16 15 14 18 18 F 1.39901 * 109.47397 * 179.79354 * 17 16 15 19 19 F 1.39898 * 109.47044 * 299.79896 * 17 16 15 20 20 C 1.53039 * 109.65812 * 61.15209 * 16 15 14 21 21 C 1.46928 * 120.62874 * 0.02562 * 13 11 10 22 22 H 0.96997 * 119.99912 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.47163 * 59.99853 * 10 9 7 24 24 H 1.08997 * 109.47104 * 300.00354 * 10 9 7 25 25 H 1.09002 * 109.58751 * 353.41659 * 14 13 11 26 26 H 1.08996 * 109.58750 * 113.69843 * 14 13 11 27 27 H 1.08997 * 109.50046 * 65.38734 * 15 14 13 28 28 H 1.09003 * 109.49733 * 185.48713 * 15 14 13 29 29 H 1.09007 * 109.35101 * 301.12962 * 16 15 14 30 30 H 1.09003 * 109.46825 * 59.79972 * 17 16 15 31 31 H 1.09002 * 109.49876 * 178.74890 * 20 16 15 32 32 H 1.09005 * 109.52615 * 58.67140 * 20 16 15 33 33 H 1.08998 * 109.58787 * 246.16207 * 21 13 11 34 34 H 1.09007 * 109.58600 * 6.44520 * 21 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0104 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9874 -5.3027 -0.0001 12 8 0.7912 -5.5023 0.0000 13 7 2.8442 -6.3431 0.0003 14 6 2.3441 -7.7246 0.0003 15 6 2.9845 -8.4840 1.1666 16 6 4.5076 -8.3637 1.0730 17 6 5.1516 -9.1466 2.2189 18 9 6.5439 -9.0410 2.1312 19 9 4.7202 -8.6225 3.4421 20 6 4.9146 -6.8916 1.1694 21 6 4.2960 -6.1173 0.0019 22 1 -0.4850 0.8400 -0.0004 23 1 3.1245 -3.7313 0.8905 24 1 3.1245 -3.7313 -0.8894 25 1 1.2605 -7.7210 0.1176 26 1 2.6082 -8.2088 -0.9399 27 1 2.6449 -8.0558 2.1097 28 1 2.6966 -9.5342 1.1187 29 1 4.8443 -8.7719 0.1200 30 1 4.8618 -10.1952 2.1503 31 1 6.0007 -6.8107 1.1248 32 1 4.5573 -6.4757 2.1115 33 1 4.7219 -6.4708 -0.9371 34 1 4.5001 -5.0528 0.1179 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362109907.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:16 Heat of formation + Delta-G solvation = -173.359830 kcal Electronic energy + Delta-G solvation = -19645.936112 eV Core-core repulsion = 16146.179092 eV Total energy + Delta-G solvation = -3499.757020 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.085 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.86484 -47.85948 -41.15261 -38.52085 -34.64134 -34.57613 -32.52256 -30.69429 -28.24106 -27.62772 -24.58603 -24.15438 -21.83345 -20.39393 -19.56157 -18.32716 -18.18432 -18.01620 -17.18645 -16.92862 -16.86049 -16.64017 -15.88254 -15.35896 -15.04015 -14.74209 -14.53301 -14.37356 -14.30769 -14.16499 -13.93846 -13.45935 -13.36116 -13.16959 -13.01143 -12.91836 -12.60319 -12.25838 -11.93152 -11.73753 -11.65536 -11.42929 -11.16700 -10.87186 -10.27721 -9.72315 -8.68837 -8.35721 -6.14347 1.24849 1.41070 1.45290 1.54642 1.57160 2.09521 2.26342 2.90746 2.98629 3.22796 3.38960 3.45012 3.50070 3.70078 3.95558 4.05767 4.21611 4.23782 4.30120 4.33518 4.41930 4.47961 4.63218 4.76312 4.79757 4.82577 4.96759 5.05357 5.29776 5.40944 5.56520 6.18889 6.25077 7.05625 7.12161 8.73881 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.029403 B = 0.003762 C = 0.003503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.070476 B = 7441.486375 C = 7991.765755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.014 3.986 3 Si 0.999 3.001 4 H -0.257 1.257 5 H -0.273 1.273 6 H -0.274 1.274 7 C -0.546 4.546 8 H 0.082 0.918 9 S -0.153 6.153 10 C -0.124 4.124 11 C 0.532 3.468 12 O -0.566 6.566 13 N -0.609 5.609 14 C 0.109 3.891 15 C -0.122 4.122 16 C -0.132 4.132 17 C 0.259 3.741 18 F -0.217 7.217 19 F -0.224 7.224 20 C -0.133 4.133 21 C 0.105 3.895 22 H 0.271 0.729 23 H 0.103 0.897 24 H 0.108 0.892 25 H 0.071 0.929 26 H 0.097 0.903 27 H 0.053 0.947 28 H 0.115 0.885 29 H 0.132 0.868 30 H 0.149 0.851 31 H 0.097 0.903 32 H 0.053 0.947 33 H 0.101 0.899 34 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.669 -20.551 0.855 25.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.191 4.191 3 Si 0.821 3.179 4 H -0.180 1.180 5 H -0.198 1.198 6 H -0.200 1.200 7 C -0.693 4.693 8 H 0.100 0.900 9 S 0.074 5.926 10 C -0.276 4.276 11 C 0.320 3.680 12 O -0.445 6.445 13 N -0.343 5.343 14 C -0.012 4.012 15 C -0.160 4.160 16 C -0.151 4.151 17 C 0.206 3.794 18 F -0.198 7.198 19 F -0.205 7.205 20 C -0.171 4.171 21 C -0.017 4.017 22 H 0.080 0.920 23 H 0.121 0.879 24 H 0.127 0.873 25 H 0.090 0.910 26 H 0.115 0.885 27 H 0.072 0.928 28 H 0.133 0.867 29 H 0.150 0.850 30 H 0.166 0.834 31 H 0.116 0.884 32 H 0.072 0.928 33 H 0.119 0.881 34 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 12.791 -20.758 0.882 24.398 hybrid contribution 1.404 1.511 0.295 2.084 sum 14.195 -19.246 1.178 23.944 Atomic orbital electron populations 1.70190 1.07995 1.28577 1.48017 1.26129 0.95959 1.03307 0.93663 0.84899 0.78609 0.76276 0.78120 1.18015 1.19802 1.19952 1.23222 0.95306 0.91919 1.58894 0.89960 1.85575 1.10635 0.99329 1.97020 1.23375 1.03382 0.94606 1.06192 1.20110 0.86026 0.86714 0.75160 1.90669 1.17223 1.85783 1.50819 1.48154 1.07251 1.05767 1.73160 1.21703 0.99799 0.79929 0.99812 1.21887 0.93204 1.02623 0.98288 1.22315 0.96488 0.96338 0.99935 1.22408 0.74927 1.01228 0.80822 1.92957 1.32871 1.97692 1.96282 1.92956 1.89564 1.89586 1.48420 1.21921 1.02107 0.94508 0.98586 1.21946 0.77848 1.01941 0.99970 0.91964 0.87873 0.87349 0.90998 0.88532 0.92833 0.86656 0.84984 0.83356 0.88414 0.92773 0.88137 0.89510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.30 13.22 21.65 0.29 -56.02 16 2 C 0.01 0.81 5.49 84.86 0.47 1.28 16 3 Si 1.00 43.77 29.55 68.60 2.03 45.79 16 4 H -0.26 -10.48 7.11 99.48 0.71 -9.78 16 5 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 6 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 7 C -0.55 -31.42 9.50 67.95 0.65 -30.78 16 8 H 0.08 4.41 7.80 -2.91 -0.02 4.38 16 9 S -0.15 -8.62 20.57 -56.49 -1.16 -9.78 16 10 C -0.12 -5.07 4.50 71.24 0.32 -4.75 16 11 C 0.53 20.28 7.72 87.66 0.68 20.96 16 12 O -0.57 -26.73 15.27 -3.01 -0.05 -26.78 16 13 N -0.61 -15.88 2.98 -819.01 -2.44 -18.31 16 14 C 0.11 2.20 6.43 86.36 0.56 2.75 16 15 C -0.12 -1.71 5.24 30.68 0.16 -1.55 16 16 C -0.13 -1.50 2.32 -10.76 -0.03 -1.52 16 17 C 0.26 3.03 4.87 71.98 0.35 3.38 16 18 F -0.22 -3.35 16.79 44.97 0.76 -2.59 16 19 F -0.22 -4.28 16.35 44.97 0.74 -3.55 16 20 C -0.13 -2.12 5.12 30.65 0.16 -1.96 16 21 C 0.10 1.93 6.34 86.34 0.55 2.48 16 22 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 23 H 0.10 3.88 7.69 -2.39 -0.02 3.86 16 24 H 0.11 3.96 7.94 -2.40 -0.02 3.95 16 25 H 0.07 1.87 7.00 -2.39 -0.02 1.85 16 26 H 0.10 1.39 8.14 -2.39 -0.02 1.38 16 27 H 0.05 1.05 7.84 -2.39 -0.02 1.04 16 28 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.13 0.81 8.14 -2.38 -0.02 0.79 16 30 H 0.15 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.10 1.31 7.77 -2.39 -0.02 1.29 16 32 H 0.05 1.14 7.84 -2.38 -0.02 1.12 16 33 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.09 1.74 5.93 -2.38 -0.01 1.73 16 Total: -1.00 -78.84 302.44 5.12 -73.72 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: 1.11 Total: 7.23 kcal Atomic # 6 Polarization: -13.57 SS G_CDS: 3.85 Total: -9.71 kcal Atomic # 7 Polarization: -72.18 SS G_CDS: -2.15 Total: -74.33 kcal Atomic # 8 Polarization: -26.73 SS G_CDS: -0.05 Total: -26.78 kcal Atomic # 9 Polarization: -7.63 SS G_CDS: 1.49 Total: -6.14 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.79 kcal Atomic # 16 Polarization: -8.62 SS G_CDS: -1.16 Total: -9.78 kcal Total: -78.84 5.12 -73.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362109907.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.642 kcal (2) G-P(sol) polarization free energy of solvation -78.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds