Wall clock time and date at job start Wed Apr 15 2020 11:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31391 * 1 3 3 Si 1.86805 * 119.99895 * 2 1 4 4 H 1.48490 * 109.47120 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47165 * 300.00173 * 3 2 1 6 6 H 1.48497 * 109.47216 * 59.99951 * 3 2 1 7 7 C 1.38849 * 119.99875 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99767 * 179.97438 * 7 2 1 9 9 O 1.34824 * 120.00171 * 0.02562 * 7 2 1 10 10 C 1.34684 * 116.99960 * 179.97438 * 9 7 2 11 11 O 1.21471 * 119.99792 * 359.97438 * 10 9 7 12 12 C 1.47978 * 120.00011 * 179.97438 * 10 9 7 13 13 C 1.40062 * 120.89622 * 359.97438 * 12 10 9 14 14 C 1.37947 * 119.11632 * 180.02562 * 13 12 10 15 15 N 1.31923 * 120.99142 * 359.74796 * 14 13 12 16 16 C 1.32188 * 121.99156 * 0.52063 * 15 14 13 17 17 O 1.35680 * 119.61974 * 179.75174 * 16 15 14 18 18 C 1.42898 * 117.00310 * 359.72895 * 17 16 15 19 19 H 1.09001 * 110.45407 * 328.84870 * 18 17 16 20 20 C 1.54507 * 110.63168 * 206.16080 * 18 17 16 21 21 C 1.54477 * 104.06510 * 241.29717 * 20 18 17 22 22 O 1.44688 * 104.83958 * 23.98057 * 21 20 18 23 23 C 1.44428 * 105.13885 * 319.51776 * 22 21 20 24 24 C 1.38870 * 120.75975 * 359.48023 * 16 15 14 25 25 H 0.97003 * 120.00314 * 359.97438 * 1 2 3 26 26 H 1.07989 * 120.44054 * 0.04299 * 13 12 10 27 27 H 1.08004 * 119.50499 * 179.97438 * 14 13 12 28 28 H 1.09000 * 110.50930 * 359.94656 * 20 18 17 29 29 H 1.09006 * 110.50971 * 122.65193 * 20 18 17 30 30 H 1.08996 * 110.37125 * 142.80919 * 21 20 18 31 31 H 1.08999 * 110.37544 * 265.03608 * 21 20 18 32 32 H 1.09002 * 110.37130 * 281.60836 * 23 22 21 33 33 H 1.08999 * 110.37385 * 159.38239 * 23 22 21 34 34 H 1.08002 * 120.53395 * 180.23258 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3139 0.0000 0.0000 3 14 2.2479 1.6178 0.0000 4 1 3.7078 1.3465 -0.0006 5 1 1.8891 2.3965 -1.2125 6 1 1.8892 2.3965 1.2125 7 6 2.0081 -1.2025 0.0005 8 1 3.0881 -1.2025 0.0001 9 8 1.3340 -2.3701 0.0005 10 6 2.0676 -3.4996 0.0005 11 8 3.2806 -3.4360 0.0001 12 6 1.3958 -4.8182 0.0011 13 6 -0.0016 -4.9134 0.0022 14 6 -0.5894 -6.1613 0.0032 15 7 0.1443 -7.2577 -0.0017 16 6 1.4655 -7.2163 0.0023 17 8 2.1728 -8.3742 0.0019 18 6 1.4244 -9.5915 0.0031 19 1 0.4809 -9.4581 0.5324 20 6 2.2456 -10.7348 0.6402 21 6 2.3908 -11.7711 -0.4962 22 8 2.2366 -11.0078 -1.7157 23 6 1.1706 -10.0723 -1.4429 24 6 2.1380 -6.0013 0.0012 25 1 -0.4851 0.8400 0.0004 26 1 -0.6107 -4.0217 0.0019 27 1 -1.6664 -6.2421 0.0045 28 1 3.2246 -10.3727 0.9543 29 1 1.7081 -11.1666 1.4845 30 1 3.3760 -12.2361 -0.4620 31 1 1.6114 -12.5292 -0.4203 32 1 0.2028 -10.5688 -1.5133 33 1 1.2165 -9.2321 -2.1357 34 1 3.2176 -5.9717 0.0007 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000755026474.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:23 Heat of formation + Delta-G solvation = -117.833385 kcal Electronic energy + Delta-G solvation = -20828.105327 eV Core-core repulsion = 17306.399678 eV Total energy + Delta-G solvation = -3521.705648 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.72825 -39.58389 -38.77268 -37.18988 -35.34237 -32.48370 -32.16853 -31.93388 -30.11849 -28.85110 -26.08591 -24.34268 -23.46769 -22.82208 -21.69230 -20.30430 -18.45599 -17.89839 -17.24403 -16.73090 -16.26326 -15.66096 -15.57657 -15.15167 -15.13721 -14.69200 -14.54788 -14.41793 -13.92689 -13.51978 -13.17789 -12.66102 -12.55627 -12.31450 -11.81069 -11.75761 -11.60849 -11.38831 -11.17605 -11.03022 -10.64592 -10.49309 -10.00325 -9.99862 -9.69654 -9.56311 -9.18118 -8.74534 -8.35016 -6.60934 -4.22173 1.00475 1.37245 2.87218 3.03823 3.11862 3.19368 3.43409 3.70848 3.79917 4.16103 4.25436 4.34040 4.39362 4.56098 4.77282 4.83113 5.00991 5.06522 5.17997 5.27242 5.34348 5.38145 5.45219 5.48148 5.61948 5.70060 5.87362 5.96311 6.33577 6.46676 6.58704 6.77201 7.23470 7.32497 7.76421 7.92851 8.53578 8.87466 9.64821 10.56072 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.046693 B = 0.003259 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.511687 B = 8590.204572 C = 8942.951838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.043 3.957 3 Si 0.947 3.053 4 H -0.263 1.263 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.373 4.373 8 H 0.101 0.899 9 O -0.197 6.197 10 C 0.424 3.576 11 O -0.545 6.545 12 C -0.005 4.005 13 C -0.163 4.163 14 C 0.127 3.873 15 N -0.538 5.538 16 C 0.307 3.693 17 O -0.292 6.292 18 C 0.060 3.940 19 H 0.104 0.896 20 C -0.155 4.155 21 C 0.045 3.955 22 O -0.371 6.371 23 C 0.032 3.968 24 C -0.142 4.142 25 H 0.273 0.727 26 H 0.156 0.844 27 H 0.164 0.836 28 H 0.092 0.908 29 H 0.090 0.910 30 H 0.095 0.905 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.097 0.903 34 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.047 -17.787 0.967 17.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C -0.163 4.163 3 Si 0.771 3.229 4 H -0.187 1.187 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.448 4.448 8 H 0.119 0.881 9 O -0.103 6.103 10 C 0.272 3.728 11 O -0.443 6.443 12 C -0.014 4.014 13 C -0.183 4.183 14 C -0.027 4.027 15 N -0.263 5.263 16 C 0.128 3.872 17 O -0.200 6.200 18 C 0.003 3.997 19 H 0.122 0.878 20 C -0.192 4.192 21 C -0.032 4.032 22 O -0.290 6.290 23 C -0.045 4.045 24 C -0.163 4.163 25 H 0.083 0.917 26 H 0.173 0.827 27 H 0.181 0.819 28 H 0.111 0.889 29 H 0.109 0.891 30 H 0.113 0.887 31 H 0.081 0.919 32 H 0.091 0.909 33 H 0.115 0.885 34 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -1.924 -18.464 0.759 18.579 hybrid contribution 0.410 1.558 0.220 1.626 sum -1.514 -16.906 0.978 17.001 Atomic orbital electron populations 1.69965 1.06163 1.28189 1.44440 1.25447 0.95907 0.99110 0.95860 0.85540 0.79584 0.79454 0.78313 1.18694 1.19936 1.19939 1.21454 0.92764 0.79499 1.51133 0.88116 1.83853 1.39239 1.13221 1.73955 1.20473 0.85818 0.85103 0.81404 1.90647 1.14831 1.87568 1.51267 1.19535 0.93404 0.91680 0.96760 1.22466 0.94571 1.00137 1.01146 1.22315 0.99544 0.86426 0.94465 1.67041 1.05762 1.34338 1.19167 1.19478 0.87492 0.85962 0.94235 1.86349 1.34069 1.11704 1.87861 1.23668 0.96386 0.82642 0.97037 0.87765 1.23111 1.02545 0.94560 0.99026 1.23469 1.02416 0.93834 0.83463 1.89230 1.54960 1.50626 1.34190 1.23877 0.90981 0.93389 0.96229 1.21033 1.02252 0.88408 1.04618 0.91683 0.82674 0.81922 0.88945 0.89120 0.88696 0.91949 0.90875 0.88452 0.83177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.71 13.67 55.49 0.76 -22.96 16 2 C 0.04 1.15 5.50 -17.51 -0.10 1.05 16 3 Si 0.95 20.44 29.55 -169.99 -5.02 15.41 16 4 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 5 H -0.27 -5.72 7.11 56.52 0.40 -5.31 16 6 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 7 C -0.37 -10.69 9.65 30.96 0.30 -10.39 16 8 H 0.10 2.91 6.86 -52.49 -0.36 2.55 16 9 O -0.20 -5.48 9.09 -21.42 -0.19 -5.67 16 10 C 0.42 10.68 7.86 34.72 0.27 10.96 16 11 O -0.54 -14.85 15.69 -19.25 -0.30 -15.16 16 12 C 0.00 -0.10 5.91 -104.69 -0.62 -0.72 16 13 C -0.16 -2.82 9.70 -39.00 -0.38 -3.20 16 14 C 0.13 1.81 11.16 -17.62 -0.20 1.62 16 15 N -0.54 -8.07 8.66 -13.39 -0.12 -8.19 16 16 C 0.31 4.99 7.48 -17.16 -0.13 4.87 16 17 O -0.29 -4.36 9.76 -18.74 -0.18 -4.54 16 18 C 0.06 0.69 3.32 -25.16 -0.08 0.61 16 19 H 0.10 1.16 7.09 -51.93 -0.37 0.79 16 20 C -0.15 -1.37 6.90 -25.17 -0.17 -1.54 16 21 C 0.05 0.38 7.63 37.93 0.29 0.67 16 22 O -0.37 -4.57 11.67 -35.23 -0.41 -4.98 16 23 C 0.03 0.37 7.37 37.94 0.28 0.65 16 24 C -0.14 -2.61 9.62 -38.81 -0.37 -2.99 16 25 H 0.27 6.91 8.31 -40.82 -0.34 6.58 16 26 H 0.16 2.74 7.71 -52.49 -0.40 2.33 16 27 H 0.16 1.71 8.06 -52.48 -0.42 1.28 16 28 H 0.09 0.87 8.00 -51.93 -0.42 0.46 16 29 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.10 1.23 8.09 -51.93 -0.42 0.81 16 34 H 0.15 2.77 7.74 -52.49 -0.41 2.37 16 LS Contribution 305.93 15.07 4.61 4.61 Total: -1.00 -32.49 305.93 -5.39 -37.88 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: -3.62 Total: 2.00 kcal Atomic # 6 Polarization: 2.50 SS G_CDS: -0.91 Total: 1.59 kcal Atomic # 7 Polarization: -31.79 SS G_CDS: 0.64 Total: -31.14 kcal Atomic # 8 Polarization: -29.26 SS G_CDS: -1.09 Total: -30.35 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -32.49 -5.39 -37.88 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755026474.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.952 kcal (2) G-P(sol) polarization free energy of solvation -32.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds