Wall clock time and date at job start Wed Apr 15 2020 11:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31391 * 1 3 3 Si 1.86805 * 119.99895 * 2 1 4 4 H 1.48490 * 109.47120 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47165 * 300.00173 * 3 2 1 6 6 H 1.48497 * 109.47216 * 59.99951 * 3 2 1 7 7 C 1.38849 * 119.99875 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99767 * 179.97438 * 7 2 1 9 9 O 1.34824 * 120.00171 * 0.02562 * 7 2 1 10 10 C 1.34684 * 116.99960 * 179.97438 * 9 7 2 11 11 O 1.21471 * 119.99792 * 359.97438 * 10 9 7 12 12 C 1.47978 * 120.00011 * 179.97438 * 10 9 7 13 13 C 1.40062 * 120.89622 * 359.97438 * 12 10 9 14 14 C 1.37947 * 119.11632 * 180.02562 * 13 12 10 15 15 N 1.31923 * 120.99142 * 359.74796 * 14 13 12 16 16 C 1.32188 * 121.99156 * 0.52063 * 15 14 13 17 17 O 1.35680 * 119.61974 * 179.75174 * 16 15 14 18 18 C 1.42898 * 117.00310 * 359.72895 * 17 16 15 19 19 H 1.09001 * 110.45407 * 328.84870 * 18 17 16 20 20 C 1.54507 * 110.63168 * 206.16080 * 18 17 16 21 21 C 1.54477 * 104.06510 * 241.29717 * 20 18 17 22 22 O 1.44688 * 104.83958 * 23.98057 * 21 20 18 23 23 C 1.44428 * 105.13885 * 319.51776 * 22 21 20 24 24 C 1.38870 * 120.75975 * 359.48023 * 16 15 14 25 25 H 0.97003 * 120.00314 * 359.97438 * 1 2 3 26 26 H 1.07989 * 120.44054 * 0.04299 * 13 12 10 27 27 H 1.08004 * 119.50499 * 179.97438 * 14 13 12 28 28 H 1.09000 * 110.50930 * 359.94656 * 20 18 17 29 29 H 1.09006 * 110.50971 * 122.65193 * 20 18 17 30 30 H 1.08996 * 110.37125 * 142.80919 * 21 20 18 31 31 H 1.08999 * 110.37544 * 265.03608 * 21 20 18 32 32 H 1.09002 * 110.37130 * 281.60836 * 23 22 21 33 33 H 1.08999 * 110.37385 * 159.38239 * 23 22 21 34 34 H 1.08002 * 120.53395 * 180.23258 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3139 0.0000 0.0000 3 14 2.2479 1.6178 0.0000 4 1 3.7078 1.3465 -0.0006 5 1 1.8891 2.3965 -1.2125 6 1 1.8892 2.3965 1.2125 7 6 2.0081 -1.2025 0.0005 8 1 3.0881 -1.2025 0.0001 9 8 1.3340 -2.3701 0.0005 10 6 2.0676 -3.4996 0.0005 11 8 3.2806 -3.4360 0.0001 12 6 1.3958 -4.8182 0.0011 13 6 -0.0016 -4.9134 0.0022 14 6 -0.5894 -6.1613 0.0032 15 7 0.1443 -7.2577 -0.0017 16 6 1.4655 -7.2163 0.0023 17 8 2.1728 -8.3742 0.0019 18 6 1.4244 -9.5915 0.0031 19 1 0.4809 -9.4581 0.5324 20 6 2.2456 -10.7348 0.6402 21 6 2.3908 -11.7711 -0.4962 22 8 2.2366 -11.0078 -1.7157 23 6 1.1706 -10.0723 -1.4429 24 6 2.1380 -6.0013 0.0012 25 1 -0.4851 0.8400 0.0004 26 1 -0.6107 -4.0217 0.0019 27 1 -1.6664 -6.2421 0.0045 28 1 3.2246 -10.3727 0.9543 29 1 1.7081 -11.1666 1.4845 30 1 3.3760 -12.2361 -0.4620 31 1 1.6114 -12.5292 -0.4203 32 1 0.2028 -10.5688 -1.5133 33 1 1.2165 -9.2321 -2.1357 34 1 3.2176 -5.9717 0.0007 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000755026474.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:22 Heat of formation + Delta-G solvation = -141.188486 kcal Electronic energy + Delta-G solvation = -20829.118080 eV Core-core repulsion = 17306.399678 eV Total energy + Delta-G solvation = -3522.718401 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.02226 -41.09238 -40.20551 -38.35466 -37.40331 -34.45744 -33.73706 -32.87491 -31.29874 -29.72154 -28.04063 -25.95579 -24.63149 -23.91389 -22.85184 -21.66233 -20.06770 -19.85950 -18.60675 -17.74941 -17.49578 -17.12327 -16.85758 -16.77141 -16.36361 -16.25887 -16.01871 -16.01407 -15.27486 -14.60392 -14.53089 -14.18121 -13.70135 -13.55920 -13.26737 -13.21465 -12.96640 -12.52786 -12.49290 -12.23021 -12.06952 -11.99851 -11.95605 -11.45762 -11.09748 -10.81829 -10.77669 -10.76469 -9.63166 -8.64202 -6.40656 -0.51971 0.03811 1.32915 1.33336 1.50819 1.68587 1.69663 2.09150 2.56527 2.65283 2.94107 2.96342 3.16890 3.48583 3.74364 3.77468 3.88396 3.95837 4.05510 4.15808 4.28797 4.45528 4.51794 4.59954 4.66241 4.79548 4.81059 4.86845 4.99133 5.08226 5.15509 5.26962 5.71552 5.71618 6.14448 6.46753 6.62030 6.79854 7.57821 8.55674 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.046693 B = 0.003259 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.511687 B = 8590.204572 C = 8942.951838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.003 3.997 3 Si 1.020 2.980 4 H -0.266 1.266 5 H -0.257 1.257 6 H -0.257 1.257 7 C -0.422 4.422 8 H 0.084 0.916 9 O -0.218 6.218 10 C 0.426 3.574 11 O -0.574 6.574 12 C -0.029 4.029 13 C -0.164 4.164 14 C 0.154 3.846 15 N -0.521 5.521 16 C 0.317 3.683 17 O -0.303 6.303 18 C 0.049 3.951 19 H 0.114 0.886 20 C -0.150 4.150 21 C 0.041 3.959 22 O -0.401 6.401 23 C 0.033 3.967 24 C -0.153 4.153 25 H 0.284 0.716 26 H 0.150 0.850 27 H 0.215 0.785 28 H 0.083 0.917 29 H 0.120 0.880 30 H 0.106 0.894 31 H 0.088 0.912 32 H 0.099 0.901 33 H 0.077 0.923 34 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.504 -19.397 1.371 19.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.199 4.199 3 Si 0.838 3.162 4 H -0.190 1.190 5 H -0.181 1.181 6 H -0.181 1.181 7 C -0.497 4.497 8 H 0.102 0.898 9 O -0.125 6.125 10 C 0.275 3.725 11 O -0.473 6.473 12 C -0.038 4.038 13 C -0.185 4.185 14 C -0.001 4.001 15 N -0.245 5.245 16 C 0.138 3.862 17 O -0.210 6.210 18 C -0.007 4.007 19 H 0.132 0.868 20 C -0.187 4.187 21 C -0.035 4.035 22 O -0.320 6.320 23 C -0.044 4.044 24 C -0.174 4.174 25 H 0.094 0.906 26 H 0.168 0.832 27 H 0.231 0.769 28 H 0.101 0.899 29 H 0.138 0.862 30 H 0.124 0.876 31 H 0.106 0.894 32 H 0.117 0.883 33 H 0.096 0.904 34 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -3.383 -20.117 1.165 20.433 hybrid contribution 0.832 1.771 0.093 1.959 sum -2.551 -18.347 1.258 18.566 Atomic orbital electron populations 1.70021 1.07578 1.29899 1.44778 1.26588 0.96965 1.02180 0.94187 0.84542 0.77768 0.74384 0.79505 1.18980 1.18144 1.18081 1.21603 0.92475 0.80742 1.54864 0.89807 1.83870 1.39687 1.13758 1.75168 1.21427 0.85787 0.86277 0.79012 1.90598 1.16352 1.88290 1.52102 1.19324 0.94893 0.89498 1.00092 1.22513 0.92976 1.01598 1.01365 1.23028 1.01525 0.84558 0.91038 1.67252 1.04906 1.34232 1.18153 1.19389 0.87800 0.85867 0.93099 1.86354 1.35028 1.12324 1.87343 1.24071 0.97091 0.81729 0.97826 0.86788 1.23180 1.02045 0.93553 0.99952 1.23720 1.04121 0.93814 0.81812 1.89201 1.55445 1.51237 1.36150 1.23898 0.91990 0.93102 0.95389 1.20944 1.01844 0.88969 1.05647 0.90643 0.83211 0.76867 0.89875 0.86196 0.87603 0.89424 0.88348 0.90446 0.84295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -50.15 13.67 21.64 0.30 -49.86 16 2 C 0.00 0.18 5.50 84.91 0.47 0.64 16 3 Si 1.02 42.14 29.55 68.60 2.03 44.17 16 4 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 5 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 6 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 7 C -0.42 -25.35 9.65 67.97 0.66 -24.70 16 8 H 0.08 5.16 6.86 -2.91 -0.02 5.14 16 9 O -0.22 -12.78 9.09 12.13 0.11 -12.67 16 10 C 0.43 22.62 7.86 70.40 0.55 23.18 16 11 O -0.57 -33.18 15.69 19.93 0.31 -32.87 16 12 C -0.03 -1.22 5.91 -19.91 -0.12 -1.34 16 13 C -0.16 -5.58 9.70 22.64 0.22 -5.36 16 14 C 0.15 3.91 11.16 84.61 0.94 4.85 16 15 N -0.52 -14.15 8.66 -309.16 -2.68 -16.83 16 16 C 0.32 9.96 7.48 84.79 0.63 10.60 16 17 O -0.30 -8.70 9.76 -89.98 -0.88 -9.58 16 18 C 0.05 1.02 3.32 31.61 0.10 1.12 16 19 H 0.11 2.14 7.09 -2.39 -0.02 2.13 16 20 C -0.15 -2.24 6.90 31.61 0.22 -2.02 16 21 C 0.04 0.59 7.63 72.48 0.55 1.14 16 22 O -0.40 -9.18 11.67 -148.98 -1.74 -10.92 16 23 C 0.03 0.68 7.37 72.49 0.53 1.22 16 24 C -0.15 -5.73 9.62 22.77 0.22 -5.51 16 25 H 0.28 14.39 8.31 -92.71 -0.77 13.62 16 26 H 0.15 5.29 7.71 -2.92 -0.02 5.27 16 27 H 0.21 3.33 8.06 -2.91 -0.02 3.30 16 28 H 0.08 1.42 8.00 -2.39 -0.02 1.40 16 29 H 0.12 1.10 8.14 -2.38 -0.02 1.08 16 30 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.08 1.88 8.09 -2.39 -0.02 1.86 16 34 H 0.14 5.42 7.74 -2.91 -0.02 5.40 16 Total: -1.00 -74.15 305.93 3.57 -70.58 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: 1.13 Total: 14.15 kcal Atomic # 6 Polarization: -1.17 SS G_CDS: 4.99 Total: 3.82 kcal Atomic # 7 Polarization: -64.30 SS G_CDS: -2.38 Total: -66.69 kcal Atomic # 8 Polarization: -63.85 SS G_CDS: -2.19 Total: -66.04 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.17 kcal Total: -74.15 3.57 -70.58 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755026474.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.607 kcal (2) G-P(sol) polarization free energy of solvation -74.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds