Wall clock time and date at job start Wed Apr 15 2020 11:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.53003 * 109.47030 * 58.14488 * 3 2 1 5 5 N 1.46896 * 109.46767 * 185.88973 * 4 3 2 6 6 C 1.46894 * 111.00147 * 291.47880 * 5 4 3 7 7 C 1.50706 * 109.47003 * 75.06229 * 6 5 4 8 8 H 1.07996 * 119.99865 * 5.21457 * 7 6 5 9 9 C 1.37879 * 120.00005 * 185.21637 * 7 6 5 10 10 N 1.31516 * 119.99800 * 359.97438 * 9 7 6 11 11 Si 1.86792 * 119.99910 * 180.02562 * 9 7 6 12 12 H 1.48505 * 109.47209 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.47736 * 119.99704 * 11 9 7 14 14 H 1.48502 * 109.46954 * 239.99424 * 11 9 7 15 15 C 1.46908 * 110.99949 * 167.52998 * 5 4 3 16 16 C 1.50706 * 109.46760 * 299.52650 * 15 5 4 17 17 C 1.38164 * 120.42747 * 267.17418 * 16 15 5 18 18 N 1.31884 * 120.77546 * 180.29921 * 17 16 15 19 19 C 1.31905 * 121.75902 * 359.43376 * 18 17 16 20 20 C 1.38133 * 120.77835 * 0.56542 * 19 18 17 21 21 C 1.38778 * 120.42542 * 87.19758 * 16 15 5 22 22 Cl 1.73597 * 120.80613 * 359.95294 * 21 16 15 23 23 H 1.08996 * 109.47420 * 298.14156 * 3 2 1 24 24 H 1.09000 * 109.47046 * 178.14300 * 3 2 1 25 25 H 1.09002 * 109.47495 * 65.89046 * 4 3 2 26 26 H 1.09001 * 109.46780 * 305.88467 * 4 3 2 27 27 H 1.09008 * 109.47458 * 195.06189 * 6 5 4 28 28 H 1.09000 * 109.47099 * 315.06081 * 6 5 4 29 29 H 0.97004 * 119.99415 * 180.02562 * 10 9 7 30 30 H 1.08998 * 109.46959 * 179.52976 * 15 5 4 31 31 H 1.08994 * 109.46955 * 59.52603 * 15 5 4 32 32 H 1.08001 * 119.61108 * 0.02562 * 17 16 15 33 33 H 1.07996 * 119.61284 * 180.31467 * 19 18 17 34 34 H 1.07998 * 120.42732 * 179.74583 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1184 -0.7604 -1.2253 5 7 4.5805 -0.8818 -1.1523 6 6 5.2265 0.4263 -1.3237 7 6 5.0679 1.2342 -0.0614 8 1 4.6148 0.7883 0.8117 9 6 5.5011 2.5425 -0.0211 10 7 6.0533 3.0853 -1.0842 11 14 5.3051 3.5435 1.5437 12 1 4.6598 2.7081 2.5882 13 1 6.6406 3.9864 2.0187 14 1 4.4586 4.7322 1.2681 15 6 5.0786 -1.8483 -2.1402 16 6 4.4765 -3.2023 -1.8659 17 6 5.1401 -4.1145 -1.0680 18 7 4.6224 -5.3035 -0.8282 19 6 3.4556 -5.6658 -1.3254 20 6 2.7337 -4.8076 -2.1319 21 6 3.2487 -3.5492 -2.4118 22 17 2.3775 -2.4363 -3.4197 23 1 2.9716 -0.4838 0.9061 24 1 2.9709 1.0279 -0.0333 25 1 2.8435 -0.2185 -2.1302 26 1 2.6720 -1.7546 -1.2473 27 1 6.2868 0.2834 -1.5327 28 1 4.7604 0.9556 -2.1548 29 1 6.3584 4.0056 -1.0557 30 1 6.1644 -1.9125 -2.0702 31 1 4.7976 -1.5218 -3.1414 32 1 6.0961 -3.8524 -0.6393 33 1 3.0618 -6.6464 -1.1025 34 1 1.7808 -5.1116 -2.5392 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001137237552.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:31 Heat of formation + Delta-G solvation = 66.485379 kcal Electronic energy + Delta-G solvation = -19243.482500 eV Core-core repulsion = 16202.771429 eV Total energy + Delta-G solvation = -3040.711071 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.083 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.39315 -37.61810 -36.69063 -35.89287 -33.19348 -32.19560 -31.86918 -30.34914 -27.53140 -25.46487 -23.84347 -23.09078 -22.04552 -20.22276 -17.59284 -17.35321 -16.75519 -16.02344 -15.34316 -15.27011 -14.62290 -14.42788 -14.08965 -13.87071 -13.61997 -13.44405 -12.92437 -12.82811 -12.26627 -12.17662 -12.16094 -11.96234 -11.39756 -11.15014 -11.03165 -10.80494 -10.72697 -10.57198 -10.36136 -9.78055 -9.62291 -9.44102 -9.28657 -9.07269 -8.52608 -7.50652 -6.15829 -4.16569 0.97172 0.99102 1.91636 3.21391 3.24016 3.28921 3.34067 3.36124 3.63627 4.29470 4.35567 4.46721 4.64688 4.70779 4.89175 5.12371 5.19930 5.28110 5.47762 5.62962 5.65389 5.72400 5.84181 5.99563 6.07856 6.11826 6.48735 6.50872 6.76879 7.01667 7.18607 7.64815 7.84912 7.87711 7.96858 8.06081 8.33066 8.89379 9.46262 10.93974 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.018591 B = 0.005721 C = 0.005153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.757406 B = 4892.796942 C = 5431.907488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C 0.221 3.779 3 C -0.042 4.042 4 C 0.071 3.929 5 N -0.526 5.526 6 C 0.188 3.812 7 C -0.515 4.515 8 H 0.075 0.925 9 C 0.059 3.941 10 N -0.892 5.892 11 Si 0.890 3.110 12 H -0.269 1.269 13 H -0.283 1.283 14 H -0.285 1.285 15 C 0.091 3.909 16 C -0.108 4.108 17 C 0.132 3.868 18 N -0.482 5.482 19 C 0.102 3.898 20 C -0.168 4.168 21 C 0.005 3.995 22 Cl -0.048 7.048 23 H 0.109 0.891 24 H 0.149 0.851 25 H 0.036 0.964 26 H 0.061 0.939 27 H 0.030 0.970 28 H 0.003 0.997 29 H 0.262 0.738 30 H 0.091 0.909 31 H 0.045 0.955 32 H 0.168 0.832 33 H 0.161 0.839 34 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.590 -13.508 -3.344 14.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.152 5.152 2 C -0.096 4.096 3 C -0.082 4.082 4 C -0.058 4.058 5 N -0.251 5.251 6 C 0.064 3.936 7 C -0.553 4.553 8 H 0.093 0.907 9 C -0.144 4.144 10 N -0.530 5.530 11 Si 0.718 3.282 12 H -0.193 1.193 13 H -0.209 1.209 14 H -0.211 1.211 15 C -0.037 4.037 16 C -0.111 4.111 17 C -0.026 4.026 18 N -0.191 5.191 19 C -0.055 4.055 20 C -0.189 4.189 21 C -0.030 4.030 22 Cl -0.019 7.019 23 H 0.127 0.873 24 H 0.166 0.834 25 H 0.054 0.946 26 H 0.079 0.921 27 H 0.048 0.952 28 H 0.021 0.979 29 H 0.072 0.928 30 H 0.109 0.891 31 H 0.063 0.937 32 H 0.185 0.815 33 H 0.178 0.822 34 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -3.690 -13.984 -2.513 14.680 hybrid contribution -0.412 1.686 -0.675 1.862 sum -4.102 -12.298 -3.188 13.351 Atomic orbital electron populations 1.81092 1.13465 1.10796 1.09879 1.29925 0.95855 0.91750 0.92093 1.20122 0.79016 1.07835 1.01178 1.22091 0.89720 0.98453 0.95585 1.62236 1.03707 1.12084 1.47043 1.19878 0.94277 0.82365 0.97125 1.21319 1.39873 0.95819 0.98272 0.90678 1.24991 0.95187 0.97897 0.96276 1.69957 1.40297 1.14269 1.28518 0.86554 0.78001 0.80237 0.83421 1.19311 1.20929 1.21073 1.21026 1.00014 0.87494 0.95197 1.20979 0.93649 0.98836 0.97639 1.22783 0.99651 0.87444 0.92727 1.67707 1.12087 1.18046 1.21244 1.22717 0.90291 0.99415 0.93050 1.22057 1.02286 0.93101 1.01424 1.21319 0.93721 0.91895 0.96074 1.98406 1.75207 1.61387 1.66891 0.87337 0.83379 0.94555 0.92101 0.95170 0.97892 0.92793 0.89097 0.93682 0.81466 0.82217 0.84098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -9.11 18.54 42.15 0.78 -8.33 16 2 C 0.22 3.90 15.43 -20.76 -0.32 3.58 16 3 C -0.04 -0.71 4.33 -29.51 -0.13 -0.84 16 4 C 0.07 1.21 3.33 -3.82 -0.01 1.20 16 5 N -0.53 -9.42 4.55 -237.51 -1.08 -10.50 16 6 C 0.19 4.15 4.74 -4.98 -0.02 4.12 16 7 C -0.51 -12.23 6.63 -34.44 -0.23 -12.45 16 8 H 0.08 1.71 5.91 -52.49 -0.31 1.40 16 9 C 0.06 1.49 5.46 -17.82 -0.10 1.40 16 10 N -0.89 -24.13 13.29 55.43 0.74 -23.39 16 11 Si 0.89 19.71 29.54 -169.99 -5.02 14.69 16 12 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 13 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 14 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 15 C 0.09 1.38 4.91 -4.97 -0.02 1.35 16 16 C -0.11 -1.46 4.85 -104.45 -0.51 -1.97 16 17 C 0.13 1.69 10.85 -17.56 -0.19 1.50 16 18 N -0.48 -6.17 10.36 -13.27 -0.14 -6.31 16 19 C 0.10 1.10 11.18 -17.56 -0.20 0.90 16 20 C -0.17 -1.84 9.94 -39.40 -0.39 -2.23 16 21 C 0.01 0.07 5.05 -39.17 -0.20 -0.13 16 22 Cl -0.05 -0.64 24.22 -51.86 -1.26 -1.90 16 23 H 0.11 1.76 7.75 -51.93 -0.40 1.36 16 24 H 0.15 2.85 5.45 -51.93 -0.28 2.57 16 25 H 0.04 0.65 7.24 -51.93 -0.38 0.27 16 26 H 0.06 0.97 4.37 -51.93 -0.23 0.75 16 27 H 0.03 0.71 7.83 -51.92 -0.41 0.30 16 28 H 0.00 0.08 7.85 -51.93 -0.41 -0.33 16 29 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 30 H 0.09 1.29 7.90 -51.93 -0.41 0.88 16 31 H 0.05 0.69 7.14 -51.93 -0.37 0.32 16 32 H 0.17 1.89 8.06 -52.49 -0.42 1.47 16 33 H 0.16 1.20 8.06 -52.49 -0.42 0.77 16 34 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 LS Contribution 302.45 15.07 4.56 4.56 Total: -1.00 -27.71 302.45 -7.33 -35.04 By element: Atomic # 1 Polarization: 3.31 SS G_CDS: -3.60 Total: -0.28 kcal Atomic # 6 Polarization: -1.26 SS G_CDS: -2.32 Total: -3.58 kcal Atomic # 7 Polarization: -48.83 SS G_CDS: 0.30 Total: -48.53 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.02 Total: 14.69 kcal Atomic # 17 Polarization: -0.64 SS G_CDS: -1.26 Total: -1.90 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -27.71 -7.33 -35.04 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137237552.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.526 kcal (2) G-P(sol) polarization free energy of solvation -27.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds