Wall clock time and date at job start Wed Apr 15 2020 11:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.53003 * 109.47030 * 58.14488 * 3 2 1 5 5 N 1.46896 * 109.46767 * 185.88973 * 4 3 2 6 6 C 1.46894 * 111.00147 * 291.47880 * 5 4 3 7 7 C 1.50706 * 109.47003 * 75.06229 * 6 5 4 8 8 H 1.07996 * 119.99865 * 5.21457 * 7 6 5 9 9 C 1.37879 * 120.00005 * 185.21637 * 7 6 5 10 10 N 1.31516 * 119.99800 * 359.97438 * 9 7 6 11 11 Si 1.86792 * 119.99910 * 180.02562 * 9 7 6 12 12 H 1.48505 * 109.47209 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.47736 * 119.99704 * 11 9 7 14 14 H 1.48502 * 109.46954 * 239.99424 * 11 9 7 15 15 C 1.46908 * 110.99949 * 167.52998 * 5 4 3 16 16 C 1.50706 * 109.46760 * 299.52650 * 15 5 4 17 17 C 1.38164 * 120.42747 * 267.17418 * 16 15 5 18 18 N 1.31884 * 120.77546 * 180.29921 * 17 16 15 19 19 C 1.31905 * 121.75902 * 359.43376 * 18 17 16 20 20 C 1.38133 * 120.77835 * 0.56542 * 19 18 17 21 21 C 1.38778 * 120.42542 * 87.19758 * 16 15 5 22 22 Cl 1.73597 * 120.80613 * 359.95294 * 21 16 15 23 23 H 1.08996 * 109.47420 * 298.14156 * 3 2 1 24 24 H 1.09000 * 109.47046 * 178.14300 * 3 2 1 25 25 H 1.09002 * 109.47495 * 65.89046 * 4 3 2 26 26 H 1.09001 * 109.46780 * 305.88467 * 4 3 2 27 27 H 1.09008 * 109.47458 * 195.06189 * 6 5 4 28 28 H 1.09000 * 109.47099 * 315.06081 * 6 5 4 29 29 H 0.97004 * 119.99415 * 180.02562 * 10 9 7 30 30 H 1.08998 * 109.46959 * 179.52976 * 15 5 4 31 31 H 1.08994 * 109.46955 * 59.52603 * 15 5 4 32 32 H 1.08001 * 119.61108 * 0.02562 * 17 16 15 33 33 H 1.07996 * 119.61284 * 180.31467 * 19 18 17 34 34 H 1.07998 * 120.42732 * 179.74583 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1184 -0.7604 -1.2253 5 7 4.5805 -0.8818 -1.1523 6 6 5.2265 0.4263 -1.3237 7 6 5.0679 1.2342 -0.0614 8 1 4.6148 0.7883 0.8117 9 6 5.5011 2.5425 -0.0211 10 7 6.0533 3.0853 -1.0842 11 14 5.3051 3.5435 1.5437 12 1 4.6598 2.7081 2.5882 13 1 6.6406 3.9864 2.0187 14 1 4.4586 4.7322 1.2681 15 6 5.0786 -1.8483 -2.1402 16 6 4.4765 -3.2023 -1.8659 17 6 5.1401 -4.1145 -1.0680 18 7 4.6224 -5.3035 -0.8282 19 6 3.4556 -5.6658 -1.3254 20 6 2.7337 -4.8076 -2.1319 21 6 3.2487 -3.5492 -2.4118 22 17 2.3775 -2.4363 -3.4197 23 1 2.9716 -0.4838 0.9061 24 1 2.9709 1.0279 -0.0333 25 1 2.8435 -0.2185 -2.1302 26 1 2.6720 -1.7546 -1.2473 27 1 6.2868 0.2834 -1.5327 28 1 4.7604 0.9556 -2.1548 29 1 6.3584 4.0056 -1.0557 30 1 6.1644 -1.9125 -2.0702 31 1 4.7976 -1.5218 -3.1414 32 1 6.0961 -3.8524 -0.6393 33 1 3.0618 -6.6464 -1.1025 34 1 1.7808 -5.1116 -2.5392 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001137237552.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:31 Heat of formation + Delta-G solvation = 50.150010 kcal Electronic energy + Delta-G solvation = -19244.190855 eV Core-core repulsion = 16202.771429 eV Total energy + Delta-G solvation = -3041.419426 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.083 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.37443 -39.00557 -37.75646 -37.35106 -34.82188 -33.58673 -32.84046 -31.71978 -29.19388 -26.74645 -25.10847 -24.38160 -23.29828 -21.64601 -19.16696 -18.31169 -17.79865 -17.60760 -16.83859 -16.52407 -16.14662 -15.73915 -15.48181 -14.84022 -14.82056 -14.67006 -14.29624 -14.10680 -13.90162 -13.56564 -13.43067 -13.35275 -12.93077 -12.75182 -12.43450 -12.32977 -12.25062 -11.94775 -11.87088 -11.31278 -11.11109 -10.56735 -10.46944 -10.42557 -10.06465 -9.02498 -8.08981 -6.13683 -0.00240 0.07864 0.92137 1.48612 1.53683 1.62438 1.76988 1.83549 2.47841 2.68698 3.02174 3.26409 3.44894 3.63017 3.72227 3.80836 3.93194 4.22218 4.32538 4.38554 4.50265 4.66155 4.76313 4.78688 4.86301 5.01813 5.09122 5.24091 5.35162 5.39201 5.60470 5.79963 6.15225 6.30825 6.57216 6.63412 6.93728 7.00720 7.52816 9.01381 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.018591 B = 0.005721 C = 0.005153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.757406 B = 4892.796942 C = 5431.907488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C 0.238 3.762 3 C -0.033 4.033 4 C 0.077 3.923 5 N -0.523 5.523 6 C 0.202 3.798 7 C -0.508 4.508 8 H 0.088 0.912 9 C 0.009 3.991 10 N -0.933 5.933 11 Si 0.947 3.053 12 H -0.253 1.253 13 H -0.287 1.287 14 H -0.290 1.290 15 C 0.093 3.907 16 C -0.121 4.121 17 C 0.129 3.871 18 N -0.498 5.498 19 C 0.109 3.891 20 C -0.163 4.163 21 C -0.005 4.005 22 Cl -0.058 7.058 23 H 0.124 0.876 24 H 0.130 0.870 25 H 0.025 0.975 26 H 0.076 0.924 27 H 0.012 0.988 28 H -0.026 1.026 29 H 0.260 0.740 30 H 0.096 0.904 31 H 0.040 0.960 32 H 0.176 0.824 33 H 0.196 0.804 34 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.444 -15.435 -2.266 15.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.175 5.175 2 C -0.078 4.078 3 C -0.073 4.073 4 C -0.053 4.053 5 N -0.247 5.247 6 C 0.076 3.924 7 C -0.546 4.546 8 H 0.106 0.894 9 C -0.190 4.190 10 N -0.574 5.574 11 Si 0.773 3.227 12 H -0.176 1.176 13 H -0.214 1.214 14 H -0.217 1.217 15 C -0.035 4.035 16 C -0.124 4.124 17 C -0.028 4.028 18 N -0.207 5.207 19 C -0.048 4.048 20 C -0.183 4.183 21 C -0.040 4.040 22 Cl -0.029 7.029 23 H 0.142 0.858 24 H 0.147 0.853 25 H 0.043 0.957 26 H 0.095 0.905 27 H 0.030 0.970 28 H -0.008 1.008 29 H 0.069 0.931 30 H 0.114 0.886 31 H 0.058 0.942 32 H 0.194 0.806 33 H 0.213 0.787 34 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -4.552 -15.937 -1.424 16.635 hybrid contribution -0.176 2.147 -1.056 2.399 sum -4.727 -13.790 -2.480 14.787 Atomic orbital electron populations 1.81113 1.14089 1.11508 1.10758 1.29846 0.95627 0.91017 0.91294 1.19999 0.78644 1.06742 1.01929 1.22064 0.89125 0.99085 0.95014 1.62137 1.04059 1.10314 1.48230 1.19547 0.93222 0.84063 0.95537 1.21686 1.38181 0.95737 0.98991 0.89450 1.25713 0.95379 0.99255 0.98634 1.70080 1.42273 1.14479 1.30542 0.85655 0.77529 0.78793 0.80687 1.17647 1.21362 1.21655 1.20997 1.00498 0.87828 0.94151 1.20764 0.94392 0.98050 0.99218 1.22918 1.00003 0.87463 0.92452 1.67778 1.13151 1.17854 1.21899 1.23343 0.89276 1.00562 0.91576 1.22368 1.03132 0.91993 1.00815 1.21507 0.93648 0.92671 0.96199 1.98407 1.75335 1.61930 1.67237 0.85783 0.85262 0.95696 0.90546 0.97015 1.00770 0.93110 0.88558 0.94233 0.80649 0.78685 0.81585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -18.37 18.54 20.01 0.37 -18.00 16 2 C 0.24 8.08 15.43 89.44 1.38 9.46 16 3 C -0.03 -1.09 4.33 28.79 0.12 -0.97 16 4 C 0.08 2.54 3.33 86.30 0.29 2.83 16 5 N -0.52 -18.52 4.55 -905.34 -4.11 -22.64 16 6 C 0.20 9.05 4.74 85.56 0.41 9.46 16 7 C -0.51 -24.03 6.63 25.60 0.17 -23.86 16 8 H 0.09 3.85 5.91 -2.91 -0.02 3.84 16 9 C 0.01 0.43 5.46 84.65 0.46 0.90 16 10 N -0.93 -51.58 13.29 21.45 0.28 -51.30 16 11 Si 0.95 40.30 29.54 68.60 2.03 42.32 16 12 H -0.25 -10.02 7.11 99.48 0.71 -9.31 16 13 H -0.29 -12.35 7.11 99.48 0.71 -11.64 16 14 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 15 C 0.09 2.79 4.91 85.56 0.42 3.21 16 16 C -0.12 -3.11 4.85 -19.75 -0.10 -3.20 16 17 C 0.13 3.07 10.85 84.67 0.92 3.99 16 18 N -0.50 -11.43 10.36 -195.90 -2.03 -13.46 16 19 C 0.11 1.96 11.18 84.66 0.95 2.91 16 20 C -0.16 -3.04 9.94 22.38 0.22 -2.82 16 21 C -0.01 -0.12 5.05 22.54 0.11 -0.01 16 22 Cl -0.06 -1.49 24.22 -2.72 -0.07 -1.56 16 23 H 0.12 3.73 7.75 -2.39 -0.02 3.71 16 24 H 0.13 4.88 5.45 -2.39 -0.01 4.87 16 25 H 0.02 0.89 7.24 -2.39 -0.02 0.87 16 26 H 0.08 2.33 4.37 -2.39 -0.01 2.32 16 27 H 0.01 0.57 7.83 -2.38 -0.02 0.55 16 28 H -0.03 -1.28 7.85 -2.39 -0.02 -1.30 16 29 H 0.26 13.81 8.31 -92.70 -0.77 13.04 16 30 H 0.10 2.73 7.90 -2.39 -0.02 2.71 16 31 H 0.04 1.23 7.14 -2.39 -0.02 1.21 16 32 H 0.18 3.73 8.06 -2.91 -0.02 3.70 16 33 H 0.20 2.02 8.06 -2.91 -0.02 1.99 16 34 H 0.17 2.23 8.06 -2.91 -0.02 2.21 16 Total: -1.00 -58.73 302.45 2.96 -55.78 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: 1.13 Total: 6.96 kcal Atomic # 6 Polarization: -3.46 SS G_CDS: 5.36 Total: 1.89 kcal Atomic # 7 Polarization: -99.90 SS G_CDS: -5.49 Total: -105.39 kcal Atomic # 14 Polarization: 40.30 SS G_CDS: 2.03 Total: 42.32 kcal Atomic # 17 Polarization: -1.49 SS G_CDS: -0.07 Total: -1.56 kcal Total: -58.73 2.96 -55.78 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137237552.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.925 kcal (2) G-P(sol) polarization free energy of solvation -58.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds