Wall clock time and date at job start Wed Apr 15 2020 11:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13591 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47161 * 257.53273 * 3 2 1 5 5 N 1.46897 * 109.47253 * 179.74625 * 4 3 2 6 6 C 1.46904 * 110.99908 * 61.17361 * 5 4 3 7 7 C 1.50707 * 109.46923 * 66.04918 * 6 5 4 8 8 H 1.07999 * 119.99637 * 359.97438 * 7 6 5 9 9 C 1.37875 * 120.00008 * 179.97438 * 7 6 5 10 10 N 1.31515 * 119.99874 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 119.99915 * 180.02562 * 9 7 6 12 12 H 1.48495 * 109.47594 * 59.99808 * 11 9 7 13 13 H 1.48503 * 109.46952 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.46744 * 299.99607 * 11 9 7 15 15 C 1.46904 * 111.00101 * 297.22663 * 5 4 3 16 16 C 1.50706 * 109.46436 * 288.26490 * 15 5 4 17 17 C 1.38164 * 119.61029 * 95.42970 * 16 15 5 18 18 C 1.38784 * 119.14530 * 179.75124 * 17 16 15 19 19 Cl 1.73598 * 120.80672 * 180.28354 * 18 17 16 20 20 C 1.38822 * 118.38811 * 0.50305 * 18 17 16 21 21 C 1.38124 * 119.14847 * 359.76097 * 20 18 17 22 22 N 1.31881 * 119.61008 * 275.69688 * 16 15 5 23 23 H 1.09006 * 109.46736 * 137.53277 * 3 2 1 24 24 H 1.08995 * 109.47469 * 17.53539 * 3 2 1 25 25 H 1.08993 * 109.47099 * 59.74270 * 4 3 2 26 26 H 1.09003 * 109.46890 * 299.74592 * 4 3 2 27 27 H 1.09006 * 109.47148 * 186.04535 * 6 5 4 28 28 H 1.08994 * 109.47738 * 306.04856 * 6 5 4 29 29 H 0.97003 * 119.99843 * 179.97438 * 10 9 7 30 30 H 1.09003 * 109.46967 * 48.26148 * 15 5 4 31 31 H 1.08998 * 109.47257 * 168.26435 * 15 5 4 32 32 H 1.08007 * 120.42852 * 0.02562 * 17 16 15 33 33 H 1.07996 * 120.42431 * 179.77366 * 20 18 17 34 34 H 1.07994 * 119.61402 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1178 0.3123 1.4085 5 7 4.5868 0.3070 1.4098 6 6 5.1178 1.3342 0.5037 7 6 4.7638 2.7008 1.0312 8 1 4.2003 2.7966 1.9475 9 6 5.1592 3.8287 0.3438 10 7 5.8458 3.7120 -0.7718 11 14 4.7210 5.5226 0.9980 12 1 5.3121 5.7000 2.3486 13 1 5.2576 6.5610 0.0820 14 1 3.2442 5.6536 1.0829 15 6 5.1088 -1.0217 1.0629 16 6 4.8685 -1.9705 2.2088 17 6 3.7481 -2.7790 2.2022 18 6 3.5391 -3.6530 3.2598 19 17 2.1498 -4.6935 3.2920 20 6 4.4654 -3.6717 4.2936 21 6 5.5585 -2.8296 4.2327 22 7 5.7274 -2.0156 3.2085 23 1 2.9709 0.7589 -0.6939 24 1 2.9718 -0.9790 -0.3096 25 1 2.7511 -0.4433 2.1031 26 1 2.7578 1.2940 1.7163 27 1 6.2019 1.2384 0.4414 28 1 4.6839 1.2037 -0.4876 29 1 6.1237 4.5055 -1.2555 30 1 4.5997 -1.3909 0.1725 31 1 6.1788 -0.9519 0.8671 32 1 3.0464 -2.7347 1.3824 33 1 4.3331 -4.3363 5.1345 34 1 6.2836 -2.8376 5.0330 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001139565869.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:34 Heat of formation + Delta-G solvation = 60.746431 kcal Electronic energy + Delta-G solvation = -18847.103550 eV Core-core repulsion = 15806.143619 eV Total energy + Delta-G solvation = -3040.959931 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.083 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.36808 -37.84252 -36.85391 -35.97807 -32.89417 -32.27964 -31.84080 -30.29853 -27.60977 -25.61656 -23.87496 -23.58516 -22.01369 -19.94141 -17.61951 -17.01683 -16.67080 -16.30135 -15.66969 -15.43088 -14.61477 -14.49959 -14.12121 -13.91492 -13.68645 -13.56655 -13.20609 -12.53036 -12.31072 -12.18738 -12.07785 -11.97154 -11.62789 -11.31716 -11.19162 -11.10399 -10.79286 -10.65256 -10.31022 -9.98598 -9.54255 -9.50424 -9.32999 -9.10988 -8.50118 -7.48057 -6.10217 -4.11675 0.97103 1.00179 1.78964 3.03835 3.06917 3.31415 3.35920 3.38967 3.63385 4.24271 4.28140 4.40284 4.58272 4.75935 4.91847 4.99922 5.24774 5.27236 5.33322 5.42209 5.53318 5.61840 5.65757 5.82493 5.88543 6.07139 6.18299 6.49941 6.51983 7.08793 7.13423 7.66668 7.80914 7.91416 8.01089 8.01636 8.37128 8.94791 9.53350 11.00121 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.018846 B = 0.004805 C = 0.004140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.333271 B = 5826.270517 C = 6760.896479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C 0.223 3.777 3 C -0.076 4.076 4 C 0.068 3.932 5 N -0.516 5.516 6 C 0.189 3.811 7 C -0.511 4.511 8 H 0.063 0.937 9 C 0.060 3.940 10 N -0.896 5.896 11 Si 0.895 3.105 12 H -0.276 1.276 13 H -0.288 1.288 14 H -0.277 1.277 15 C 0.090 3.910 16 C 0.171 3.829 17 C -0.164 4.164 18 C 0.008 3.992 19 Cl -0.062 7.062 20 C -0.178 4.178 21 C 0.117 3.883 22 N -0.458 5.458 23 H 0.126 0.874 24 H 0.099 0.901 25 H 0.061 0.939 26 H 0.095 0.905 27 H 0.037 0.963 28 H 0.003 0.997 29 H 0.263 0.737 30 H 0.052 0.948 31 H 0.096 0.904 32 H 0.141 0.859 33 H 0.141 0.859 34 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.488 -15.568 5.951 16.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.136 5.136 2 C -0.095 4.095 3 C -0.117 4.117 4 C -0.063 4.063 5 N -0.239 5.239 6 C 0.064 3.936 7 C -0.549 4.549 8 H 0.082 0.918 9 C -0.142 4.142 10 N -0.536 5.536 11 Si 0.723 3.277 12 H -0.201 1.201 13 H -0.214 1.214 14 H -0.203 1.203 15 C -0.039 4.039 16 C 0.032 3.968 17 C -0.186 4.186 18 C -0.026 4.026 19 Cl -0.033 7.033 20 C -0.199 4.199 21 C -0.041 4.041 22 N -0.167 5.167 23 H 0.143 0.857 24 H 0.117 0.883 25 H 0.079 0.921 26 H 0.113 0.887 27 H 0.055 0.945 28 H 0.021 0.979 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.114 0.886 32 H 0.159 0.841 33 H 0.159 0.841 34 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -2.301 -14.868 6.255 16.294 hybrid contribution -0.927 0.092 -0.440 1.030 sum -3.228 -14.776 5.815 16.204 Atomic orbital electron populations 1.81147 1.13154 1.09740 1.09530 1.29234 0.95239 0.92448 0.92565 1.20258 0.81667 1.05207 1.04616 1.22131 0.89176 1.03318 0.91629 1.62341 1.04795 1.02303 1.54421 1.19905 0.95904 0.88475 0.89270 1.21062 1.35239 0.89751 1.08850 0.91838 1.24926 0.95118 0.99254 0.94909 1.69924 1.37873 1.29742 1.16017 0.86601 0.78720 0.83531 0.78845 1.20120 1.21368 1.20299 1.21116 1.02582 0.89237 0.90934 1.21416 0.88562 0.92663 0.94184 1.21993 0.99914 0.97305 0.99347 1.21273 0.90295 0.94462 0.96589 1.98390 1.41002 1.65518 1.98370 1.22057 0.95710 1.02831 0.99290 1.22853 0.95165 0.90139 0.95929 1.67588 1.29851 1.18643 1.00654 0.85652 0.88349 0.92070 0.88663 0.94493 0.97929 0.92763 0.92997 0.88555 0.84113 0.84129 0.81967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -8.11 18.54 42.15 0.78 -7.33 16 2 C 0.22 3.46 15.43 -20.76 -0.32 3.14 16 3 C -0.08 -1.06 5.06 -29.52 -0.15 -1.21 16 4 C 0.07 1.09 4.91 -3.83 -0.02 1.07 16 5 N -0.52 -9.34 4.65 -237.51 -1.10 -10.44 16 6 C 0.19 4.18 4.49 -4.97 -0.02 4.16 16 7 C -0.51 -12.95 8.50 -34.44 -0.29 -13.24 16 8 H 0.06 1.62 7.11 -52.49 -0.37 1.25 16 9 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 10 N -0.90 -24.70 13.29 55.43 0.74 -23.97 16 11 Si 0.90 20.72 29.54 -169.99 -5.02 15.69 16 12 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 13 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 14 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 15 C 0.09 1.33 5.16 -4.97 -0.03 1.31 16 16 C 0.17 2.39 5.81 -82.60 -0.48 1.91 16 17 C -0.16 -2.00 8.26 -39.41 -0.33 -2.33 16 18 C 0.01 0.10 6.37 -39.16 -0.25 -0.15 16 19 Cl -0.06 -0.65 29.02 -51.86 -1.50 -2.15 16 20 C -0.18 -1.82 9.94 -39.41 -0.39 -2.21 16 21 C 0.12 1.32 11.18 -17.56 -0.20 1.12 16 22 N -0.46 -6.68 10.27 -9.49 -0.10 -6.78 16 23 H 0.13 1.96 6.31 -51.93 -0.33 1.63 16 24 H 0.10 1.10 6.22 -51.93 -0.32 0.78 16 25 H 0.06 0.91 6.46 -51.93 -0.34 0.57 16 26 H 0.10 1.74 6.83 -51.93 -0.35 1.39 16 27 H 0.04 0.90 7.86 -51.93 -0.41 0.49 16 28 H 0.00 0.07 6.04 -51.93 -0.31 -0.25 16 29 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 30 H 0.05 0.64 5.77 -51.93 -0.30 0.35 16 31 H 0.10 1.50 7.81 -51.93 -0.41 1.10 16 32 H 0.14 1.52 8.06 -52.48 -0.42 1.10 16 33 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 34 H 0.16 1.34 8.06 -52.49 -0.42 0.92 16 LS Contribution 310.10 15.07 4.67 4.67 Total: -1.00 -29.20 310.10 -7.65 -36.85 By element: Atomic # 1 Polarization: 1.95 SS G_CDS: -3.54 Total: -1.60 kcal Atomic # 6 Polarization: -2.38 SS G_CDS: -2.57 Total: -4.95 kcal Atomic # 7 Polarization: -48.84 SS G_CDS: 0.32 Total: -48.52 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -1.50 Total: -2.15 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -29.20 -7.65 -36.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139565869.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.599 kcal (2) G-P(sol) polarization free energy of solvation -29.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds