Wall clock time and date at job start Wed Apr 15 2020 11:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99787 * 2 1 4 4 H 1.48504 * 109.47052 * 269.99279 * 3 2 1 5 5 H 1.48495 * 109.47307 * 29.99218 * 3 2 1 6 6 H 1.48500 * 109.47143 * 149.99726 * 3 2 1 7 7 C 1.37876 * 120.00362 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 S 1.81401 * 109.47149 * 179.97438 * 10 9 7 12 12 O 1.42093 * 110.54547 * 291.62539 * 11 10 9 13 13 O 1.42105 * 110.53941 * 68.37879 * 11 10 9 14 14 N 1.65595 * 104.44822 * 179.97438 * 11 10 9 15 15 C 1.47156 * 120.98764 * 269.72108 * 14 11 10 16 16 C 1.52873 * 108.60798 * 230.50464 * 15 14 11 17 17 O 1.42962 * 109.29756 * 307.92764 * 16 15 14 18 18 C 1.42968 * 114.16677 * 62.45378 * 17 16 15 19 19 H 1.08999 * 109.50954 * 57.34182 * 18 17 16 20 20 C 1.52990 * 109.51276 * 177.49719 * 18 17 16 21 21 O 1.42905 * 109.47375 * 294.74219 * 20 18 17 22 22 C 1.47156 * 120.98292 * 90.00379 * 14 11 10 23 23 H 0.96994 * 119.99814 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 25 25 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 26 26 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 27 27 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 28 28 H 1.09002 * 109.67692 * 350.28277 * 15 14 11 29 29 H 1.08998 * 109.68272 * 110.83212 * 15 14 11 30 30 H 1.09007 * 109.58151 * 187.91988 * 16 15 14 31 31 H 1.08998 * 109.41311 * 67.83808 * 16 15 14 32 32 H 1.09004 * 109.47808 * 54.74372 * 20 18 17 33 33 H 1.09008 * 109.47065 * 174.74662 * 20 18 17 34 34 H 0.96694 * 114.00376 * 180.02562 * 21 20 18 35 35 H 1.09010 * 109.68044 * 249.16788 * 22 14 11 36 36 H 1.09000 * 109.67738 * 9.67359 * 22 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4465 2.6528 0.6998 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0217 -2.6365 0.0023 11 16 5.8357 -2.6364 0.0022 12 8 6.3343 -2.1470 -1.2351 13 8 6.3343 -2.1450 1.2389 14 7 6.2489 -4.2399 0.0042 15 6 6.4440 -4.9705 1.2667 16 6 7.7861 -5.6998 1.2059 17 8 7.8483 -6.4757 0.0068 18 6 7.7857 -5.7029 -1.1944 19 1 8.5946 -4.9724 -1.1998 20 6 7.9230 -6.6281 -2.4051 21 8 9.2248 -7.2175 -2.4089 22 6 6.4380 -4.9751 -1.2564 23 1 -0.4849 0.8400 -0.0004 24 1 3.8746 -0.6799 0.8911 25 1 3.8752 -0.6803 -0.8888 26 1 3.6587 -3.1509 -0.8875 27 1 3.6580 -3.1497 0.8925 28 1 6.4464 -4.2683 2.1004 29 1 5.6410 -5.6956 1.3991 30 1 7.8844 -6.3568 2.0701 31 1 8.5956 -4.9698 1.2096 32 1 7.1689 -7.4133 -2.3499 33 1 7.7821 -6.0526 -3.3200 34 1 9.3829 -7.8173 -3.1508 35 1 5.6343 -5.7007 -1.3824 36 1 6.4357 -4.2761 -2.0928 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408433062.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:02 Heat of formation + Delta-G solvation = -163.564902 kcal Electronic energy + Delta-G solvation = -20608.907828 eV Core-core repulsion = 17220.663063 eV Total energy + Delta-G solvation = -3388.244764 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.102 amu Computer time = 2.19 seconds Orbital eigenvalues (eV) -39.63468 -36.96330 -36.80705 -35.70328 -34.84805 -33.99615 -32.25312 -31.52824 -28.21999 -26.07336 -25.58233 -23.17969 -21.36127 -21.08594 -18.79323 -17.90056 -17.68405 -17.03985 -16.91269 -16.05169 -15.72894 -15.35887 -15.05623 -14.85835 -14.45345 -14.26165 -13.98650 -13.70574 -13.14264 -12.84490 -12.64378 -12.07795 -12.04143 -11.94947 -11.82980 -11.47967 -11.32586 -11.29124 -11.26232 -10.74930 -10.48843 -10.40469 -10.27497 -10.16773 -9.75037 -9.45611 -8.84409 -8.70062 -6.20242 -4.21952 0.50219 2.71682 3.23496 3.31117 3.34875 3.47446 3.82347 4.08508 4.32302 4.38359 4.51888 4.66533 4.82981 4.88092 5.02323 5.09969 5.11860 5.22361 5.24010 5.28876 5.37401 5.46175 5.50850 5.62020 5.77286 5.91329 6.21941 6.36556 6.75964 6.88346 6.96228 7.34485 7.50332 8.32500 8.80573 9.39159 10.92092 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.034463 B = 0.004282 C = 0.004204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.279612 B = 6537.390198 C = 6659.262482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.072 3.928 3 Si 0.869 3.131 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.262 1.262 7 C -0.521 4.521 8 H 0.078 0.922 9 C -0.007 4.007 10 C -0.579 4.579 11 S 2.587 3.413 12 O -0.962 6.962 13 O -0.961 6.961 14 N -1.007 6.007 15 C 0.081 3.919 16 C 0.052 3.948 17 O -0.369 6.369 18 C 0.080 3.920 19 H 0.071 0.929 20 C 0.085 3.915 21 O -0.566 6.566 22 C 0.091 3.909 23 H 0.267 0.733 24 H 0.032 0.968 25 H 0.028 0.972 26 H 0.125 0.875 27 H 0.126 0.874 28 H 0.106 0.894 29 H 0.077 0.923 30 H 0.106 0.894 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.066 0.934 34 H 0.380 0.620 35 H 0.079 0.921 36 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.732 -14.119 -2.413 20.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.131 4.131 3 Si 0.696 3.304 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.186 1.186 7 C -0.560 4.560 8 H 0.096 0.904 9 C -0.047 4.047 10 C -0.712 4.712 11 S 2.686 3.314 12 O -0.952 6.952 13 O -0.951 6.951 14 N -0.844 5.844 15 C -0.045 4.045 16 C -0.026 4.026 17 O -0.287 6.287 18 C 0.021 3.979 19 H 0.089 0.911 20 C 0.006 3.994 21 O -0.371 6.371 22 C -0.035 4.035 23 H 0.077 0.923 24 H 0.051 0.949 25 H 0.046 0.954 26 H 0.144 0.856 27 H 0.144 0.856 28 H 0.124 0.876 29 H 0.096 0.904 30 H 0.124 0.876 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.227 0.773 35 H 0.097 0.903 36 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 15.292 -13.125 -1.858 20.237 hybrid contribution -0.496 0.475 -0.482 0.839 sum 14.795 -12.650 -2.340 19.606 Atomic orbital electron populations 1.69878 1.06211 1.27309 1.49861 1.24986 0.94825 0.99171 0.94084 0.86924 0.80688 0.83680 0.79151 1.19638 1.20688 1.18649 1.20836 0.87748 0.94939 1.52438 0.90404 1.19421 0.99976 0.87397 0.97864 1.30317 1.20798 1.09137 1.10982 1.05818 0.79290 0.72077 0.74198 1.93534 1.78970 1.77480 1.45255 1.93539 1.78954 1.77365 1.45253 1.57995 1.85495 1.29843 1.11058 1.22076 0.98786 0.97390 0.86226 1.22836 0.96147 0.95646 0.88008 1.87978 1.94379 1.33261 1.13084 1.22386 0.96867 0.93263 0.85401 0.91058 1.22108 0.85381 0.96033 0.95829 1.86530 1.32691 1.65191 1.52710 1.21968 0.97498 0.97264 0.86797 0.92327 0.94934 0.95377 0.85623 0.85553 0.87595 0.90448 0.87567 0.92573 0.92370 0.91566 0.77348 0.90270 0.87527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.84 13.96 55.43 0.77 -26.06 16 2 C 0.07 2.06 5.47 -17.82 -0.10 1.97 16 3 Si 0.87 21.29 27.47 -169.99 -4.67 16.62 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.26 -6.21 6.54 56.52 0.37 -5.84 16 7 C -0.52 -14.41 9.66 -34.44 -0.33 -14.74 16 8 H 0.08 2.26 7.99 -52.49 -0.42 1.84 16 9 C -0.01 -0.17 4.05 -27.89 -0.11 -0.28 16 10 C -0.58 -10.39 6.12 37.16 0.23 -10.16 16 11 S 2.59 43.32 5.47 -107.50 -0.59 42.73 16 12 O -0.96 -18.21 16.62 -57.54 -0.96 -19.17 16 13 O -0.96 -18.33 16.61 -57.54 -0.96 -19.29 16 14 N -1.01 -13.17 3.28 -113.29 -0.37 -13.54 16 15 C 0.08 0.90 6.64 -3.75 -0.02 0.88 16 16 C 0.05 0.55 6.97 37.09 0.26 0.81 16 17 O -0.37 -4.53 10.35 -39.70 -0.41 -4.94 16 18 C 0.08 0.91 3.06 -26.59 -0.08 0.83 16 19 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 20 C 0.08 0.74 6.71 37.15 0.25 0.99 16 21 O -0.57 -5.41 13.63 -39.70 -0.54 -5.95 16 22 C 0.09 1.02 5.96 -3.53 -0.02 1.00 16 23 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 24 H 0.03 0.76 7.20 -51.93 -0.37 0.39 16 25 H 0.03 0.65 7.57 -51.93 -0.39 0.25 16 26 H 0.13 2.04 8.14 -51.92 -0.42 1.62 16 27 H 0.13 2.07 8.14 -51.92 -0.42 1.64 16 28 H 0.11 1.18 6.87 -51.93 -0.36 0.82 16 29 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.11 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.44 8.14 -51.92 -0.42 0.02 16 34 H 0.38 1.68 9.12 45.56 0.42 2.09 16 35 H 0.08 0.73 8.14 -51.92 -0.42 0.31 16 36 H 0.11 1.17 6.88 -51.93 -0.36 0.82 16 LS Contribution 310.00 15.07 4.67 4.67 Total: -1.00 -36.10 310.00 -7.44 -43.54 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: -4.46 Total: 0.11 kcal Atomic # 6 Polarization: -18.77 SS G_CDS: 0.06 Total: -18.71 kcal Atomic # 7 Polarization: -40.01 SS G_CDS: 0.40 Total: -39.61 kcal Atomic # 8 Polarization: -46.49 SS G_CDS: -2.86 Total: -49.35 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.67 Total: 16.62 kcal Atomic # 16 Polarization: 43.32 SS G_CDS: -0.59 Total: 42.73 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -36.10 -7.44 -43.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408433062.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.024 kcal (2) G-P(sol) polarization free energy of solvation -36.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.19 seconds