Wall clock time and date at job start Wed Apr 15 2020 11:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99787 * 2 1 4 4 H 1.48504 * 109.47052 * 269.99279 * 3 2 1 5 5 H 1.48495 * 109.47307 * 29.99218 * 3 2 1 6 6 H 1.48500 * 109.47143 * 149.99726 * 3 2 1 7 7 C 1.37876 * 120.00362 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 S 1.81401 * 109.47149 * 179.97438 * 10 9 7 12 12 O 1.42093 * 110.54547 * 291.62539 * 11 10 9 13 13 O 1.42105 * 110.53941 * 68.37879 * 11 10 9 14 14 N 1.65595 * 104.44822 * 179.97438 * 11 10 9 15 15 C 1.47156 * 120.98764 * 269.72108 * 14 11 10 16 16 C 1.52873 * 108.60798 * 230.50464 * 15 14 11 17 17 O 1.42962 * 109.29756 * 307.92764 * 16 15 14 18 18 C 1.42968 * 114.16677 * 62.45378 * 17 16 15 19 19 H 1.08999 * 109.50954 * 57.34182 * 18 17 16 20 20 C 1.52990 * 109.51276 * 177.49719 * 18 17 16 21 21 O 1.42905 * 109.47375 * 294.74219 * 20 18 17 22 22 C 1.47156 * 120.98292 * 90.00379 * 14 11 10 23 23 H 0.96994 * 119.99814 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 25 25 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 26 26 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 27 27 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 28 28 H 1.09002 * 109.67692 * 350.28277 * 15 14 11 29 29 H 1.08998 * 109.68272 * 110.83212 * 15 14 11 30 30 H 1.09007 * 109.58151 * 187.91988 * 16 15 14 31 31 H 1.08998 * 109.41311 * 67.83808 * 16 15 14 32 32 H 1.09004 * 109.47808 * 54.74372 * 20 18 17 33 33 H 1.09008 * 109.47065 * 174.74662 * 20 18 17 34 34 H 0.96694 * 114.00376 * 180.02562 * 21 20 18 35 35 H 1.09010 * 109.68044 * 249.16788 * 22 14 11 36 36 H 1.09000 * 109.67738 * 9.67359 * 22 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4465 2.6528 0.6998 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0217 -2.6365 0.0023 11 16 5.8357 -2.6364 0.0022 12 8 6.3343 -2.1470 -1.2351 13 8 6.3343 -2.1450 1.2389 14 7 6.2489 -4.2399 0.0042 15 6 6.4440 -4.9705 1.2667 16 6 7.7861 -5.6998 1.2059 17 8 7.8483 -6.4757 0.0068 18 6 7.7857 -5.7029 -1.1944 19 1 8.5946 -4.9724 -1.1998 20 6 7.9230 -6.6281 -2.4051 21 8 9.2248 -7.2175 -2.4089 22 6 6.4380 -4.9751 -1.2564 23 1 -0.4849 0.8400 -0.0004 24 1 3.8746 -0.6799 0.8911 25 1 3.8752 -0.6803 -0.8888 26 1 3.6587 -3.1509 -0.8875 27 1 3.6580 -3.1497 0.8925 28 1 6.4464 -4.2683 2.1004 29 1 5.6410 -5.6956 1.3991 30 1 7.8844 -6.3568 2.0701 31 1 8.5956 -4.9698 1.2096 32 1 7.1689 -7.4133 -2.3499 33 1 7.7821 -6.0526 -3.3200 34 1 9.3829 -7.8173 -3.1508 35 1 5.6343 -5.7007 -1.3824 36 1 6.4357 -4.2761 -2.0928 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408433062.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:00 Heat of formation + Delta-G solvation = -194.775976 kcal Electronic energy + Delta-G solvation = -20610.261241 eV Core-core repulsion = 17220.663063 eV Total energy + Delta-G solvation = -3389.598178 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.102 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.49608 -38.33543 -37.54482 -37.12112 -35.92688 -35.80489 -33.49171 -33.06667 -29.09083 -27.89569 -26.49073 -24.05250 -23.07749 -22.07076 -20.02739 -19.41693 -18.70707 -18.38788 -17.77871 -17.21117 -17.13390 -16.43780 -16.17214 -16.02922 -15.98096 -15.24479 -15.17480 -14.84473 -14.77151 -13.91288 -13.82353 -13.66206 -13.32696 -13.29714 -13.09423 -13.02410 -12.98650 -12.55813 -12.26075 -12.08502 -11.98664 -11.75556 -11.58119 -11.34204 -11.19485 -10.91435 -10.85569 -9.86130 -8.37697 -6.43768 -0.84172 1.31330 1.33446 1.43187 1.54271 2.28511 2.68652 2.74492 2.96147 2.99719 3.27970 3.53382 3.86389 3.92417 4.00017 4.05997 4.13156 4.27955 4.33491 4.41457 4.54153 4.58678 4.60000 4.62670 4.81622 4.96291 5.01651 5.04304 5.09270 5.40646 5.45797 6.12734 6.15274 6.62452 6.94447 7.20851 8.77831 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.034463 B = 0.004282 C = 0.004204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.279612 B = 6537.390198 C = 6659.262482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.014 3.986 3 Si 0.925 3.075 4 H -0.260 1.260 5 H -0.274 1.274 6 H -0.250 1.250 7 C -0.528 4.528 8 H 0.050 0.950 9 C -0.018 4.018 10 C -0.584 4.584 11 S 2.615 3.385 12 O -0.984 6.984 13 O -0.985 6.985 14 N -1.002 6.002 15 C 0.074 3.926 16 C 0.049 3.951 17 O -0.380 6.380 18 C 0.075 3.925 19 H 0.052 0.948 20 C 0.086 3.914 21 O -0.590 6.590 22 C 0.085 3.915 23 H 0.270 0.730 24 H 0.032 0.968 25 H 0.032 0.968 26 H 0.141 0.859 27 H 0.140 0.860 28 H 0.104 0.896 29 H 0.100 0.900 30 H 0.134 0.866 31 H 0.046 0.954 32 H 0.072 0.928 33 H 0.087 0.913 34 H 0.400 0.600 35 H 0.105 0.895 36 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.026 -14.980 -2.687 22.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.184 4.184 3 Si 0.747 3.253 4 H -0.185 1.185 5 H -0.199 1.199 6 H -0.174 1.174 7 C -0.567 4.567 8 H 0.068 0.932 9 C -0.057 4.057 10 C -0.715 4.715 11 S 2.714 3.286 12 O -0.974 6.974 13 O -0.975 6.975 14 N -0.841 5.841 15 C -0.051 4.051 16 C -0.029 4.029 17 O -0.298 6.298 18 C 0.015 3.985 19 H 0.070 0.930 20 C 0.007 3.993 21 O -0.399 6.399 22 C -0.041 4.041 23 H 0.079 0.921 24 H 0.050 0.950 25 H 0.050 0.950 26 H 0.159 0.841 27 H 0.158 0.842 28 H 0.123 0.877 29 H 0.118 0.882 30 H 0.151 0.849 31 H 0.064 0.936 32 H 0.090 0.910 33 H 0.105 0.895 34 H 0.251 0.749 35 H 0.123 0.877 36 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 16.583 -13.996 -2.145 21.805 hybrid contribution -0.876 0.593 -0.399 1.131 sum 15.706 -13.402 -2.544 20.804 Atomic orbital electron populations 1.70005 1.07894 1.28428 1.51588 1.25869 0.95624 1.03005 0.93941 0.86029 0.79896 0.79419 0.79921 1.18451 1.19910 1.17354 1.21166 0.90211 0.93889 1.51441 0.93217 1.19383 0.97251 0.91156 0.97880 1.30306 1.22666 1.05997 1.12566 1.04734 0.78085 0.72781 0.73037 1.93500 1.78968 1.78764 1.46205 1.93504 1.78993 1.78689 1.46312 1.57687 1.84845 1.28829 1.12752 1.22336 0.99998 0.97610 0.85128 1.22986 0.95381 0.95959 0.88565 1.87971 1.94341 1.33876 1.13654 1.22503 0.96096 0.93608 0.86276 0.92984 1.22163 0.85484 0.96312 0.95303 1.86466 1.33156 1.65995 1.54313 1.22220 0.98492 0.97588 0.85754 0.92083 0.94995 0.95012 0.84079 0.84197 0.87736 0.88192 0.84878 0.93570 0.90955 0.89539 0.74944 0.87713 0.87442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.28 13.96 21.45 0.30 -56.98 16 2 C 0.01 0.82 5.47 84.65 0.46 1.28 16 3 Si 0.92 43.36 27.47 68.60 1.88 45.24 16 4 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 5 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 6 H -0.25 -11.12 6.54 99.48 0.65 -10.47 16 7 C -0.53 -29.47 9.66 25.60 0.25 -29.22 16 8 H 0.05 2.96 7.99 -2.91 -0.02 2.94 16 9 C -0.02 -0.81 4.05 29.85 0.12 -0.69 16 10 C -0.58 -20.19 6.12 71.98 0.44 -19.75 16 11 S 2.62 83.84 5.47 -56.49 -0.31 83.54 16 12 O -0.98 -36.00 16.62 -127.65 -2.12 -38.12 16 13 O -0.98 -36.43 16.61 -127.65 -2.12 -38.55 16 14 N -1.00 -24.20 3.28 -512.35 -1.68 -25.88 16 15 C 0.07 1.48 6.64 86.21 0.57 2.06 16 16 C 0.05 0.94 6.97 71.94 0.50 1.45 16 17 O -0.38 -8.54 10.35 -144.70 -1.50 -10.04 16 18 C 0.07 1.56 3.06 30.69 0.09 1.66 16 19 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 20 C 0.09 1.29 6.71 71.98 0.48 1.77 16 21 O -0.59 -10.13 13.63 -144.70 -1.97 -12.11 16 22 C 0.08 1.70 5.96 86.35 0.51 2.22 16 23 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 24 H 0.03 1.46 7.20 -2.39 -0.02 1.44 16 25 H 0.03 1.43 7.57 -2.39 -0.02 1.41 16 26 H 0.14 4.37 8.14 -2.39 -0.02 4.35 16 27 H 0.14 4.39 8.14 -2.39 -0.02 4.37 16 28 H 0.10 2.14 6.87 -2.39 -0.02 2.13 16 29 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.13 1.79 8.14 -2.38 -0.02 1.77 16 31 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.09 0.92 8.14 -2.38 -0.02 0.91 16 34 H 0.40 2.69 9.12 -74.06 -0.68 2.02 16 35 H 0.10 1.59 8.14 -2.38 -0.02 1.57 16 36 H 0.11 2.15 6.88 -2.39 -0.02 2.13 16 Total: -1.00 -77.34 310.00 -3.73 -81.06 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: 0.35 Total: 11.07 kcal Atomic # 6 Polarization: -42.67 SS G_CDS: 3.44 Total: -39.23 kcal Atomic # 7 Polarization: -81.48 SS G_CDS: -1.38 Total: -82.86 kcal Atomic # 8 Polarization: -91.10 SS G_CDS: -7.71 Total: -98.81 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 1.88 Total: 45.24 kcal Atomic # 16 Polarization: 83.84 SS G_CDS: -0.31 Total: 83.54 kcal Total: -77.34 -3.73 -81.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408433062.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.713 kcal (2) G-P(sol) polarization free energy of solvation -77.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds