Wall clock time and date at job start Wed Apr 15 2020 11:44:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48493 * 109.47326 * 90.00391 * 3 2 1 5 5 H 1.48506 * 109.46545 * 210.00141 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99852 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99349 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00472 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47460 * 180.02562 * 9 7 2 11 11 S 1.81394 * 109.47321 * 179.97438 * 10 9 7 12 12 O 1.42100 * 110.54481 * 291.62048 * 11 10 9 13 13 O 1.42105 * 110.54185 * 68.37636 * 11 10 9 14 14 N 1.65600 * 104.45039 * 179.97438 * 11 10 9 15 15 C 1.47156 * 120.97826 * 90.00043 * 14 11 10 16 16 C 1.53298 * 108.38339 * 129.44460 * 15 14 11 17 17 O 1.42963 * 109.22234 * 52.30311 * 16 15 14 18 18 C 1.42963 * 114.16687 * 297.41597 * 17 16 15 19 19 H 1.08997 * 109.51379 * 302.60897 * 18 17 16 20 20 C 1.53003 * 109.51284 * 182.50578 * 18 17 16 21 21 O 1.42899 * 109.46749 * 65.00129 * 20 18 17 22 22 C 1.47148 * 120.98785 * 269.72153 * 14 11 10 23 23 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 24 24 H 1.09005 * 109.46730 * 299.99869 * 9 7 2 25 25 H 1.08998 * 109.47044 * 59.99820 * 9 7 2 26 26 H 1.09003 * 109.46788 * 300.00488 * 10 9 7 27 27 H 1.08999 * 109.46950 * 59.99414 * 10 9 7 28 28 H 1.09004 * 109.68209 * 249.16658 * 15 14 11 29 29 H 1.08999 * 109.68539 * 9.67935 * 15 14 11 30 30 H 1.08999 * 109.50949 * 172.22552 * 16 15 14 31 31 H 1.08994 * 109.51021 * 292.37397 * 16 15 14 32 32 H 1.08998 * 109.46712 * 184.99989 * 20 18 17 33 33 H 1.08996 * 109.46670 * 305.00193 * 20 18 17 34 34 H 0.96696 * 113.99632 * 179.97438 * 21 20 18 35 35 H 1.09000 * 109.67798 * 350.27774 * 22 14 11 36 36 H 1.08998 * 109.68486 * 110.82823 * 22 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 1.4000 5 1 3.5467 1.4400 -0.7001 6 1 1.4466 2.6526 -0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2450 -3.6622 -0.0005 11 16 1.3380 -5.2330 0.0002 12 8 0.6644 -5.4194 1.2375 13 8 0.6635 -5.4200 -1.2365 14 7 2.5200 -6.3928 -0.0006 15 6 3.0616 -6.9232 1.2608 16 6 3.0181 -8.4543 1.1997 17 8 3.6566 -8.8958 -0.0009 18 6 3.0162 -8.4549 -1.2006 19 1 1.9793 -8.7909 -1.2045 20 6 3.7463 -9.0362 -2.4130 21 8 3.6107 -10.4588 -2.4135 22 6 3.0556 -6.9278 -1.2624 23 1 -0.4850 0.8401 0.0004 24 1 0.6246 -2.5570 0.8898 25 1 0.6239 -2.5567 -0.8903 26 1 2.8717 -3.6044 -0.8905 27 1 2.8717 -3.6044 0.8894 28 1 4.0918 -6.5899 1.3869 29 1 2.4571 -6.5712 2.0967 30 1 3.5396 -8.8680 2.0627 31 1 1.9810 -8.7895 1.2050 32 1 3.3135 -8.6296 -3.3270 33 1 4.8025 -8.7719 -2.3621 34 1 4.0499 -10.8954 -3.1562 35 1 2.4466 -6.5795 -2.0966 36 1 4.0851 -6.5950 -1.3947 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408433064.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:08 Heat of formation + Delta-G solvation = -167.908544 kcal Electronic energy + Delta-G solvation = -20548.252083 eV Core-core repulsion = 17159.818964 eV Total energy + Delta-G solvation = -3388.433119 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.102 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.58993 -36.87899 -36.71873 -35.56281 -34.77892 -33.93323 -32.21170 -31.20443 -28.14477 -25.77206 -25.46148 -23.14641 -21.62469 -21.12127 -18.68449 -17.75936 -17.64656 -16.88599 -16.61304 -15.95765 -15.61152 -15.30474 -15.01726 -14.74583 -14.56305 -14.26874 -13.98542 -13.47916 -13.09540 -12.57921 -12.55253 -11.99977 -11.94126 -11.80822 -11.68731 -11.37996 -11.26660 -11.11296 -11.00920 -10.70294 -10.45560 -10.42507 -10.35172 -10.20769 -9.78688 -9.33638 -8.75684 -8.53864 -6.15939 -4.21849 0.63465 2.84567 3.23758 3.30083 3.32705 3.51508 3.86703 4.21321 4.34613 4.49561 4.59953 4.70896 4.86801 4.92530 5.06717 5.15679 5.19273 5.27357 5.28424 5.33833 5.43654 5.56139 5.66956 5.67554 5.81712 5.98638 6.42916 6.45251 7.00309 7.24986 7.30757 7.37179 7.76884 8.13302 8.81519 9.43171 10.95062 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.033074 B = 0.004051 C = 0.003954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.388246 B = 6910.447774 C = 7079.452426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.901 3.099 4 H -0.278 1.278 5 H -0.273 1.273 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.061 0.939 9 C 0.027 3.973 10 C -0.586 4.586 11 S 2.589 3.411 12 O -0.961 6.961 13 O -0.962 6.962 14 N -1.009 6.009 15 C 0.081 3.919 16 C 0.052 3.948 17 O -0.369 6.369 18 C 0.080 3.920 19 H 0.071 0.929 20 C 0.085 3.915 21 O -0.566 6.566 22 C 0.091 3.909 23 H 0.265 0.735 24 H 0.033 0.967 25 H 0.034 0.966 26 H 0.120 0.880 27 H 0.120 0.880 28 H 0.076 0.924 29 H 0.106 0.894 30 H 0.105 0.895 31 H 0.057 0.943 32 H 0.066 0.934 33 H 0.057 0.943 34 H 0.379 0.621 35 H 0.107 0.893 36 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.359 -16.814 -2.448 19.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.145 4.145 3 Si 0.728 3.272 4 H -0.204 1.204 5 H -0.198 1.198 6 H -0.210 1.210 7 C -0.561 4.561 8 H 0.080 0.920 9 C -0.012 4.012 10 C -0.719 4.719 11 S 2.688 3.312 12 O -0.952 6.952 13 O -0.953 6.953 14 N -0.845 5.845 15 C -0.045 4.045 16 C -0.026 4.026 17 O -0.288 6.288 18 C 0.020 3.980 19 H 0.089 0.911 20 C 0.007 3.993 21 O -0.371 6.371 22 C -0.035 4.035 23 H 0.075 0.925 24 H 0.052 0.948 25 H 0.052 0.948 26 H 0.138 0.862 27 H 0.138 0.862 28 H 0.094 0.906 29 H 0.124 0.876 30 H 0.123 0.877 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.226 0.774 35 H 0.125 0.875 36 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 8.079 -16.893 -1.900 18.821 hybrid contribution 1.152 1.400 -0.455 1.869 sum 9.231 -15.493 -2.354 18.188 Atomic orbital electron populations 1.69956 1.06131 1.27255 1.49467 1.25073 0.94983 0.99573 0.94842 0.86454 0.79698 0.82783 0.78266 1.20436 1.19750 1.20968 1.20994 0.93065 0.89721 1.52297 0.92030 1.18979 0.92703 0.90580 0.98901 1.30469 1.13626 1.17710 1.10133 1.05805 0.74745 0.76448 0.74156 1.93531 1.71128 1.85215 1.45283 1.93528 1.71174 1.85218 1.45355 1.58074 1.59364 1.56207 1.10878 1.22142 1.00568 0.95350 0.86392 1.22913 0.98551 0.93294 0.87890 1.87969 1.53452 1.74234 1.13108 1.22310 0.97530 0.92710 0.85401 0.91075 1.22106 0.99721 0.81637 0.95852 1.86534 1.79162 1.18896 1.52502 1.21858 1.00915 0.93766 0.86949 0.92485 0.94837 0.94815 0.86197 0.86180 0.90585 0.87628 0.87654 0.92510 0.91566 0.92430 0.77388 0.87523 0.90462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.30 13.29 55.43 0.74 -25.56 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.52 -14.30 9.11 -34.44 -0.31 -14.61 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 9 C 0.03 0.69 4.98 -27.89 -0.14 0.56 16 10 C -0.59 -11.05 6.12 37.16 0.23 -10.82 16 11 S 2.59 46.09 5.47 -107.50 -0.59 45.50 16 12 O -0.96 -19.52 16.62 -57.54 -0.96 -20.48 16 13 O -0.96 -19.45 16.61 -57.54 -0.96 -20.41 16 14 N -1.01 -13.88 3.28 -113.29 -0.37 -14.25 16 15 C 0.08 0.95 6.67 -3.53 -0.02 0.93 16 16 C 0.05 0.57 6.99 37.31 0.26 0.84 16 17 O -0.37 -4.69 10.35 -39.97 -0.41 -5.11 16 18 C 0.08 0.95 3.05 -26.79 -0.08 0.86 16 19 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 20 C 0.09 0.77 6.71 37.16 0.25 1.02 16 21 O -0.57 -5.57 13.63 -39.97 -0.54 -6.12 16 22 C 0.09 1.08 5.94 -3.75 -0.02 1.05 16 23 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 24 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 26 H 0.12 2.02 8.14 -51.92 -0.42 1.60 16 27 H 0.12 2.04 8.14 -51.92 -0.42 1.61 16 28 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.11 1.25 6.88 -51.93 -0.36 0.89 16 30 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.38 1.77 9.12 45.56 0.42 2.18 16 35 H 0.11 1.25 6.87 -51.93 -0.36 0.89 16 36 H 0.08 0.75 8.13 -51.93 -0.42 0.33 16 LS Contribution 313.59 15.07 4.73 4.73 Total: -1.00 -36.21 313.59 -7.82 -44.03 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: -4.49 Total: 0.32 kcal Atomic # 6 Polarization: -18.71 SS G_CDS: 0.06 Total: -18.65 kcal Atomic # 7 Polarization: -40.18 SS G_CDS: 0.36 Total: -39.82 kcal Atomic # 8 Polarization: -49.24 SS G_CDS: -2.87 Total: -52.11 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 16 Polarization: 46.09 SS G_CDS: -0.59 Total: 45.50 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -36.21 -7.82 -44.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408433064.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.879 kcal (2) G-P(sol) polarization free energy of solvation -36.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds