Wall clock time and date at job start Wed Apr 15 2020 11:44:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48493 * 109.47326 * 90.00391 * 3 2 1 5 5 H 1.48506 * 109.46545 * 210.00141 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99852 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99349 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00472 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47460 * 180.02562 * 9 7 2 11 11 S 1.81394 * 109.47321 * 179.97438 * 10 9 7 12 12 O 1.42100 * 110.54481 * 291.62048 * 11 10 9 13 13 O 1.42105 * 110.54185 * 68.37636 * 11 10 9 14 14 N 1.65600 * 104.45039 * 179.97438 * 11 10 9 15 15 C 1.47156 * 120.97826 * 90.00043 * 14 11 10 16 16 C 1.53298 * 108.38339 * 129.44460 * 15 14 11 17 17 O 1.42963 * 109.22234 * 52.30311 * 16 15 14 18 18 C 1.42963 * 114.16687 * 297.41597 * 17 16 15 19 19 H 1.08997 * 109.51379 * 302.60897 * 18 17 16 20 20 C 1.53003 * 109.51284 * 182.50578 * 18 17 16 21 21 O 1.42899 * 109.46749 * 65.00129 * 20 18 17 22 22 C 1.47148 * 120.98785 * 269.72153 * 14 11 10 23 23 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 24 24 H 1.09005 * 109.46730 * 299.99869 * 9 7 2 25 25 H 1.08998 * 109.47044 * 59.99820 * 9 7 2 26 26 H 1.09003 * 109.46788 * 300.00488 * 10 9 7 27 27 H 1.08999 * 109.46950 * 59.99414 * 10 9 7 28 28 H 1.09004 * 109.68209 * 249.16658 * 15 14 11 29 29 H 1.08999 * 109.68539 * 9.67935 * 15 14 11 30 30 H 1.08999 * 109.50949 * 172.22552 * 16 15 14 31 31 H 1.08994 * 109.51021 * 292.37397 * 16 15 14 32 32 H 1.08998 * 109.46712 * 184.99989 * 20 18 17 33 33 H 1.08996 * 109.46670 * 305.00193 * 20 18 17 34 34 H 0.96696 * 113.99632 * 179.97438 * 21 20 18 35 35 H 1.09000 * 109.67798 * 350.27774 * 22 14 11 36 36 H 1.08998 * 109.68486 * 110.82823 * 22 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 1.4000 5 1 3.5467 1.4400 -0.7001 6 1 1.4466 2.6526 -0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2450 -3.6622 -0.0005 11 16 1.3380 -5.2330 0.0002 12 8 0.6644 -5.4194 1.2375 13 8 0.6635 -5.4200 -1.2365 14 7 2.5200 -6.3928 -0.0006 15 6 3.0616 -6.9232 1.2608 16 6 3.0181 -8.4543 1.1997 17 8 3.6566 -8.8958 -0.0009 18 6 3.0162 -8.4549 -1.2006 19 1 1.9793 -8.7909 -1.2045 20 6 3.7463 -9.0362 -2.4130 21 8 3.6107 -10.4588 -2.4135 22 6 3.0556 -6.9278 -1.2624 23 1 -0.4850 0.8401 0.0004 24 1 0.6246 -2.5570 0.8898 25 1 0.6239 -2.5567 -0.8903 26 1 2.8717 -3.6044 -0.8905 27 1 2.8717 -3.6044 0.8894 28 1 4.0918 -6.5899 1.3869 29 1 2.4571 -6.5712 2.0967 30 1 3.5396 -8.8680 2.0627 31 1 1.9810 -8.7895 1.2050 32 1 3.3135 -8.6296 -3.3270 33 1 4.8025 -8.7719 -2.3621 34 1 4.0499 -10.8954 -3.1562 35 1 2.4466 -6.5795 -2.0966 36 1 4.0851 -6.5950 -1.3947 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408433064.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:08 Heat of formation + Delta-G solvation = -198.909846 kcal Electronic energy + Delta-G solvation = -20549.596400 eV Core-core repulsion = 17159.818964 eV Total energy + Delta-G solvation = -3389.777436 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.102 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.49839 -38.31413 -37.54271 -37.09315 -35.92397 -35.79694 -33.14590 -33.07108 -29.05905 -27.60881 -26.49249 -24.10189 -23.43427 -22.07282 -19.97205 -19.21935 -18.46873 -18.37099 -17.77360 -17.19363 -17.11744 -16.56721 -16.17458 -16.01817 -15.94012 -15.20113 -15.12673 -14.80472 -14.44921 -13.91171 -13.75206 -13.65535 -13.31031 -13.26747 -13.02235 -12.94022 -12.80618 -12.55174 -12.26857 -12.15786 -12.08332 -11.80557 -11.55627 -11.31404 -11.11069 -10.91105 -10.65795 -9.85074 -8.27163 -6.41524 -0.80936 1.41004 1.42678 1.53795 1.59673 2.37462 2.68892 2.78971 3.01300 3.06551 3.29087 3.55598 3.86148 4.00982 4.03070 4.07701 4.14569 4.28184 4.33802 4.42092 4.58386 4.60303 4.62859 4.72889 4.81455 4.96415 5.02812 5.23778 5.25399 5.43370 5.66971 6.04435 6.12009 6.72194 6.94933 7.28979 8.85075 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.033074 B = 0.004051 C = 0.003954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.388246 B = 6910.447774 C = 7079.452426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.004 4.004 3 Si 0.975 3.025 4 H -0.271 1.271 5 H -0.257 1.257 6 H -0.283 1.283 7 C -0.540 4.540 8 H 0.076 0.924 9 C 0.019 3.981 10 C -0.582 4.582 11 S 2.612 3.388 12 O -0.991 6.991 13 O -0.991 6.991 14 N -1.002 6.002 15 C 0.074 3.926 16 C 0.049 3.951 17 O -0.378 6.378 18 C 0.074 3.926 19 H 0.049 0.951 20 C 0.087 3.913 21 O -0.590 6.590 22 C 0.085 3.915 23 H 0.267 0.733 24 H 0.006 0.994 25 H 0.007 0.993 26 H 0.143 0.857 27 H 0.142 0.858 28 H 0.103 0.897 29 H 0.102 0.898 30 H 0.135 0.865 31 H 0.044 0.956 32 H 0.086 0.914 33 H 0.074 0.926 34 H 0.400 0.600 35 H 0.104 0.896 36 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.147 -17.087 -2.703 21.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.202 4.202 3 Si 0.798 3.202 4 H -0.196 1.196 5 H -0.181 1.181 6 H -0.209 1.209 7 C -0.579 4.579 8 H 0.095 0.905 9 C -0.020 4.020 10 C -0.715 4.715 11 S 2.712 3.288 12 O -0.981 6.981 13 O -0.981 6.981 14 N -0.841 5.841 15 C -0.050 4.050 16 C -0.029 4.029 17 O -0.297 6.297 18 C 0.015 3.985 19 H 0.067 0.933 20 C 0.008 3.992 21 O -0.399 6.399 22 C -0.040 4.040 23 H 0.076 0.924 24 H 0.024 0.976 25 H 0.025 0.975 26 H 0.161 0.839 27 H 0.160 0.840 28 H 0.122 0.878 29 H 0.120 0.880 30 H 0.152 0.848 31 H 0.062 0.938 32 H 0.104 0.896 33 H 0.093 0.907 34 H 0.251 0.749 35 H 0.123 0.877 36 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 10.883 -17.173 -2.168 20.447 hybrid contribution 0.292 1.357 -0.375 1.438 sum 11.176 -15.816 -2.543 19.532 Atomic orbital electron populations 1.70104 1.08103 1.28364 1.50820 1.26125 0.95851 1.03913 0.94324 0.85300 0.78657 0.77587 0.78640 1.19615 1.18071 1.20861 1.21512 0.94005 0.90723 1.51615 0.90549 1.18839 0.93636 0.93116 0.96377 1.30352 1.12661 1.16055 1.12424 1.04798 0.74829 0.76391 0.72824 1.93486 1.72453 1.85670 1.46493 1.93484 1.72471 1.85652 1.46491 1.57700 1.58851 1.54831 1.12742 1.22425 1.01794 0.95718 0.85100 1.23062 0.98397 0.92892 0.88553 1.87964 1.53646 1.74480 1.13600 1.22426 0.96956 0.92745 0.86415 0.93295 1.22153 1.00442 0.81408 0.95156 1.86469 1.79889 1.19441 1.54131 1.22124 1.02354 0.93814 0.85705 0.92369 0.97578 0.97468 0.83859 0.83965 0.87841 0.88016 0.84753 0.93780 0.89611 0.90748 0.74928 0.87733 0.87430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.52 13.29 21.45 0.28 -56.24 16 2 C 0.00 -0.21 5.46 84.66 0.46 0.26 16 3 Si 0.97 42.75 29.54 68.60 2.03 44.78 16 4 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 5 H -0.26 -10.51 7.11 99.48 0.71 -9.81 16 6 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 7 C -0.54 -29.57 9.11 25.60 0.23 -29.33 16 8 H 0.08 3.84 7.74 -2.91 -0.02 3.82 16 9 C 0.02 1.00 4.98 29.85 0.15 1.15 16 10 C -0.58 -21.49 6.12 71.98 0.44 -21.05 16 11 S 2.61 92.78 5.47 -56.49 -0.31 92.47 16 12 O -0.99 -40.85 16.62 -127.65 -2.12 -42.97 16 13 O -0.99 -40.58 16.61 -127.65 -2.12 -42.70 16 14 N -1.00 -25.99 3.28 -512.35 -1.68 -27.67 16 15 C 0.07 1.58 6.67 86.35 0.58 2.16 16 16 C 0.05 1.00 6.99 72.08 0.50 1.50 16 17 O -0.38 -8.81 10.35 -144.45 -1.50 -10.31 16 18 C 0.07 1.63 3.05 30.56 0.09 1.73 16 19 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 20 C 0.09 1.36 6.71 71.98 0.48 1.84 16 21 O -0.59 -10.51 13.63 -144.45 -1.97 -12.48 16 22 C 0.09 1.82 5.94 86.22 0.51 2.34 16 23 H 0.27 15.12 8.31 -92.70 -0.77 14.35 16 24 H 0.01 0.33 8.14 -2.38 -0.02 0.31 16 25 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 26 H 0.14 4.56 8.14 -2.39 -0.02 4.54 16 27 H 0.14 4.56 8.14 -2.39 -0.02 4.54 16 28 H 0.10 1.67 8.14 -2.38 -0.02 1.65 16 29 H 0.10 2.26 6.88 -2.39 -0.02 2.25 16 30 H 0.13 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.40 2.88 9.12 -74.06 -0.68 2.20 16 35 H 0.10 2.29 6.87 -2.39 -0.02 2.28 16 36 H 0.11 1.68 8.13 -2.39 -0.02 1.66 16 Total: -1.00 -79.16 313.59 -3.52 -82.69 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: 0.41 Total: 11.85 kcal Atomic # 6 Polarization: -42.87 SS G_CDS: 3.45 Total: -39.42 kcal Atomic # 7 Polarization: -82.52 SS G_CDS: -1.39 Total: -83.91 kcal Atomic # 8 Polarization: -100.75 SS G_CDS: -7.70 Total: -108.46 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Atomic # 16 Polarization: 92.78 SS G_CDS: -0.31 Total: 92.47 kcal Total: -79.16 -3.52 -82.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408433064.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.223 kcal (2) G-P(sol) polarization free energy of solvation -79.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds