Wall clock time and date at job start Wed Apr 15 2020 11:43:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30660 * 1 3 3 Si 1.86799 * 119.99886 * 2 1 4 4 H 1.48500 * 109.46981 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47394 * 300.00246 * 3 2 1 6 6 H 1.48504 * 109.46771 * 60.00678 * 3 2 1 7 7 C 1.40163 * 119.99781 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99906 * 179.97438 * 7 2 1 9 9 C 1.41073 * 120.00104 * 0.02562 * 7 2 1 10 10 N 1.33655 * 119.13078 * 179.97438 * 9 7 2 11 11 C 1.31569 * 120.83204 * 179.97438 * 10 9 7 12 12 C 1.40467 * 119.09259 * 0.02562 * 11 10 9 13 13 C 1.47873 * 120.79285 * 180.02562 * 12 11 10 14 14 C 1.40746 * 120.29014 * 0.02562 * 13 12 11 15 15 N 1.30780 * 121.50028 * 179.97438 * 14 13 12 16 16 C 1.33793 * 121.79566 * 0.02562 * 15 14 13 17 17 N 1.33831 * 120.62301 * 180.02562 * 16 15 14 18 18 C 1.31367 * 119.86129 * 180.02562 * 17 16 15 19 19 C 1.39678 * 120.80320 * 359.97397 * 18 17 16 20 20 N 1.31356 * 120.55501 * 0.33033 * 19 18 17 21 21 C 1.33711 * 119.68566 * 359.40183 * 20 19 18 22 22 C 1.39003 * 120.28714 * 179.97438 * 13 12 11 23 23 C 1.40461 * 118.41048 * 0.26522 * 12 11 10 24 24 N 1.31571 * 119.09054 * 359.47035 * 23 12 11 25 25 H 0.96999 * 119.99322 * 359.97438 * 1 2 3 26 26 H 1.08004 * 120.45359 * 179.97438 * 11 10 9 27 27 H 1.08006 * 119.24835 * 359.95875 * 14 13 12 28 28 H 1.08004 * 119.59758 * 180.02562 * 18 17 16 29 29 H 1.08001 * 119.71956 * 180.02562 * 19 18 17 30 30 H 1.07998 * 120.99553 * 0.03735 * 22 13 12 31 31 H 1.08000 * 120.45303 * 179.72826 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2406 1.6177 0.0000 4 1 3.7006 1.3464 -0.0006 5 1 1.8818 2.3965 -1.2124 6 1 1.8819 2.3963 1.2126 7 6 2.0074 -1.2139 -0.0005 8 1 3.0873 -1.2139 -0.0010 9 6 1.3020 -2.4356 -0.0016 10 7 1.9877 -3.5828 -0.0027 11 6 1.3640 -4.7413 -0.0032 12 6 -0.0406 -4.7607 -0.0032 13 6 -0.7799 -6.0413 -0.0032 14 6 -0.0824 -7.2638 -0.0027 15 7 -0.7122 -8.4099 -0.0022 16 6 -2.0483 -8.4800 -0.0027 17 7 -2.6687 -9.6659 -0.0017 18 6 -3.9814 -9.7173 -0.0027 19 6 -4.7431 -8.5465 -0.0043 20 7 -4.1591 -7.3699 -0.0113 21 6 -2.8242 -7.2932 -0.0049 22 6 -2.1700 -6.0483 -0.0027 23 6 -0.7259 -3.5346 -0.0084 24 7 -0.0345 -2.4153 -0.0024 25 1 -0.4849 0.8401 0.0004 26 1 1.9242 -5.6646 -0.0044 27 1 0.9976 -7.2551 -0.0029 28 1 -4.4776 -10.6766 -0.0014 29 1 -5.8213 -8.6092 -0.0047 30 1 -2.7307 -5.1253 -0.0029 31 1 -1.8056 -3.5111 -0.0130 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244044965.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:24 Heat of formation + Delta-G solvation = 127.561003 kcal Electronic energy + Delta-G solvation = -19496.672837 eV Core-core repulsion = 16357.502710 eV Total energy + Delta-G solvation = -3139.170127 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.081 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.33030 -39.31862 -37.92387 -34.88923 -34.26104 -32.62458 -32.08638 -31.16963 -29.43468 -26.84202 -25.50349 -24.19434 -23.44562 -22.05650 -21.68180 -19.18789 -18.21373 -17.92096 -17.18007 -16.05939 -15.57411 -15.26340 -15.06727 -14.70391 -14.39362 -14.30851 -13.37344 -13.23505 -12.98444 -12.54709 -12.52137 -12.06411 -11.75181 -11.58829 -11.54921 -11.50777 -11.08601 -10.52703 -10.44525 -10.00917 -9.54930 -9.52969 -9.27939 -9.04458 -8.57639 -7.69393 -7.65028 -6.93261 -5.06442 0.21233 0.52110 1.88533 2.35533 2.71160 2.82453 2.85389 2.92063 3.17672 3.59811 3.73845 4.14669 4.19271 4.30516 4.40176 4.78861 4.93048 5.01095 5.16884 5.32795 5.48791 5.55962 5.58915 5.63008 5.93364 5.96798 6.11645 6.25910 6.55905 6.69786 6.71354 6.97898 7.17308 7.26600 7.65745 7.76935 8.07313 8.14357 8.16577 8.73843 9.69869 9.89622 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.043884 B = 0.003584 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.886928 B = 7810.122767 C = 8438.163074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.683 5.683 2 C 0.053 3.947 3 Si 0.926 3.074 4 H -0.254 1.254 5 H -0.268 1.268 6 H -0.267 1.267 7 C -0.352 4.352 8 H 0.102 0.898 9 C 0.370 3.630 10 N -0.586 5.586 11 C 0.198 3.802 12 C -0.339 4.339 13 C 0.010 3.990 14 C 0.156 3.844 15 N -0.454 5.454 16 C 0.220 3.780 17 N -0.411 5.411 18 C 0.070 3.930 19 C 0.071 3.929 20 N -0.425 5.425 21 C 0.057 3.943 22 C -0.098 4.098 23 C 0.193 3.807 24 N -0.506 5.506 25 H 0.283 0.717 26 H 0.137 0.863 27 H 0.170 0.830 28 H 0.173 0.827 29 H 0.173 0.827 30 H 0.146 0.854 31 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.951 -7.359 -0.004 9.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.302 5.302 2 C -0.177 4.177 3 Si 0.749 3.251 4 H -0.177 1.177 5 H -0.192 1.192 6 H -0.192 1.192 7 C -0.383 4.383 8 H 0.120 0.880 9 C 0.141 3.859 10 N -0.304 5.304 11 C 0.020 3.980 12 C -0.350 4.350 13 C 0.004 3.996 14 C -0.023 4.023 15 N -0.162 5.162 16 C -0.019 4.019 17 N -0.126 5.126 18 C -0.109 4.109 19 C -0.105 4.105 20 N -0.140 5.140 21 C -0.069 4.069 22 C -0.126 4.126 23 C 0.013 3.987 24 N -0.221 5.221 25 H 0.095 0.905 26 H 0.154 0.846 27 H 0.187 0.813 28 H 0.190 0.810 29 H 0.190 0.810 30 H 0.164 0.836 31 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -4.955 -6.828 -0.008 8.436 hybrid contribution -0.914 0.440 0.001 1.014 sum -5.869 -6.388 -0.007 8.675 Atomic orbital electron populations 1.70110 1.07635 1.29263 1.23169 1.26344 0.95261 1.02175 0.93881 0.85938 0.80865 0.79251 0.79095 1.17722 1.19235 1.19229 1.19759 0.95511 0.87845 1.35226 0.87979 1.19988 0.86040 0.90945 0.88956 1.68671 1.40595 0.98389 1.22745 1.22718 0.90154 0.96129 0.88952 1.19502 0.95246 0.92249 1.28008 1.19787 0.92643 0.94218 0.92986 1.23329 1.00729 0.86012 0.92275 1.67344 1.07479 1.29167 1.12222 1.19853 0.91023 0.88897 1.02168 1.68110 1.10257 1.26410 1.07818 1.23941 0.89636 1.00260 0.97067 1.24025 1.01972 0.88766 0.95767 1.68637 1.09345 1.27435 1.08621 1.20166 0.90808 0.95355 1.00551 1.21357 0.93231 0.96042 1.01925 1.23083 0.99228 0.87704 0.88637 1.69372 1.08020 1.26692 1.18044 0.90499 0.84568 0.81299 0.80981 0.81032 0.83613 0.84817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.68 -16.15 11.40 55.56 0.63 -15.51 16 2 C 0.05 1.21 5.50 -17.33 -0.10 1.11 16 3 Si 0.93 16.43 29.56 -169.99 -5.02 11.41 16 4 H -0.25 -4.44 7.11 56.52 0.40 -4.04 16 5 H -0.27 -4.67 7.11 56.52 0.40 -4.27 16 6 H -0.27 -4.67 7.11 56.52 0.40 -4.27 16 7 C -0.35 -8.65 9.35 -37.78 -0.35 -9.00 16 8 H 0.10 2.38 7.85 -52.49 -0.41 1.97 16 9 C 0.37 9.50 7.35 -158.15 -1.16 8.34 16 10 N -0.59 -14.02 10.34 -12.40 -0.13 -14.15 16 11 C 0.20 4.02 10.71 -16.82 -0.18 3.84 16 12 C -0.34 -6.75 5.94 -104.28 -0.62 -7.37 16 13 C 0.01 0.18 5.89 -104.72 -0.62 -0.44 16 14 C 0.16 2.54 10.60 -17.05 -0.18 2.36 16 15 N -0.45 -8.14 10.39 -12.23 -0.13 -8.27 16 16 C 0.22 3.94 7.60 -157.59 -1.20 2.74 16 17 N -0.41 -6.63 10.55 -12.39 -0.13 -6.76 16 18 C 0.07 0.80 11.21 -17.21 -0.19 0.61 16 19 C 0.07 0.81 11.22 -17.22 -0.19 0.61 16 20 N -0.43 -6.56 10.46 -10.78 -0.11 -6.67 16 21 C 0.06 0.99 6.59 -84.78 -0.56 0.43 16 22 C -0.10 -1.70 9.53 -38.39 -0.37 -2.06 16 23 C 0.19 4.20 10.70 -16.83 -0.18 4.02 16 24 N -0.51 -12.76 7.83 -12.40 -0.10 -12.85 16 25 H 0.28 5.93 8.29 -40.82 -0.34 5.59 16 26 H 0.14 2.20 6.33 -52.48 -0.33 1.87 16 27 H 0.17 2.26 6.26 -52.48 -0.33 1.93 16 28 H 0.17 1.17 8.06 -52.48 -0.42 0.75 16 29 H 0.17 1.15 8.06 -52.49 -0.42 0.73 16 30 H 0.15 2.38 6.36 -52.49 -0.33 2.05 16 31 H 0.13 2.57 6.37 -52.49 -0.33 2.24 16 LS Contribution 281.62 15.07 4.24 4.24 Total: -1.00 -30.45 281.62 -8.36 -38.81 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -1.72 Total: 4.56 kcal Atomic # 6 Polarization: 11.09 SS G_CDS: -5.90 Total: 5.19 kcal Atomic # 7 Polarization: -64.25 SS G_CDS: 0.04 Total: -64.21 kcal Atomic # 14 Polarization: 16.43 SS G_CDS: -5.02 Total: 11.41 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -30.45 -8.36 -38.81 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244044965.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.373 kcal (2) G-P(sol) polarization free energy of solvation -30.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds