Wall clock time and date at job start Wed Apr 15 2020 11:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30660 * 1 3 3 Si 1.86799 * 119.99886 * 2 1 4 4 H 1.48500 * 109.46981 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47394 * 300.00246 * 3 2 1 6 6 H 1.48504 * 109.46771 * 60.00678 * 3 2 1 7 7 C 1.40163 * 119.99781 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99906 * 179.97438 * 7 2 1 9 9 C 1.41073 * 120.00104 * 0.02562 * 7 2 1 10 10 N 1.33655 * 119.13078 * 179.97438 * 9 7 2 11 11 C 1.31569 * 120.83204 * 179.97438 * 10 9 7 12 12 C 1.40467 * 119.09259 * 0.02562 * 11 10 9 13 13 C 1.47873 * 120.79285 * 180.02562 * 12 11 10 14 14 C 1.40746 * 120.29014 * 0.02562 * 13 12 11 15 15 N 1.30780 * 121.50028 * 179.97438 * 14 13 12 16 16 C 1.33793 * 121.79566 * 0.02562 * 15 14 13 17 17 N 1.33831 * 120.62301 * 180.02562 * 16 15 14 18 18 C 1.31367 * 119.86129 * 180.02562 * 17 16 15 19 19 C 1.39678 * 120.80320 * 359.97397 * 18 17 16 20 20 N 1.31356 * 120.55501 * 0.33033 * 19 18 17 21 21 C 1.33711 * 119.68566 * 359.40183 * 20 19 18 22 22 C 1.39003 * 120.28714 * 179.97438 * 13 12 11 23 23 C 1.40461 * 118.41048 * 0.26522 * 12 11 10 24 24 N 1.31571 * 119.09054 * 359.47035 * 23 12 11 25 25 H 0.96999 * 119.99322 * 359.97438 * 1 2 3 26 26 H 1.08004 * 120.45359 * 179.97438 * 11 10 9 27 27 H 1.08006 * 119.24835 * 359.95875 * 14 13 12 28 28 H 1.08004 * 119.59758 * 180.02562 * 18 17 16 29 29 H 1.08001 * 119.71956 * 180.02562 * 19 18 17 30 30 H 1.07998 * 120.99553 * 0.03735 * 22 13 12 31 31 H 1.08000 * 120.45303 * 179.72826 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2406 1.6177 0.0000 4 1 3.7006 1.3464 -0.0006 5 1 1.8818 2.3965 -1.2124 6 1 1.8819 2.3963 1.2126 7 6 2.0074 -1.2139 -0.0005 8 1 3.0873 -1.2139 -0.0010 9 6 1.3020 -2.4356 -0.0016 10 7 1.9877 -3.5828 -0.0027 11 6 1.3640 -4.7413 -0.0032 12 6 -0.0406 -4.7607 -0.0032 13 6 -0.7799 -6.0413 -0.0032 14 6 -0.0824 -7.2638 -0.0027 15 7 -0.7122 -8.4099 -0.0022 16 6 -2.0483 -8.4800 -0.0027 17 7 -2.6687 -9.6659 -0.0017 18 6 -3.9814 -9.7173 -0.0027 19 6 -4.7431 -8.5465 -0.0043 20 7 -4.1591 -7.3699 -0.0113 21 6 -2.8242 -7.2932 -0.0049 22 6 -2.1700 -6.0483 -0.0027 23 6 -0.7259 -3.5346 -0.0084 24 7 -0.0345 -2.4153 -0.0024 25 1 -0.4849 0.8401 0.0004 26 1 1.9242 -5.6646 -0.0044 27 1 0.9976 -7.2551 -0.0029 28 1 -4.4776 -10.6766 -0.0014 29 1 -5.8213 -8.6092 -0.0047 30 1 -2.7307 -5.1253 -0.0029 31 1 -1.8056 -3.5111 -0.0130 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244044965.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:23 Heat of formation + Delta-G solvation = 106.774734 kcal Electronic energy + Delta-G solvation = -19497.574198 eV Core-core repulsion = 16357.502710 eV Total energy + Delta-G solvation = -3140.071487 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.081 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.53507 -40.95696 -39.22100 -36.19898 -35.78583 -34.14581 -33.73815 -32.41383 -30.94554 -28.37232 -26.78270 -25.55711 -24.92633 -23.55001 -23.17107 -20.47697 -19.82055 -19.14484 -18.55295 -17.59054 -17.07631 -16.49221 -16.48322 -15.97141 -15.76759 -15.47528 -15.08135 -14.63528 -14.50046 -13.85237 -13.81150 -13.52340 -13.12781 -13.07361 -12.86867 -12.79441 -12.70060 -11.96194 -11.73145 -11.52517 -11.29291 -11.15499 -10.80584 -10.24696 -9.78035 -9.36333 -9.25216 -8.58044 -6.82324 -0.97981 -0.68688 0.46974 0.98013 1.03059 1.39660 1.46699 1.57584 1.89322 2.14722 2.61210 2.65516 3.03228 3.05667 3.13506 3.65659 3.67619 3.80903 3.82966 3.96315 3.96898 4.12320 4.18732 4.27615 4.43482 4.61527 4.84121 4.92037 5.06026 5.11489 5.35833 5.49449 5.65010 6.01261 6.02490 6.36685 6.44803 6.51533 6.93035 7.04954 8.07059 8.20282 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.043884 B = 0.003584 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.886928 B = 7810.122767 C = 8438.163074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.725 5.725 2 C 0.018 3.982 3 Si 1.003 2.997 4 H -0.252 1.252 5 H -0.260 1.260 6 H -0.260 1.260 7 C -0.398 4.398 8 H 0.100 0.900 9 C 0.348 3.652 10 N -0.613 5.613 11 C 0.189 3.811 12 C -0.322 4.322 13 C -0.007 4.007 14 C 0.157 3.843 15 N -0.473 5.473 16 C 0.205 3.795 17 N -0.448 5.448 18 C 0.100 3.900 19 C 0.090 3.910 20 N -0.450 5.450 21 C 0.033 3.967 22 C -0.087 4.087 23 C 0.174 3.826 24 N -0.539 5.539 25 H 0.291 0.709 26 H 0.177 0.823 27 H 0.194 0.806 28 H 0.229 0.771 29 H 0.228 0.772 30 H 0.148 0.852 31 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.067 -9.688 -0.004 12.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.345 5.345 2 C -0.208 4.208 3 Si 0.822 3.178 4 H -0.175 1.175 5 H -0.185 1.185 6 H -0.185 1.185 7 C -0.430 4.430 8 H 0.118 0.882 9 C 0.116 3.884 10 N -0.331 5.331 11 C 0.014 3.986 12 C -0.333 4.333 13 C -0.013 4.013 14 C -0.020 4.020 15 N -0.181 5.181 16 C -0.034 4.034 17 N -0.163 5.163 18 C -0.080 4.080 19 C -0.087 4.087 20 N -0.165 5.165 21 C -0.091 4.091 22 C -0.114 4.114 23 C -0.003 4.003 24 N -0.256 5.256 25 H 0.102 0.898 26 H 0.194 0.806 27 H 0.211 0.789 28 H 0.245 0.755 29 H 0.244 0.756 30 H 0.166 0.834 31 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -7.056 -9.202 -0.008 11.596 hybrid contribution -0.734 0.576 0.001 0.933 sum -7.790 -8.626 -0.007 11.623 Atomic orbital electron populations 1.70162 1.09144 1.30546 1.24685 1.27232 0.95973 1.05027 0.92595 0.84831 0.79261 0.74414 0.79331 1.17526 1.18482 1.18470 1.20003 0.95635 0.88896 1.38495 0.88227 1.20382 0.86591 0.91971 0.89454 1.68704 1.41122 0.99030 1.24289 1.23373 0.90819 0.96594 0.87845 1.19623 0.95339 0.92650 1.25698 1.19633 0.92790 0.93602 0.95239 1.23584 1.01736 0.85141 0.91588 1.67392 1.08104 1.29500 1.13137 1.20137 0.91220 0.89842 1.02176 1.68231 1.12485 1.25610 1.10011 1.25023 0.88253 1.02771 0.91953 1.25046 1.04442 0.87362 0.91881 1.68697 1.08262 1.29711 1.09816 1.20172 0.91966 0.94912 1.02069 1.21539 0.93329 0.96677 0.99851 1.23479 1.00148 0.88007 0.88632 1.69342 1.08224 1.28216 1.19783 0.89775 0.80595 0.78914 0.75468 0.75564 0.83398 0.83147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -35.92 11.40 21.86 0.25 -35.67 16 2 C 0.02 0.83 5.50 85.33 0.47 1.30 16 3 Si 1.00 34.69 29.56 68.60 2.03 36.72 16 4 H -0.25 -8.48 7.11 99.48 0.71 -7.78 16 5 H -0.26 -8.58 7.11 99.48 0.71 -7.88 16 6 H -0.26 -8.58 7.11 99.48 0.71 -7.87 16 7 C -0.40 -20.68 9.35 23.43 0.22 -20.46 16 8 H 0.10 4.95 7.85 -2.91 -0.02 4.93 16 9 C 0.35 18.79 7.35 134.90 0.99 19.78 16 10 N -0.61 -30.45 10.34 -193.15 -2.00 -32.44 16 11 C 0.19 7.77 10.71 85.28 0.91 8.68 16 12 C -0.32 -13.05 5.94 -19.64 -0.12 -13.17 16 13 C -0.01 -0.24 5.89 -19.93 -0.12 -0.35 16 14 C 0.16 4.99 10.60 85.46 0.91 5.90 16 15 N -0.47 -16.45 10.39 -192.61 -2.00 -18.46 16 16 C 0.20 6.95 7.60 134.99 1.03 7.98 16 17 N -0.45 -13.02 10.55 -193.10 -2.04 -15.05 16 18 C 0.10 1.76 11.21 85.11 0.95 2.72 16 19 C 0.09 1.57 11.22 85.11 0.96 2.52 16 20 N -0.45 -12.48 10.46 -188.03 -1.97 -14.44 16 21 C 0.03 1.09 6.59 40.32 0.27 1.35 16 22 C -0.09 -2.96 9.53 23.04 0.22 -2.74 16 23 C 0.17 7.87 10.70 85.27 0.91 8.78 16 24 N -0.54 -28.58 7.83 -193.15 -1.51 -30.09 16 25 H 0.29 12.69 8.29 -92.71 -0.77 11.92 16 26 H 0.18 5.54 6.33 -2.91 -0.02 5.52 16 27 H 0.19 4.90 6.26 -2.91 -0.02 4.88 16 28 H 0.23 1.39 8.06 -2.91 -0.02 1.36 16 29 H 0.23 1.37 8.06 -2.91 -0.02 1.34 16 30 H 0.15 4.83 6.36 -2.91 -0.02 4.81 16 31 H 0.15 6.00 6.37 -2.91 -0.02 5.98 16 Total: -1.00 -71.49 281.62 1.57 -69.92 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: 1.21 Total: 17.23 kcal Atomic # 6 Polarization: 14.69 SS G_CDS: 7.60 Total: 22.29 kcal Atomic # 7 Polarization: -136.89 SS G_CDS: -9.26 Total: -146.16 kcal Atomic # 14 Polarization: 34.69 SS G_CDS: 2.03 Total: 36.72 kcal Total: -71.49 1.57 -69.92 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244044965.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.693 kcal (2) G-P(sol) polarization free energy of solvation -71.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds