Wall clock time and date at job start Wed Apr 15 2020 11:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30676 * 1 3 3 Si 1.86803 * 119.99617 * 2 1 4 4 H 1.48500 * 109.46658 * 240.00203 * 3 2 1 5 5 H 1.48493 * 109.47235 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46885 * 120.00407 * 3 2 1 7 7 C 1.40044 * 119.99928 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99910 * 179.97438 * 7 2 1 9 9 C 1.46370 * 120.00272 * 0.02562 * 7 2 1 10 10 O 1.21687 * 120.00007 * 5.76733 * 9 7 2 11 11 N 1.34780 * 120.00021 * 185.76858 * 9 7 2 12 12 C 1.46926 * 120.62785 * 174.72542 * 11 9 7 13 13 C 1.53195 * 108.89290 * 233.68042 * 12 11 9 14 14 C 1.53045 * 109.31159 * 305.29768 * 13 12 11 15 15 C 1.50696 * 109.45540 * 181.38508 * 14 13 12 16 16 O 1.20765 * 120.00677 * 334.99565 * 15 14 13 17 17 C 1.50705 * 119.99816 * 154.99958 * 15 14 13 18 18 F 1.39897 * 109.47068 * 239.99566 * 17 15 14 19 19 F 1.39902 * 109.47226 * 359.97438 * 17 15 14 20 20 F 1.39908 * 109.47051 * 119.99736 * 17 15 14 21 21 C 1.53038 * 109.53757 * 61.36485 * 14 13 12 22 22 C 1.47205 * 120.81589 * 354.87467 * 11 9 7 23 23 H 0.97000 * 120.00154 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.58427 * 113.82656 * 12 11 9 25 25 H 1.08998 * 109.59126 * 353.53752 * 12 11 9 26 26 H 1.09000 * 109.49637 * 65.24962 * 13 12 11 27 27 H 1.08996 * 109.49819 * 185.31161 * 13 12 11 28 28 H 1.08997 * 109.45981 * 301.34252 * 14 13 12 29 29 H 1.09002 * 109.49574 * 58.58478 * 21 14 13 30 30 H 1.09000 * 109.49638 * 178.64878 * 21 14 13 31 31 H 1.09000 * 109.53145 * 6.52575 * 22 11 9 32 32 H 1.08998 * 109.67177 * 246.22859 * 22 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.0943 1.6965 -1.2126 5 1 1.2757 2.7464 0.0006 6 1 3.0945 1.6964 1.2125 7 6 2.0070 -1.2128 0.0005 8 1 3.0870 -1.2128 0.0001 9 6 1.2752 -2.4804 0.0005 10 8 0.0630 -2.4832 -0.1058 11 7 1.9439 -3.6447 0.1184 12 6 1.2177 -4.9165 0.2359 13 6 1.7098 -5.6552 1.4845 14 6 3.2312 -5.8073 1.4159 15 6 3.7151 -6.5635 2.6262 16 8 3.0654 -6.5536 3.6441 17 6 5.0100 -7.3321 2.5664 18 9 4.7616 -8.6849 2.8220 19 9 5.5757 -7.1946 1.2942 20 9 5.8947 -6.8308 3.5273 21 6 3.8831 -4.4231 1.3852 22 6 3.4157 -3.6705 0.1355 23 1 -0.4850 0.8400 0.0004 24 1 1.4050 -5.5271 -0.6474 25 1 0.1492 -4.7204 0.3248 26 1 1.4410 -5.0853 2.3740 27 1 1.2468 -6.6409 1.5303 28 1 3.5009 -6.3559 0.5134 29 1 3.5937 -3.8649 2.2756 30 1 4.9674 -4.5321 1.3605 31 1 3.7978 -2.6500 0.1591 32 1 3.7841 -4.1781 -0.7560 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320527036.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:28 Heat of formation + Delta-G solvation = -243.426523 kcal Electronic energy + Delta-G solvation = -22345.853484 eV Core-core repulsion = 18276.844969 eV Total energy + Delta-G solvation = -4069.008516 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.087 amu Computer time = 2.28 seconds Orbital eigenvalues (eV) -51.38399 -48.91374 -48.85625 -41.50621 -39.90267 -37.55473 -34.67543 -33.73451 -32.17229 -29.71559 -28.48041 -26.30626 -24.18396 -23.14004 -21.80030 -20.54922 -19.80473 -19.63194 -19.32569 -18.50194 -17.78016 -16.78495 -16.23637 -16.18929 -15.84425 -15.71334 -15.56831 -15.53881 -15.27027 -15.08293 -14.97950 -14.93870 -14.70495 -14.51220 -14.21016 -13.47379 -13.37382 -13.06963 -12.87258 -12.68427 -12.51322 -12.18650 -11.99315 -11.79099 -11.53460 -11.12373 -10.89389 -9.76186 -9.09326 -8.26735 -6.80916 -0.09908 1.02280 1.42298 1.45193 1.56521 2.20162 2.25513 2.48665 2.70441 2.85754 2.98154 3.25502 3.59650 3.65634 3.71883 4.13971 4.17244 4.37969 4.49493 4.73229 4.75264 4.78831 4.94993 4.95343 5.10034 5.26651 5.42913 5.53053 5.79254 6.17355 6.42146 6.90994 7.44457 8.49581 8.69882 Molecular weight = 279.09amu Principal moments of inertia in cm(-1) A = 0.030069 B = 0.004494 C = 0.004195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.961118 B = 6229.431674 C = 6673.656983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.029 3.971 3 Si 0.993 3.007 4 H -0.252 1.252 5 H -0.279 1.279 6 H -0.254 1.254 7 C -0.569 4.569 8 H 0.099 0.901 9 C 0.541 3.459 10 O -0.634 6.634 11 N -0.648 5.648 12 C 0.120 3.880 13 C -0.111 4.111 14 C -0.117 4.117 15 C 0.346 3.654 16 O -0.403 6.403 17 C 0.430 3.570 18 F -0.169 7.169 19 F -0.154 7.154 20 F -0.170 7.170 21 C -0.118 4.118 22 C 0.120 3.880 23 H 0.273 0.727 24 H 0.076 0.924 25 H 0.051 0.949 26 H 0.048 0.952 27 H 0.094 0.906 28 H 0.146 0.854 29 H 0.055 0.945 30 H 0.112 0.888 31 H 0.089 0.911 32 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.050 -12.753 2.479 19.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.186 4.186 3 Si 0.812 3.188 4 H -0.175 1.175 5 H -0.204 1.204 6 H -0.178 1.178 7 C -0.605 4.605 8 H 0.116 0.884 9 C 0.347 3.653 10 O -0.522 6.522 11 N -0.385 5.385 12 C -0.004 4.004 13 C -0.150 4.150 14 C -0.136 4.136 15 C 0.214 3.786 16 O -0.270 6.270 17 C 0.374 3.626 18 F -0.151 7.151 19 F -0.135 7.135 20 F -0.151 7.151 21 C -0.156 4.156 22 C -0.003 4.003 23 H 0.082 0.918 24 H 0.094 0.906 25 H 0.070 0.930 26 H 0.067 0.933 27 H 0.113 0.887 28 H 0.164 0.836 29 H 0.074 0.926 30 H 0.130 0.870 31 H 0.107 0.893 32 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 12.897 -12.695 2.994 18.342 hybrid contribution 0.062 0.498 0.201 0.541 sum 12.958 -12.196 3.196 18.080 Atomic orbital electron populations 1.70190 1.09611 1.28864 1.36807 1.26980 0.95425 1.04965 0.91244 0.85138 0.78256 0.74960 0.80404 1.17536 1.20417 1.17775 1.21508 0.94971 0.89695 1.54340 0.88367 1.18652 0.86495 0.84283 0.75865 1.90547 1.16913 1.87408 1.57299 1.48168 1.06737 1.05520 1.78057 1.21225 0.96794 0.85327 0.97037 1.21776 0.93291 1.01516 0.98396 1.21795 0.97133 0.97849 0.96803 1.25783 0.83511 0.78150 0.91147 1.90536 1.52833 1.50844 1.32789 1.20955 0.87564 0.79091 0.74977 1.93252 1.94219 1.33682 1.93911 1.93262 1.86330 1.95369 1.38559 1.93259 1.70697 1.87115 1.64059 1.21913 1.01774 0.92190 0.99734 1.21677 0.79662 1.02045 0.96884 0.91757 0.90603 0.93019 0.93295 0.88710 0.83607 0.92584 0.86980 0.89261 0.90074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -50.13 11.84 21.83 0.26 -49.87 16 2 C 0.03 1.57 5.50 85.30 0.47 2.04 16 3 Si 0.99 39.79 29.56 68.60 2.03 41.82 16 4 H -0.25 -9.37 7.11 99.48 0.71 -8.67 16 5 H -0.28 -11.01 7.11 99.48 0.71 -10.30 16 6 H -0.25 -9.52 7.11 99.48 0.71 -8.81 16 7 C -0.57 -30.88 8.88 24.83 0.22 -30.66 16 8 H 0.10 4.63 5.66 -2.91 -0.02 4.61 16 9 C 0.54 30.49 7.62 86.36 0.66 31.15 16 10 O -0.63 -42.09 14.48 -4.31 -0.06 -42.15 16 11 N -0.65 -27.40 2.98 -823.29 -2.46 -29.86 16 12 C 0.12 4.28 6.41 86.36 0.55 4.83 16 13 C -0.11 -3.13 4.87 30.67 0.15 -2.98 16 14 C -0.12 -2.53 1.98 -11.51 -0.02 -2.55 16 15 C 0.35 7.51 5.81 29.10 0.17 7.68 16 16 O -0.40 -11.23 16.87 -1.47 -0.02 -11.26 16 17 C 0.43 8.01 3.51 71.24 0.25 8.26 16 18 F -0.17 -3.33 17.30 44.97 0.78 -2.55 16 19 F -0.15 -2.42 16.14 44.97 0.73 -1.69 16 20 F -0.17 -3.47 17.30 44.97 0.78 -2.69 16 21 C -0.12 -2.81 5.34 30.67 0.16 -2.65 16 22 C 0.12 3.67 6.36 86.31 0.55 4.22 16 23 H 0.27 15.12 8.29 -92.71 -0.77 14.35 16 24 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 25 H 0.05 2.25 7.03 -2.39 -0.02 2.23 16 26 H 0.05 1.66 7.92 -2.39 -0.02 1.65 16 27 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 28 H 0.15 2.24 7.49 -2.39 -0.02 2.23 16 29 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.09 2.95 5.33 -2.39 -0.01 2.94 16 32 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -75.22 286.49 6.35 -68.87 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: 1.17 Total: 10.04 kcal Atomic # 6 Polarization: 16.18 SS G_CDS: 3.16 Total: 19.34 kcal Atomic # 7 Polarization: -77.53 SS G_CDS: -2.20 Total: -79.73 kcal Atomic # 8 Polarization: -53.32 SS G_CDS: -0.09 Total: -53.41 kcal Atomic # 9 Polarization: -9.21 SS G_CDS: 2.28 Total: -6.93 kcal Atomic # 14 Polarization: 39.79 SS G_CDS: 2.03 Total: 41.82 kcal Total: -75.22 6.35 -68.87 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320527036.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -174.557 kcal (2) G-P(sol) polarization free energy of solvation -75.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -249.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -243.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.28 seconds