Wall clock time and date at job start Wed Apr 15 2020 11:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47195 * 13.27079 * 3 2 1 5 5 C 1.36901 * 120.00168 * 264.60877 * 4 3 2 6 6 H 1.08002 * 120.00088 * 141.04792 * 5 4 3 7 7 C 1.39027 * 120.00122 * 321.04354 * 5 4 3 8 8 N 1.31386 * 120.00180 * 158.39450 * 7 5 4 9 9 Si 1.86797 * 119.99632 * 338.39790 * 7 5 4 10 10 H 1.48507 * 109.47271 * 91.83706 * 9 7 5 11 11 H 1.48499 * 109.46950 * 211.83334 * 9 7 5 12 12 H 1.48501 * 109.47411 * 331.83309 * 9 7 5 13 13 C 1.34779 * 119.99937 * 84.60743 * 4 3 2 14 14 O 1.21619 * 119.99954 * 184.37965 * 13 4 3 15 15 C 1.47466 * 119.99906 * 4.37515 * 13 4 3 16 16 C 1.39795 * 120.14386 * 54.57299 * 15 13 4 17 17 C 1.37729 * 119.89689 * 180.29296 * 16 15 13 18 18 C 1.50701 * 119.90204 * 179.72452 * 17 16 15 19 19 C 1.38777 * 120.19685 * 359.70937 * 17 16 15 20 20 F 1.35099 * 119.85005 * 179.97438 * 19 17 16 21 21 C 1.38514 * 120.29302 * 0.02562 * 19 17 16 22 22 C 1.38171 * 120.10267 * 0.02562 * 21 19 17 23 23 F 1.35102 * 120.10205 * 179.97438 * 22 21 19 24 24 H 4.40645 * 5.51394 * 180.02562 * 4 1 2 25 25 H 1.09000 * 109.46645 * 253.27390 * 3 2 1 26 26 H 1.08993 * 109.47054 * 133.27569 * 3 2 1 27 27 H 0.96991 * 119.99961 * 180.02562 * 8 7 5 28 28 H 1.07995 * 120.05271 * 0.02665 * 16 15 13 29 29 H 1.09000 * 109.47004 * 269.98036 * 18 17 16 30 30 H 1.08998 * 109.46785 * 29.98634 * 18 17 16 31 31 H 1.09002 * 109.46825 * 149.97883 * 18 17 16 32 32 H 1.08004 * 119.94950 * 180.02562 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.3434 -0.3171 5 6 3.4686 -2.2062 0.6921 6 1 3.2263 -3.2554 0.6078 7 6 4.1193 -1.7320 1.8255 8 7 4.0684 -2.4153 2.9465 9 14 5.0659 -0.1232 1.7544 10 1 4.1725 0.9948 2.1508 11 1 6.2214 -0.1873 2.6850 12 1 5.5565 0.1018 0.3710 13 6 3.2564 -1.7306 -1.6023 14 8 3.5858 -2.8714 -1.8652 15 6 2.9897 -0.7709 -2.6898 16 6 3.6635 0.4534 -2.7266 17 6 3.4061 1.3484 -3.7412 18 6 4.1278 2.6709 -3.7776 19 6 2.4842 1.0360 -4.7304 20 9 2.2367 1.9194 -5.7221 21 6 1.8160 -0.1770 -4.7048 22 6 2.0640 -1.0836 -3.6920 23 9 1.4119 -2.2665 -3.6668 24 1 -1.0498 -0.0003 -0.0003 25 1 3.0091 0.2966 0.9842 26 1 3.0090 0.7052 -0.7482 27 1 4.5220 -2.0843 3.7373 28 1 4.3817 0.6988 -1.9582 29 1 3.5539 3.4134 -3.2232 30 1 5.1126 2.5598 -3.3238 31 1 4.2390 2.9957 -4.8121 32 1 1.1000 -0.4146 -5.4777 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000305949904.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:21 Heat of formation + Delta-G solvation = -43.958941 kcal Electronic energy + Delta-G solvation = -21593.325005 eV Core-core repulsion = 17963.735278 eV Total energy + Delta-G solvation = -3629.589728 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.081 amu Computer time = 4.15 seconds Orbital eigenvalues (eV) -50.14701 -50.10969 -41.32119 -39.39851 -37.32308 -34.65172 -33.68245 -33.44617 -32.22210 -28.53498 -27.76065 -27.29093 -24.72334 -23.45092 -21.05023 -20.28261 -19.36937 -18.70129 -18.51595 -18.02176 -17.69538 -17.11297 -16.63220 -16.45691 -16.10136 -15.87828 -15.63821 -15.45875 -14.95744 -14.61859 -14.53134 -14.39851 -14.12841 -13.99104 -13.37229 -12.99832 -12.88256 -12.71009 -12.55441 -12.47084 -12.02624 -11.48530 -11.23979 -11.14133 -10.67666 -10.21190 -9.95874 -9.66685 -8.58636 -6.27445 -0.45254 -0.16898 1.16464 1.27737 1.42955 1.49561 1.72843 1.87217 2.14082 2.19067 2.60123 2.70776 2.83783 3.20757 3.40925 3.51731 3.58211 3.63200 3.95056 4.15203 4.27665 4.45942 4.51310 4.63711 4.67564 4.82279 4.85969 5.01895 5.11641 5.19811 5.41466 5.60273 5.93787 6.35610 6.65559 6.75007 7.07617 7.59911 8.57854 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.019471 B = 0.006928 C = 0.006225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.667547 B = 4040.378276 C = 4497.226673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.237 4.237 3 C 0.181 3.819 4 N -0.454 5.454 5 C -0.347 4.347 6 H 0.042 0.958 7 C 0.017 3.983 8 N -0.900 5.900 9 Si 0.935 3.065 10 H -0.231 1.231 11 H -0.277 1.277 12 H -0.238 1.238 13 C 0.504 3.496 14 O -0.598 6.598 15 C -0.163 4.163 16 C -0.048 4.048 17 C -0.112 4.112 18 C -0.115 4.115 19 C 0.143 3.857 20 F -0.118 7.118 21 C -0.175 4.175 22 C 0.137 3.863 23 F -0.139 7.139 24 H 0.255 0.745 25 H 0.096 0.904 26 H 0.126 0.874 27 H 0.285 0.715 28 H 0.161 0.839 29 H 0.096 0.904 30 H 0.090 0.910 31 H 0.084 0.916 32 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.700 17.252 -12.543 21.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.238 4.238 3 C 0.061 3.939 4 N -0.174 5.174 5 C -0.475 4.475 6 H 0.060 0.940 7 C -0.187 4.187 8 N -0.536 5.536 9 Si 0.755 3.245 10 H -0.155 1.155 11 H -0.203 1.203 12 H -0.161 1.161 13 C 0.294 3.706 14 O -0.482 6.482 15 C -0.167 4.167 16 C -0.067 4.067 17 C -0.113 4.113 18 C -0.171 4.171 19 C 0.123 3.877 20 F -0.096 7.096 21 C -0.194 4.194 22 C 0.117 3.883 23 F -0.118 7.118 24 H 0.271 0.729 25 H 0.114 0.886 26 H 0.144 0.856 27 H 0.095 0.905 28 H 0.178 0.822 29 H 0.115 0.885 30 H 0.109 0.891 31 H 0.103 0.897 32 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -2.494 16.620 -12.471 20.928 hybrid contribution -0.104 -0.820 0.461 0.947 sum -2.598 15.800 -12.010 20.016 Atomic orbital electron populations 1.25727 0.96606 0.97629 0.99536 1.23815 0.95458 1.02656 1.01891 1.19320 0.85392 0.85684 1.03546 1.43554 1.56229 1.13516 1.04061 1.18582 1.40242 0.91695 0.96932 0.94033 1.26290 0.95939 1.03256 0.93215 1.69847 1.40157 1.42670 1.00908 0.86061 0.79192 0.78516 0.80764 1.15531 1.20277 1.16072 1.18585 0.80944 0.87778 0.83280 1.90655 1.51957 1.21942 1.83677 1.20193 1.01749 0.97628 0.97167 1.21085 0.97793 0.89396 0.98386 1.20156 0.98091 0.99549 0.93528 1.20908 1.00700 0.90672 1.04787 1.17167 0.96486 0.87028 0.86974 1.91538 1.92843 1.66609 1.58654 1.21036 1.04862 0.93125 1.00413 1.17512 0.93043 0.82260 0.95512 1.91515 1.79199 1.44903 1.96152 0.72893 0.88636 0.85633 0.90540 0.82183 0.88517 0.89124 0.89682 0.80552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.72 19.25 74.32 1.43 -4.29 16 2 C -0.24 -9.12 13.58 31.12 0.42 -8.70 16 3 C 0.18 7.22 4.26 84.57 0.36 7.58 16 4 N -0.45 -22.87 2.12 -649.12 -1.38 -24.24 16 5 C -0.35 -20.80 9.35 84.09 0.79 -20.01 16 6 H 0.04 2.95 7.90 -2.91 -0.02 2.93 16 7 C 0.02 0.93 5.27 84.95 0.45 1.38 16 8 N -0.90 -52.94 13.96 21.68 0.30 -52.64 16 9 Si 0.93 38.40 25.20 68.60 1.73 40.13 16 10 H -0.23 -8.10 6.54 99.48 0.65 -7.45 16 11 H -0.28 -11.23 7.11 99.48 0.71 -10.52 16 12 H -0.24 -8.90 7.11 99.48 0.71 -8.20 16 13 C 0.50 25.34 6.75 86.67 0.59 25.93 16 14 O -0.60 -35.97 16.74 -4.09 -0.07 -36.04 16 15 C -0.16 -6.15 4.96 -20.05 -0.10 -6.25 16 16 C -0.05 -1.34 7.25 22.53 0.16 -1.18 16 17 C -0.11 -2.38 5.88 -19.86 -0.12 -2.50 16 18 C -0.11 -1.52 9.83 71.24 0.70 -0.82 16 19 C 0.14 3.13 7.25 22.46 0.16 3.29 16 20 F -0.12 -2.27 16.46 44.97 0.74 -1.53 16 21 C -0.18 -4.38 9.99 22.32 0.22 -4.16 16 22 C 0.14 4.76 7.27 22.67 0.16 4.92 16 23 F -0.14 -5.62 16.66 44.97 0.75 -4.88 16 24 H 0.25 5.53 7.80 -4.43 -0.03 5.49 16 25 H 0.10 3.81 3.60 -2.39 -0.01 3.81 16 26 H 0.13 3.95 4.42 -2.39 -0.01 3.94 16 27 H 0.28 15.13 8.31 -92.71 -0.77 14.36 16 28 H 0.16 4.01 7.25 -2.91 -0.02 3.99 16 29 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.09 1.02 8.08 -2.39 -0.02 1.00 16 31 H 0.08 0.97 7.63 -2.39 -0.02 0.96 16 32 H 0.18 3.40 8.06 -2.91 -0.02 3.37 16 Total: -1.00 -77.74 293.97 8.42 -69.32 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: 1.12 Total: 14.67 kcal Atomic # 6 Polarization: -10.03 SS G_CDS: 5.23 Total: -4.80 kcal Atomic # 7 Polarization: -75.80 SS G_CDS: -1.07 Total: -76.88 kcal Atomic # 8 Polarization: -35.97 SS G_CDS: -0.07 Total: -36.04 kcal Atomic # 9 Polarization: -7.89 SS G_CDS: 1.49 Total: -6.40 kcal Atomic # 14 Polarization: 38.40 SS G_CDS: 1.73 Total: 40.13 kcal Total: -77.74 8.42 -69.32 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305949904.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.360 kcal (2) G-P(sol) polarization free energy of solvation -77.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.15 seconds