Wall clock time and date at job start Wed Apr 15 2020 11:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37991 * 120.01912 * 2 1 4 4 C 1.38254 * 120.20912 * 180.26231 * 3 2 1 5 5 C 1.38857 * 120.25127 * 359.44314 * 4 3 2 6 6 O 1.35910 * 119.98263 * 180.27792 * 5 4 3 7 7 C 1.42898 * 116.99940 * 359.97438 * 6 5 4 8 8 C 1.50697 * 109.47087 * 180.02562 * 7 6 5 9 9 O 1.21288 * 120.00262 * 0.02562 * 8 7 6 10 10 N 1.34783 * 120.00098 * 180.02562 * 8 7 6 11 11 C 1.37099 * 120.00139 * 180.02562 * 10 8 7 12 12 H 1.08006 * 119.99713 * 359.97438 * 11 10 8 13 13 C 1.38947 * 119.99903 * 180.02562 * 11 10 8 14 14 N 1.31418 * 119.99745 * 180.02562 * 13 11 10 15 15 Si 1.86798 * 120.00109 * 359.97438 * 13 11 10 16 16 H 1.48493 * 109.46885 * 90.00542 * 15 13 11 17 17 H 1.48502 * 109.47133 * 210.00124 * 15 13 11 18 18 H 1.48503 * 109.47187 * 330.00454 * 15 13 11 19 19 C 1.38443 * 120.03578 * 0.25794 * 5 4 3 20 20 C 1.39580 * 119.78466 * 0.02562 * 19 5 4 21 21 C 1.47739 * 120.11713 * 180.02562 * 20 19 5 22 22 O 1.21480 * 119.99871 * 173.76042 * 21 20 19 23 23 O 1.34707 * 120.00309 * 353.75771 * 21 20 19 24 24 H 1.09002 * 109.46953 * 263.72228 * 1 2 3 25 25 H 1.09000 * 109.47461 * 23.71650 * 1 2 3 26 26 H 1.09004 * 109.47695 * 143.72458 * 1 2 3 27 27 H 1.08008 * 119.89499 * 0.02562 * 3 2 1 28 28 H 1.08000 * 119.87146 * 179.72279 * 4 3 2 29 29 H 1.08997 * 109.47748 * 300.00555 * 7 6 5 30 30 H 1.09001 * 109.46922 * 60.00472 * 7 6 5 31 31 H 0.96999 * 119.99903 * 0.02562 * 10 8 7 32 32 H 0.96998 * 119.99764 * 179.97438 * 14 13 11 33 33 H 1.07999 * 120.10641 * 179.97438 * 19 5 4 34 34 H 0.96697 * 117.00170 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1948 0.0000 4 6 3.5799 1.1994 -0.0055 5 6 4.2834 0.0023 0.0007 6 8 5.6425 0.0132 0.0009 7 6 6.2809 1.2916 -0.0058 8 6 7.7765 1.1062 -0.0051 9 8 8.2491 -0.0108 0.0002 10 7 8.5889 2.1816 -0.0103 11 6 9.9495 2.0129 -0.0101 12 1 10.3703 1.0182 -0.0054 13 6 10.7870 3.1216 -0.0150 14 7 12.0912 2.9599 -0.0153 15 14 10.0591 4.8419 -0.0224 16 1 9.8665 5.3038 1.3757 17 1 10.9829 5.7672 -0.7265 18 1 8.7495 4.8223 -0.7222 19 6 3.6012 -1.2024 0.0069 20 6 2.2055 -1.2088 0.0065 21 6 1.4700 -2.4901 0.0137 22 8 0.2606 -2.4956 0.1276 23 8 2.1405 -3.6523 -0.1062 24 1 -0.3633 -0.1124 1.0215 25 1 -0.3634 0.9409 -0.4133 26 1 -0.3635 -0.8285 -0.6080 27 1 1.6559 2.1294 0.0004 28 1 4.1146 2.1377 -0.0100 29 1 5.9838 1.8415 -0.8988 30 1 5.9834 1.8510 0.8811 31 1 8.2110 3.0749 -0.0141 32 1 12.6758 3.7338 -0.0191 33 1 4.1473 -2.1341 0.0112 34 1 1.6162 -4.4647 -0.0958 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000386159752.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:30 Heat of formation + Delta-G solvation = -156.857653 kcal Electronic energy + Delta-G solvation = -20522.573610 eV Core-core repulsion = 16999.175743 eV Total energy + Delta-G solvation = -3523.397867 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 3.96 seconds Orbital eigenvalues (eV) -41.79834 -40.98909 -40.00637 -38.42411 -37.13623 -36.09003 -33.85856 -33.04976 -32.48283 -30.15696 -27.63762 -26.27169 -25.38981 -23.29729 -21.99183 -21.38769 -20.45393 -19.46849 -19.00049 -17.89451 -17.29618 -17.17938 -16.95184 -16.76220 -16.41638 -16.34359 -15.38472 -15.28481 -14.80496 -14.70990 -14.38765 -14.32415 -14.23410 -13.85961 -13.25420 -13.14391 -12.92004 -12.78328 -12.54215 -12.44314 -12.22263 -11.97181 -11.87870 -11.56610 -11.21760 -10.55903 -10.32618 -10.19189 -9.17475 -8.44469 -6.08368 -0.42670 0.31044 1.31186 1.36547 1.45817 1.46632 1.75476 1.80534 2.09707 2.23108 2.64783 3.03619 3.10356 3.68367 3.82296 3.91773 3.92268 4.12923 4.22011 4.22312 4.26917 4.42827 4.74435 4.84688 4.89084 4.99047 5.22985 5.24092 5.44417 5.48632 5.51569 5.70785 5.86919 6.29695 6.53925 6.80000 6.94864 7.28331 7.83133 8.72698 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.036162 B = 0.003262 C = 0.002999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.100606 B = 8581.359890 C = 9333.582019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.064 4.064 3 C -0.084 4.084 4 C -0.162 4.162 5 C 0.094 3.906 6 O -0.318 6.318 7 C 0.059 3.941 8 C 0.444 3.556 9 O -0.617 6.617 10 N -0.575 5.575 11 C -0.336 4.336 12 H 0.054 0.946 13 C -0.012 4.012 14 N -0.930 5.930 15 Si 0.967 3.033 16 H -0.254 1.254 17 H -0.275 1.275 18 H -0.223 1.223 19 C -0.105 4.105 20 C -0.111 4.111 21 C 0.532 3.468 22 O -0.525 6.525 23 O -0.509 6.509 24 H 0.074 0.926 25 H 0.086 0.914 26 H 0.075 0.925 27 H 0.173 0.827 28 H 0.166 0.834 29 H 0.122 0.878 30 H 0.123 0.877 31 H 0.395 0.605 32 H 0.282 0.718 33 H 0.135 0.865 34 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.043 1.516 -0.284 26.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.064 4.064 3 C -0.101 4.101 4 C -0.180 4.180 5 C 0.049 3.951 6 O -0.231 6.231 7 C -0.019 4.019 8 C 0.232 3.768 9 O -0.502 6.502 10 N -0.217 5.217 11 C -0.465 4.465 12 H 0.072 0.928 13 C -0.211 4.211 14 N -0.570 5.570 15 Si 0.786 3.214 16 H -0.178 1.178 17 H -0.200 1.200 18 H -0.146 1.146 19 C -0.124 4.124 20 C -0.112 4.112 21 C 0.378 3.622 22 O -0.417 6.417 23 O -0.324 6.324 24 H 0.092 0.908 25 H 0.105 0.895 26 H 0.093 0.907 27 H 0.191 0.809 28 H 0.184 0.816 29 H 0.140 0.860 30 H 0.140 0.860 31 H 0.232 0.768 32 H 0.091 0.909 33 H 0.153 0.847 34 H 0.296 0.704 Dipole moment (debyes) X Y Z Total from point charges -25.468 1.014 -0.258 25.490 hybrid contribution 0.402 -0.034 0.035 0.405 sum -25.067 0.979 -0.223 25.087 Atomic orbital electron populations 1.21022 0.88761 1.03884 1.03296 1.20237 0.97741 0.91150 0.97316 1.21204 0.92774 0.98436 0.97700 1.21933 0.95972 0.97530 1.02595 1.19159 0.82108 0.95084 0.98769 1.86171 1.16857 1.31270 1.88816 1.22495 0.88463 0.84726 1.06237 1.20454 0.89128 0.84680 0.82562 1.90592 1.78059 1.26335 1.55210 1.41768 1.05394 1.07567 1.66973 1.18991 0.80957 0.95299 1.51232 0.92762 1.26192 0.95259 1.04199 0.95476 1.69805 1.04418 1.33525 1.49239 0.85350 0.80132 0.75755 0.80208 1.17840 1.20030 1.14623 1.20661 0.92766 0.97420 1.01557 1.18748 0.91945 0.91101 1.09456 1.20772 0.84950 0.84692 0.71811 1.90837 1.15610 1.88047 1.47223 1.84581 1.45704 1.17593 1.84484 0.90767 0.89507 0.90669 0.80944 0.81645 0.86027 0.85952 0.76816 0.90873 0.84693 0.70430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.79 8.72 71.24 0.62 -1.17 16 2 C -0.06 -1.21 5.92 -19.59 -0.12 -1.32 16 3 C -0.08 -1.26 9.65 22.21 0.21 -1.05 16 4 C -0.16 -2.95 9.03 22.42 0.20 -2.74 16 5 C 0.09 2.47 6.68 22.47 0.15 2.62 16 6 O -0.32 -10.77 9.67 -73.50 -0.71 -11.48 16 7 C 0.06 1.71 5.22 71.23 0.37 2.08 16 8 C 0.44 19.94 7.86 87.66 0.69 20.63 16 9 O -0.62 -35.61 16.07 15.98 0.26 -35.35 16 10 N -0.57 -25.95 5.09 -306.98 -1.56 -27.52 16 11 C -0.34 -19.27 10.16 84.04 0.85 -18.42 16 12 H 0.05 3.76 7.39 -2.91 -0.02 3.74 16 13 C -0.01 -0.64 5.50 84.92 0.47 -0.17 16 14 N -0.93 -54.86 13.96 21.66 0.30 -54.55 16 15 Si 0.97 36.29 27.74 68.60 1.90 38.20 16 16 H -0.25 -8.98 7.11 99.48 0.71 -8.27 16 17 H -0.28 -10.37 7.11 99.48 0.71 -9.67 16 18 H -0.22 -6.71 6.52 99.48 0.65 -6.06 16 19 C -0.11 -2.75 9.55 22.64 0.22 -2.53 16 20 C -0.11 -2.55 5.87 -20.11 -0.12 -2.67 16 21 C 0.53 11.64 8.20 70.33 0.58 12.21 16 22 O -0.53 -12.63 14.12 19.90 0.28 -12.35 16 23 O -0.51 -8.92 12.70 -56.17 -0.71 -9.63 16 24 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 25 H 0.09 0.90 8.04 -2.39 -0.02 0.88 16 26 H 0.07 1.44 5.85 -2.38 -0.01 1.43 16 27 H 0.17 1.32 8.06 -2.91 -0.02 1.30 16 28 H 0.17 2.00 6.28 -2.91 -0.02 1.99 16 29 H 0.12 2.56 7.66 -2.39 -0.02 2.55 16 30 H 0.12 2.56 7.66 -2.39 -0.02 2.54 16 31 H 0.40 13.94 5.76 -92.71 -0.53 13.41 16 32 H 0.28 15.09 8.31 -92.71 -0.77 14.32 16 33 H 0.14 3.72 7.63 -2.91 -0.02 3.69 16 34 H 0.43 3.15 9.11 -74.06 -0.67 2.48 16 Total: -1.00 -83.53 302.32 3.79 -79.73 By element: Atomic # 1 Polarization: 25.57 SS G_CDS: -0.09 Total: 25.48 kcal Atomic # 6 Polarization: 3.35 SS G_CDS: 4.13 Total: 7.48 kcal Atomic # 7 Polarization: -80.81 SS G_CDS: -1.26 Total: -82.07 kcal Atomic # 8 Polarization: -67.93 SS G_CDS: -0.89 Total: -68.81 kcal Atomic # 14 Polarization: 36.29 SS G_CDS: 1.90 Total: 38.20 kcal Total: -83.53 3.79 -79.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000386159752.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.126 kcal (2) G-P(sol) polarization free energy of solvation -83.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.97 seconds