Wall clock time and date at job start Wed Apr 15 2020 11:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.37947 * 120.07838 * 2 1 4 4 C 1.38363 * 120.15675 * 179.72460 * 3 2 1 5 5 C 1.50698 * 119.84592 * 180.30074 * 4 3 2 6 6 C 1.38405 * 120.30816 * 0.27972 * 4 3 2 7 7 N 1.48020 * 119.92153 * 180.02562 * 6 4 3 8 8 O 1.31697 * 120.00243 * 89.99518 * 7 6 4 9 9 O 1.31706 * 119.99728 * 270.00281 * 7 6 4 10 10 C 1.37908 * 120.16072 * 359.97438 * 6 4 3 11 11 C 1.50694 * 120.07939 * 180.02562 * 10 6 4 12 12 C 1.39667 * 120.08152 * 180.27700 * 2 1 3 13 13 C 1.47643 * 120.15275 * 359.97438 * 12 2 1 14 14 O 1.21438 * 119.99704 * 270.29717 * 13 12 2 15 15 O 1.35045 * 120.00351 * 90.29602 * 13 12 2 16 16 C 1.22525 * 117.00397 * 180.02562 * 15 13 12 17 17 H 1.08004 * 119.99390 * 359.97438 * 16 15 13 18 18 C 1.46578 * 120.00247 * 179.97438 * 16 15 13 19 19 N 1.29381 * 119.99973 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99957 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.46932 * 89.99811 * 20 18 16 22 22 H 1.48500 * 109.47049 * 210.00143 * 20 18 16 23 23 H 1.48502 * 109.47315 * 330.00230 * 20 18 16 24 24 H 1.09009 * 109.47189 * 89.99628 * 1 2 3 25 25 H 1.09000 * 109.47097 * 209.99455 * 1 2 3 26 26 H 1.09000 * 109.47584 * 329.99815 * 1 2 3 27 27 H 1.08002 * 119.92527 * 0.02562 * 3 2 1 28 28 H 1.08999 * 109.46933 * 90.00077 * 5 4 3 29 29 H 1.09000 * 109.47023 * 209.99823 * 5 4 3 30 30 H 1.08996 * 109.47101 * 330.00360 * 5 4 3 31 31 H 1.09005 * 109.46921 * 90.00314 * 11 10 6 32 32 H 1.09002 * 109.47099 * 210.00032 * 11 10 6 33 33 H 1.08995 * 109.47488 * 329.99956 * 11 10 6 34 34 H 0.96995 * 119.99702 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1937 0.0000 4 6 3.5819 1.1956 0.0058 5 6 4.3301 2.5037 0.0126 6 6 4.2820 0.0017 0.0057 7 7 5.7622 0.0137 0.0125 8 8 6.4155 0.0161 1.1559 9 8 6.4258 0.0222 -1.1252 10 6 3.6040 -1.1992 0.0005 11 6 4.3681 -2.4980 0.0010 12 6 2.2070 -1.2085 -0.0058 13 6 1.4740 -2.4902 -0.0115 14 8 1.1683 -3.0193 1.0379 15 8 1.1435 -3.0740 -1.1835 16 6 0.5354 -4.1360 -1.1241 17 1 0.2881 -4.5635 -0.1636 18 6 0.1436 -4.8262 -2.3564 19 7 0.4394 -4.3137 -3.5069 20 14 -0.7829 -6.4457 -2.2656 21 1 -2.2438 -6.1796 -2.2445 22 1 -0.4478 -7.2748 -3.4512 23 1 -0.3938 -7.1700 -1.0290 24 1 -0.3634 0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5137 26 1 -0.3634 0.8899 0.5138 27 1 1.6584 2.1291 0.0004 28 1 4.5062 2.8162 1.0419 29 1 5.2852 2.3787 -0.4976 30 1 3.7400 3.2624 -0.5015 31 1 4.5480 -2.8133 1.0288 32 1 3.7874 -3.2614 -0.5168 33 1 5.3215 -2.3589 -0.5086 34 1 0.1798 -4.7703 -4.3224 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000769888856.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:39 Heat of formation + Delta-G solvation = -10.168450 kcal Electronic energy + Delta-G solvation = -21758.526884 eV Core-core repulsion = 18241.489938 eV Total energy + Delta-G solvation = -3517.036946 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -40.82273 -39.87106 -38.29475 -35.79422 -34.30976 -33.90093 -33.70655 -32.66904 -28.84343 -28.15662 -27.74146 -25.53748 -24.77262 -22.26096 -21.00727 -20.34169 -18.51200 -18.28489 -18.16173 -17.16726 -16.45100 -15.12699 -14.96432 -14.75050 -14.71556 -14.38470 -14.26827 -13.75132 -13.41208 -13.14849 -12.90680 -12.89304 -12.56242 -12.11087 -11.93565 -11.79830 -11.54767 -11.49375 -11.39718 -11.34949 -10.97670 -10.74556 -10.62920 -10.62465 -9.90130 -9.19344 -9.05415 -8.97680 -8.70846 -6.87641 -3.96331 -0.20648 0.65870 0.92993 1.15384 2.81274 3.00821 3.04739 3.16007 3.30246 3.74581 4.14811 4.29145 4.40100 4.61176 4.76258 4.89362 5.03336 5.09300 5.22455 5.29312 5.42830 5.48699 5.61842 5.65415 5.71813 5.77610 5.90132 5.96930 6.14333 6.22158 6.37593 6.40811 6.62754 6.67815 7.03725 7.72525 8.56063 8.71092 9.93633 10.35363 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.023049 B = 0.005180 C = 0.004721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.506913 B = 5404.468749 C = 5929.959385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.009 4.009 3 C -0.120 4.120 4 C -0.031 4.031 5 C -0.128 4.128 6 C -0.008 4.008 7 N -0.025 5.025 8 O -0.143 6.143 9 O -0.145 6.145 10 C 0.001 3.999 11 C -0.134 4.134 12 C -0.043 4.043 13 C 0.357 3.643 14 O -0.556 6.556 15 O -0.138 6.138 16 C -0.402 4.402 17 H 0.093 0.907 18 C 0.049 3.951 19 N -0.812 5.812 20 Si 0.945 3.055 21 H -0.268 1.268 22 H -0.274 1.274 23 H -0.260 1.260 24 H 0.088 0.912 25 H 0.083 0.917 26 H 0.074 0.926 27 H 0.149 0.851 28 H 0.086 0.914 29 H 0.067 0.933 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.097 0.903 33 H 0.069 0.931 34 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.150 10.185 2.891 10.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.009 4.009 3 C -0.138 4.138 4 C -0.033 4.033 5 C -0.184 4.184 6 C -0.089 4.089 7 N 0.471 4.529 8 O -0.349 6.349 9 O -0.350 6.350 10 C 0.000 4.000 11 C -0.190 4.190 12 C -0.045 4.045 13 C 0.210 3.790 14 O -0.459 6.459 15 O -0.038 6.038 16 C -0.481 4.481 17 H 0.111 0.889 18 C -0.166 4.166 19 N -0.444 5.444 20 Si 0.768 3.232 21 H -0.193 1.193 22 H -0.199 1.199 23 H -0.184 1.184 24 H 0.107 0.893 25 H 0.102 0.898 26 H 0.093 0.907 27 H 0.167 0.833 28 H 0.104 0.896 29 H 0.086 0.914 30 H 0.105 0.895 31 H 0.108 0.892 32 H 0.116 0.884 33 H 0.088 0.912 34 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.306 10.013 2.846 10.491 hybrid contribution 0.105 -0.788 -0.043 0.796 sum 1.411 9.225 2.802 9.744 Atomic orbital electron populations 1.20976 0.89213 1.04005 1.03959 1.20350 0.97561 0.91167 0.91809 1.20750 0.91256 0.98457 1.03362 1.19561 0.94125 0.92764 0.96817 1.20989 1.00221 0.93471 1.03724 1.19640 0.75428 0.95852 1.18005 1.50437 1.04846 0.95360 1.02256 1.96268 1.70908 1.52914 1.14813 1.96286 1.70070 1.53092 1.15506 1.19610 0.93010 0.93388 0.93999 1.21068 0.99801 0.94028 1.04132 1.18941 0.90516 0.93202 1.01815 1.19945 0.88496 0.87079 0.83525 1.90624 1.58480 1.64728 1.32074 1.80599 1.57277 1.33282 1.32689 1.20635 1.34608 0.98452 0.94419 0.88914 1.26947 0.96946 0.99673 0.92996 1.68931 1.37924 1.38788 0.98726 0.85628 0.79394 0.79190 0.78976 1.19343 1.19943 1.18351 0.89339 0.89799 0.90684 0.83342 0.89580 0.91359 0.89452 0.89184 0.88403 0.91230 0.90319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 44. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.84 9.62 36.00 0.35 -1.49 16 2 C -0.01 -0.14 5.92 -104.20 -0.62 -0.76 16 3 C -0.12 -1.58 9.34 -39.64 -0.37 -1.95 16 4 C -0.03 -0.44 5.89 -104.52 -0.62 -1.06 16 5 C -0.13 -1.37 9.76 36.00 0.35 -1.02 16 6 C -0.01 -0.14 6.20 -80.00 -0.50 -0.63 16 7 N -0.02 -0.43 2.72 33.93 0.09 -0.34 16 8 O -0.14 -2.50 19.97 -31.57 -0.63 -3.13 16 9 O -0.15 -2.59 19.86 -31.57 -0.63 -3.21 16 10 C 0.00 0.03 5.92 -104.20 -0.62 -0.59 16 11 C -0.13 -2.49 9.38 36.00 0.34 -2.15 16 12 C -0.04 -0.87 5.75 -104.98 -0.60 -1.47 16 13 C 0.36 8.75 4.21 34.57 0.15 8.90 16 14 O -0.56 -14.98 16.22 -19.20 -0.31 -15.29 16 15 O -0.14 -3.75 9.30 -1.80 -0.02 -3.77 16 16 C -0.40 -11.14 9.62 34.09 0.33 -10.81 16 17 H 0.09 2.64 6.70 -52.48 -0.35 2.29 16 18 C 0.05 1.26 5.69 -15.22 -0.09 1.17 16 19 N -0.81 -21.47 13.66 55.98 0.76 -20.71 16 20 Si 0.94 19.38 29.64 -169.99 -5.04 14.34 16 21 H -0.27 -5.33 7.11 56.52 0.40 -4.92 16 22 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 23 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 24 H 0.09 1.27 8.14 -51.92 -0.42 0.85 16 25 H 0.08 1.46 7.09 -51.93 -0.37 1.09 16 26 H 0.07 0.81 8.09 -51.93 -0.42 0.39 16 27 H 0.15 1.35 8.06 -52.49 -0.42 0.93 16 28 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.07 0.81 7.36 -51.93 -0.38 0.42 16 30 H 0.09 0.70 8.08 -51.93 -0.42 0.28 16 31 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 32 H 0.10 2.00 7.08 -51.93 -0.37 1.63 16 33 H 0.07 1.20 7.38 -51.93 -0.38 0.82 16 34 H 0.28 6.76 8.26 -40.82 -0.34 6.42 16 LS Contribution 312.48 15.07 4.71 4.71 Total: -1.00 -30.92 312.48 -6.47 -37.40 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -3.52 Total: 1.85 kcal Atomic # 6 Polarization: -9.96 SS G_CDS: -1.90 Total: -11.85 kcal Atomic # 7 Polarization: -21.90 SS G_CDS: 0.86 Total: -21.05 kcal Atomic # 8 Polarization: -23.81 SS G_CDS: -1.59 Total: -25.40 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.04 Total: 14.34 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.92 -6.47 -37.40 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769888856.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.227 kcal (2) G-P(sol) polarization free energy of solvation -30.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds