Wall clock time and date at job start Wed Apr 15 2020 11:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34636 * 117.00176 * 2 1 4 4 O 1.21501 * 120.00141 * 0.02562 * 3 2 1 5 5 N 1.34781 * 119.99997 * 180.02562 * 3 2 1 6 6 C 1.39417 * 119.99683 * 175.51277 * 5 3 2 7 7 C 1.39182 * 119.91376 * 215.73447 * 6 5 3 8 8 C 1.37612 * 120.08583 * 179.97438 * 7 6 5 9 9 C 1.39870 * 119.91199 * 0.05073 * 8 7 6 10 10 C 1.47400 * 120.08107 * 180.24984 * 9 8 7 11 11 O 1.21537 * 119.99847 * 173.43171 * 10 9 8 12 12 O 1.34778 * 119.99654 * 353.43375 * 10 9 8 13 13 C 1.34860 * 116.99360 * 179.97438 * 12 10 9 14 14 H 1.07998 * 120.00712 * 359.97438 * 13 12 10 15 15 C 1.38799 * 119.99803 * 179.97438 * 13 12 10 16 16 N 1.31427 * 119.99622 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00453 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.46862 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47220 * 119.99649 * 17 15 13 20 20 H 1.48494 * 109.47228 * 239.99927 * 17 15 13 21 21 C 1.39829 * 119.83987 * 359.97217 * 9 8 7 22 22 C 1.50696 * 120.04463 * 180.02562 * 21 9 8 23 23 C 1.37658 * 119.91433 * 0.02562 * 21 9 8 24 24 H 1.09002 * 109.47562 * 300.00079 * 1 2 3 25 25 H 1.09007 * 109.46931 * 59.99926 * 1 2 3 26 26 H 1.09008 * 109.47554 * 179.97438 * 1 2 3 27 27 H 0.96996 * 120.00064 * 355.49940 * 5 3 2 28 28 H 1.07998 * 119.95955 * 0.02758 * 7 6 5 29 29 H 1.07991 * 120.04757 * 180.02562 * 8 7 6 30 30 H 0.97001 * 120.00010 * 180.02562 * 16 15 13 31 31 H 1.09008 * 109.46883 * 83.05816 * 22 21 9 32 32 H 1.08993 * 109.47290 * 203.05532 * 22 21 9 33 33 H 1.08998 * 109.47090 * 323.06227 * 22 21 9 34 34 H 1.07999 * 119.95392 * 179.97438 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4015 2.2186 0.0005 5 7 3.4092 1.2701 -0.0005 6 6 4.0422 2.5087 -0.0950 7 6 5.2325 2.6273 -0.8066 8 6 5.8601 3.8482 -0.9025 9 6 5.3008 4.9706 -0.2829 10 6 5.9670 6.2812 -0.3879 11 8 5.4220 7.2765 0.0473 12 8 7.1805 6.3758 -0.9667 13 6 7.7340 7.6040 -1.0309 14 1 7.2059 8.4560 -0.6291 15 6 8.9823 7.7729 -1.6136 16 7 9.6252 6.7359 -2.1022 17 14 9.7494 9.4738 -1.7022 18 1 8.8302 10.4640 -1.0857 19 1 11.0408 9.4733 -0.9691 20 1 9.9866 9.8366 -3.1224 21 6 4.1052 4.8474 0.4315 22 6 3.4982 6.0537 1.1004 23 6 3.4832 3.6228 0.5231 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 3.9373 0.4592 0.0650 28 1 5.6637 1.7603 -1.2848 29 1 6.7834 3.9396 -1.4552 30 1 10.4978 6.8539 -2.5091 31 1 2.9176 6.6195 0.3718 32 1 2.8465 5.7298 1.9118 33 1 4.2916 6.6844 1.5014 34 1 2.5599 3.5268 1.0751 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000909667710.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:02 Heat of formation + Delta-G solvation = -124.691794 kcal Electronic energy + Delta-G solvation = -20955.724942 eV Core-core repulsion = 17433.721891 eV Total energy + Delta-G solvation = -3522.003051 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 3.83 seconds Orbital eigenvalues (eV) -41.04682 -39.59953 -38.41135 -36.74655 -35.48810 -34.74867 -32.34450 -31.92314 -30.05899 -27.77512 -26.90784 -25.36872 -23.72236 -21.68175 -21.45763 -20.14844 -18.96001 -17.72473 -17.45905 -17.10499 -16.76446 -16.08123 -15.27643 -14.93041 -14.58816 -14.33380 -14.21024 -14.00437 -13.56064 -13.05007 -12.97703 -12.73667 -12.38833 -12.09908 -12.02600 -11.69930 -11.53212 -11.20658 -11.07728 -10.98842 -10.66179 -10.44598 -10.39120 -10.13715 -9.82200 -8.79029 -8.60959 -8.47045 -8.04314 -6.45947 -4.08066 1.08994 1.68002 1.88758 2.53907 3.11648 3.18538 3.26043 3.50831 3.92588 3.95732 4.31326 4.59309 4.83851 4.92451 5.04034 5.14525 5.15892 5.20876 5.47810 5.49745 5.66998 5.88160 6.05775 6.12771 6.25998 6.32071 6.44177 6.56044 6.66646 6.80557 7.08281 7.15106 7.20310 7.40580 7.93064 8.03477 8.71950 9.03342 9.84247 10.71982 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.042287 B = 0.003536 C = 0.003306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.983284 B = 7916.735814 C = 8466.980297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 O -0.371 6.371 3 C 0.645 3.355 4 O -0.550 6.550 5 N -0.646 5.646 6 C 0.162 3.838 7 C -0.157 4.157 8 C -0.049 4.049 9 C -0.102 4.102 10 C 0.434 3.566 11 O -0.547 6.547 12 O -0.207 6.207 13 C -0.372 4.372 14 H 0.098 0.902 15 C 0.040 3.960 16 N -0.860 5.860 17 Si 0.944 3.056 18 H -0.265 1.265 19 H -0.276 1.276 20 H -0.276 1.276 21 C -0.016 4.016 22 C -0.115 4.115 23 C -0.134 4.134 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.104 0.896 27 H 0.417 0.583 28 H 0.130 0.870 29 H 0.148 0.852 30 H 0.270 0.730 31 H 0.074 0.926 32 H 0.051 0.949 33 H 0.099 0.901 34 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.079 -14.194 3.699 19.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 O -0.284 6.284 3 C 0.399 3.601 4 O -0.437 6.437 5 N -0.297 5.297 6 C 0.069 3.931 7 C -0.178 4.178 8 C -0.068 4.068 9 C -0.104 4.104 10 C 0.283 3.717 11 O -0.446 6.446 12 O -0.114 6.114 13 C -0.448 4.448 14 H 0.116 0.884 15 C -0.164 4.164 16 N -0.497 5.497 17 Si 0.768 3.232 18 H -0.189 1.189 19 H -0.201 1.201 20 H -0.202 1.202 21 C -0.017 4.017 22 C -0.172 4.172 23 C -0.153 4.153 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.122 0.878 27 H 0.253 0.747 28 H 0.148 0.852 29 H 0.166 0.834 30 H 0.080 0.920 31 H 0.092 0.908 32 H 0.070 0.930 33 H 0.117 0.883 34 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -12.443 -13.567 3.679 18.773 hybrid contribution 0.509 0.237 -0.168 0.586 sum -11.934 -13.330 3.511 18.232 Atomic orbital electron populations 1.23247 0.73934 1.03620 1.03039 1.86231 1.24549 1.30714 1.86954 1.18114 0.83200 0.82424 0.76389 1.91038 1.64347 1.34463 1.53822 1.41795 1.03381 1.09355 1.75169 1.17558 0.93677 0.83883 0.97985 1.20751 0.96537 0.98762 1.01706 1.21385 0.99126 0.90412 0.95829 1.19332 0.95944 0.92702 1.02447 1.20659 0.82335 0.88222 0.80495 1.90583 1.66088 1.38572 1.49309 1.83905 1.28274 1.34525 1.64691 1.21348 1.00992 0.83381 1.39115 0.88411 1.25369 0.95462 0.99781 0.95800 1.69985 1.14009 1.29853 1.35844 0.85593 0.78943 0.80319 0.78314 1.18866 1.20142 1.20151 1.19878 0.92186 0.95184 0.94470 1.21044 1.01549 0.95154 0.99410 1.20974 1.01496 0.91075 1.01805 0.91622 0.91607 0.87797 0.74651 0.85215 0.83440 0.92020 0.90781 0.93042 0.88302 0.84139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.40 10.56 101.05 1.07 1.47 16 2 O -0.37 -3.75 10.61 -40.31 -0.43 -4.18 16 3 C 0.65 8.24 8.58 54.06 0.46 8.71 16 4 O -0.55 -8.72 13.59 -19.27 -0.26 -8.98 16 5 N -0.65 -7.47 5.32 -14.26 -0.08 -7.55 16 6 C 0.16 2.36 6.28 -83.73 -0.53 1.84 16 7 C -0.16 -2.28 9.94 -39.46 -0.39 -2.68 16 8 C -0.05 -0.88 9.60 -39.20 -0.38 -1.26 16 9 C -0.10 -2.14 5.88 -104.96 -0.62 -2.75 16 10 C 0.43 11.06 7.75 34.46 0.27 11.32 16 11 O -0.55 -14.58 12.59 -19.29 -0.24 -14.82 16 12 O -0.21 -5.90 9.00 -21.78 -0.20 -6.10 16 13 C -0.37 -10.90 9.65 30.94 0.30 -10.60 16 14 H 0.10 2.88 6.86 -52.49 -0.36 2.52 16 15 C 0.04 1.12 5.49 -17.52 -0.10 1.02 16 16 N -0.86 -24.70 13.67 55.49 0.76 -23.94 16 17 Si 0.94 21.06 29.55 -169.99 -5.02 16.04 16 18 H -0.26 -5.83 7.11 56.52 0.40 -5.43 16 19 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 20 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 21 C -0.02 -0.30 5.91 -104.24 -0.62 -0.92 16 22 C -0.12 -2.06 8.70 36.00 0.31 -1.75 16 23 C -0.13 -2.20 8.28 -39.46 -0.33 -2.53 16 24 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.10 0.40 8.14 -51.92 -0.42 -0.02 16 27 H 0.42 3.38 8.93 -40.82 -0.36 3.01 16 28 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 29 H 0.15 2.78 7.62 -52.49 -0.40 2.38 16 30 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 31 H 0.07 1.33 8.14 -51.92 -0.42 0.91 16 32 H 0.05 0.76 8.03 -51.93 -0.42 0.35 16 33 H 0.10 1.98 5.90 -51.93 -0.31 1.68 16 34 H 0.14 2.28 6.25 -52.49 -0.33 1.95 16 LS Contribution 304.81 15.07 4.59 4.59 Total: -1.00 -34.11 304.81 -4.84 -38.95 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -3.42 Total: 4.10 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: -0.54 Total: 1.87 kcal Atomic # 7 Polarization: -32.17 SS G_CDS: 0.68 Total: -31.49 kcal Atomic # 8 Polarization: -32.94 SS G_CDS: -1.13 Total: -34.07 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -34.11 -4.84 -38.95 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000909667710.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.737 kcal (2) G-P(sol) polarization free energy of solvation -34.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.83 seconds