Wall clock time and date at job start Wed Apr 15 2020 11:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34636 * 117.00176 * 2 1 4 4 O 1.21501 * 120.00141 * 0.02562 * 3 2 1 5 5 N 1.34781 * 119.99997 * 180.02562 * 3 2 1 6 6 C 1.39417 * 119.99683 * 175.51277 * 5 3 2 7 7 C 1.39182 * 119.91376 * 215.73447 * 6 5 3 8 8 C 1.37612 * 120.08583 * 179.97438 * 7 6 5 9 9 C 1.39870 * 119.91199 * 0.05073 * 8 7 6 10 10 C 1.47400 * 120.08107 * 180.24984 * 9 8 7 11 11 O 1.21537 * 119.99847 * 173.43171 * 10 9 8 12 12 O 1.34778 * 119.99654 * 353.43375 * 10 9 8 13 13 C 1.34860 * 116.99360 * 179.97438 * 12 10 9 14 14 H 1.07998 * 120.00712 * 359.97438 * 13 12 10 15 15 C 1.38799 * 119.99803 * 179.97438 * 13 12 10 16 16 N 1.31427 * 119.99622 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00453 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.46862 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47220 * 119.99649 * 17 15 13 20 20 H 1.48494 * 109.47228 * 239.99927 * 17 15 13 21 21 C 1.39829 * 119.83987 * 359.97217 * 9 8 7 22 22 C 1.50696 * 120.04463 * 180.02562 * 21 9 8 23 23 C 1.37658 * 119.91433 * 0.02562 * 21 9 8 24 24 H 1.09002 * 109.47562 * 300.00079 * 1 2 3 25 25 H 1.09007 * 109.46931 * 59.99926 * 1 2 3 26 26 H 1.09008 * 109.47554 * 179.97438 * 1 2 3 27 27 H 0.96996 * 120.00064 * 355.49940 * 5 3 2 28 28 H 1.07998 * 119.95955 * 0.02758 * 7 6 5 29 29 H 1.07991 * 120.04757 * 180.02562 * 8 7 6 30 30 H 0.97001 * 120.00010 * 180.02562 * 16 15 13 31 31 H 1.09008 * 109.46883 * 83.05816 * 22 21 9 32 32 H 1.08993 * 109.47290 * 203.05532 * 22 21 9 33 33 H 1.08998 * 109.47090 * 323.06227 * 22 21 9 34 34 H 1.07999 * 119.95392 * 179.97438 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4015 2.2186 0.0005 5 7 3.4092 1.2701 -0.0005 6 6 4.0422 2.5087 -0.0950 7 6 5.2325 2.6273 -0.8066 8 6 5.8601 3.8482 -0.9025 9 6 5.3008 4.9706 -0.2829 10 6 5.9670 6.2812 -0.3879 11 8 5.4220 7.2765 0.0473 12 8 7.1805 6.3758 -0.9667 13 6 7.7340 7.6040 -1.0309 14 1 7.2059 8.4560 -0.6291 15 6 8.9823 7.7729 -1.6136 16 7 9.6252 6.7359 -2.1022 17 14 9.7494 9.4738 -1.7022 18 1 8.8302 10.4640 -1.0857 19 1 11.0408 9.4733 -0.9691 20 1 9.9866 9.8366 -3.1224 21 6 4.1052 4.8474 0.4315 22 6 3.4982 6.0537 1.1004 23 6 3.4832 3.6228 0.5231 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 3.9373 0.4592 0.0650 28 1 5.6637 1.7603 -1.2848 29 1 6.7834 3.9396 -1.4552 30 1 10.4978 6.8539 -2.5091 31 1 2.9176 6.6195 0.3718 32 1 2.8465 5.7298 1.9118 33 1 4.2916 6.6844 1.5014 34 1 2.5599 3.5268 1.0751 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000909667710.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:59 Heat of formation + Delta-G solvation = -148.228894 kcal Electronic energy + Delta-G solvation = -20956.745587 eV Core-core repulsion = 17433.721891 eV Total energy + Delta-G solvation = -3523.023696 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.12308 -41.25685 -39.94164 -37.88603 -37.21716 -36.14694 -34.35073 -33.43685 -31.41266 -28.57813 -28.34695 -27.32345 -25.10529 -23.18383 -22.63745 -21.69490 -20.04717 -19.76482 -18.90999 -18.50319 -17.71544 -17.21527 -17.04671 -16.67032 -16.37767 -15.91897 -15.43512 -15.15817 -14.71404 -14.61004 -14.41504 -14.13375 -13.78855 -13.50448 -13.38342 -13.17312 -13.01372 -12.93498 -12.37509 -12.35179 -12.15417 -11.96454 -11.87153 -11.78839 -11.40908 -10.75226 -10.67592 -9.84458 -9.37582 -8.54884 -6.30671 -0.35139 0.32083 0.94889 1.33316 1.35306 1.48434 1.53538 1.86907 2.11557 2.69753 2.75749 3.04006 3.08173 3.75297 3.83468 4.13316 4.21343 4.32766 4.36532 4.38049 4.54972 4.66886 4.76834 4.78184 4.88556 5.05994 5.07688 5.16569 5.21289 5.27141 5.32477 5.62112 5.81313 5.86416 6.15851 6.65604 6.90403 7.08292 7.76228 8.65999 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.042287 B = 0.003536 C = 0.003306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.983284 B = 7916.735814 C = 8466.980297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 O -0.362 6.362 3 C 0.646 3.354 4 O -0.582 6.582 5 N -0.632 5.632 6 C 0.186 3.814 7 C -0.137 4.137 8 C -0.050 4.050 9 C -0.141 4.141 10 C 0.433 3.567 11 O -0.568 6.568 12 O -0.234 6.234 13 C -0.416 4.416 14 H 0.082 0.918 15 C -0.003 4.003 16 N -0.897 5.897 17 Si 1.018 2.982 18 H -0.266 1.266 19 H -0.259 1.259 20 H -0.260 1.260 21 C -0.020 4.020 22 C -0.112 4.112 23 C -0.135 4.135 24 H 0.065 0.935 25 H 0.061 0.939 26 H 0.141 0.859 27 H 0.437 0.563 28 H 0.175 0.825 29 H 0.135 0.865 30 H 0.280 0.720 31 H 0.067 0.933 32 H 0.083 0.917 33 H 0.070 0.930 34 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.814 -16.491 3.693 21.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 O -0.276 6.276 3 C 0.401 3.599 4 O -0.472 6.472 5 N -0.285 5.285 6 C 0.091 3.909 7 C -0.157 4.157 8 C -0.069 4.069 9 C -0.143 4.143 10 C 0.283 3.717 11 O -0.467 6.467 12 O -0.142 6.142 13 C -0.492 4.492 14 H 0.100 0.900 15 C -0.204 4.204 16 N -0.534 5.534 17 Si 0.837 3.163 18 H -0.190 1.190 19 H -0.183 1.183 20 H -0.184 1.184 21 C -0.021 4.021 22 C -0.168 4.168 23 C -0.155 4.155 24 H 0.083 0.917 25 H 0.080 0.920 26 H 0.159 0.841 27 H 0.278 0.722 28 H 0.192 0.808 29 H 0.152 0.848 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.101 0.899 33 H 0.089 0.911 34 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -13.195 -15.939 3.681 21.017 hybrid contribution 0.495 0.703 -0.110 0.867 sum -12.699 -15.236 3.570 20.153 Atomic orbital electron populations 1.23609 0.72123 1.06035 1.02868 1.86264 1.26176 1.28824 1.86297 1.18242 0.83243 0.82760 0.75668 1.91031 1.65122 1.35841 1.55176 1.41634 1.03431 1.08997 1.74421 1.17573 0.93057 0.84547 0.95690 1.21009 0.95773 0.98500 1.00449 1.21336 0.98899 0.91147 0.95540 1.19230 0.97596 0.91273 1.06166 1.21631 0.81424 0.89997 0.78598 1.90551 1.66320 1.40062 1.49765 1.83924 1.29723 1.34334 1.66230 1.21503 1.02421 0.83537 1.41748 0.90020 1.26527 0.95033 1.04437 0.94357 1.70059 1.14762 1.32208 1.36409 0.84565 0.78112 0.74457 0.79201 1.18988 1.18328 1.18415 1.19952 0.91562 0.96330 0.94239 1.20957 1.00997 0.94720 1.00100 1.21040 1.01590 0.90751 1.02103 0.91665 0.91998 0.84104 0.72202 0.80795 0.84758 0.91089 0.91478 0.89852 0.91110 0.83413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.52 10.56 113.37 1.20 1.72 16 2 O -0.36 -6.06 10.61 -55.45 -0.59 -6.65 16 3 C 0.65 14.45 8.58 129.79 1.11 15.56 16 4 O -0.58 -17.10 13.59 19.84 0.27 -16.83 16 5 N -0.63 -12.17 5.32 -429.44 -2.28 -14.45 16 6 C 0.19 4.87 6.28 38.38 0.24 5.11 16 7 C -0.14 -3.60 9.94 22.35 0.22 -3.37 16 8 C -0.05 -1.82 9.60 22.52 0.22 -1.60 16 9 C -0.14 -6.05 5.88 -20.08 -0.12 -6.17 16 10 C 0.43 23.39 7.75 70.23 0.54 23.94 16 11 O -0.57 -32.19 12.59 19.72 0.25 -31.94 16 12 O -0.23 -14.13 9.00 10.81 0.10 -14.04 16 13 C -0.42 -25.68 9.65 67.95 0.66 -25.02 16 14 H 0.08 5.13 6.86 -2.91 -0.02 5.11 16 15 C 0.00 -0.17 5.49 84.89 0.47 0.30 16 16 N -0.90 -52.71 13.67 21.63 0.30 -52.41 16 17 Si 1.02 43.73 29.55 68.60 2.03 45.76 16 18 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 19 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 20 H -0.26 -10.41 7.11 99.48 0.71 -9.71 16 21 C -0.02 -0.74 5.91 -19.62 -0.12 -0.85 16 22 C -0.11 -4.07 8.70 71.23 0.62 -3.45 16 23 C -0.13 -4.22 8.28 22.35 0.19 -4.03 16 24 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 25 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 26 H 0.14 0.52 8.14 -2.38 -0.02 0.50 16 27 H 0.44 5.03 8.93 -92.71 -0.83 4.20 16 28 H 0.17 3.04 8.06 -2.91 -0.02 3.02 16 29 H 0.13 5.21 7.62 -2.92 -0.02 5.19 16 30 H 0.28 14.80 8.31 -92.71 -0.77 14.03 16 31 H 0.07 2.50 8.14 -2.38 -0.02 2.48 16 32 H 0.08 2.43 8.03 -2.39 -0.02 2.41 16 33 H 0.07 2.99 5.90 -2.39 -0.01 2.97 16 34 H 0.15 4.49 6.25 -2.91 -0.02 4.47 16 Total: -1.00 -78.17 304.81 5.62 -72.55 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: 0.33 Total: 15.89 kcal Atomic # 6 Polarization: -3.10 SS G_CDS: 5.23 Total: 2.12 kcal Atomic # 7 Polarization: -64.87 SS G_CDS: -1.99 Total: -66.86 kcal Atomic # 8 Polarization: -69.48 SS G_CDS: 0.03 Total: -69.46 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -78.17 5.62 -72.55 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000909667710.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.684 kcal (2) G-P(sol) polarization free energy of solvation -78.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds