Wall clock time and date at job start Wed Apr 15 2020 11:43:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38357 * 120.25022 * 2 1 4 4 N 1.31870 * 121.21107 * 180.02562 * 3 2 1 5 5 C 1.32370 * 121.78807 * 0.02562 * 4 3 2 6 6 N 1.38605 * 119.81671 * 179.97438 * 5 4 3 7 7 C 1.38431 * 120.00200 * 355.68218 * 6 5 4 8 8 C 1.38944 * 120.00090 * 58.12892 * 7 6 5 9 9 H 1.08004 * 120.00100 * 203.78394 * 8 7 6 10 10 C 1.40865 * 120.00382 * 23.77425 * 8 7 6 11 11 N 1.30321 * 119.99413 * 7.23175 * 10 8 7 12 12 Si 1.86797 * 120.00162 * 187.22436 * 10 8 7 13 13 H 1.48498 * 109.47153 * 0.02562 * 12 10 8 14 14 H 1.48499 * 109.46940 * 120.00553 * 12 10 8 15 15 H 1.48501 * 109.47263 * 240.00303 * 12 10 8 16 16 C 1.41133 * 119.99815 * 238.12755 * 7 6 5 17 17 C 1.43198 * 120.00227 * 185.45310 * 16 7 6 18 18 N 8.05851 * 149.90463 * 342.69026 * 2 1 3 19 19 C 1.43203 * 119.99801 * 5.45042 * 16 7 6 20 20 N 6.67685 * 153.11731 * 268.61164 * 2 1 3 21 21 C 1.40511 * 120.35759 * 359.97438 * 5 4 3 22 22 C 1.43204 * 120.60888 * 180.02562 * 21 5 4 23 23 N 4.80320 * 136.35576 * 179.97438 * 2 1 3 24 24 C 1.38377 * 120.24739 * 179.72755 * 2 1 3 25 25 H 1.08998 * 109.46942 * 89.99715 * 1 2 3 26 26 H 1.08998 * 109.46674 * 209.99867 * 1 2 3 27 27 H 1.08994 * 109.46659 * 329.99941 * 1 2 3 28 28 H 1.07996 * 119.39132 * 0.02562 * 3 2 1 29 29 H 0.96997 * 119.99289 * 175.67799 * 6 5 4 30 30 H 0.96999 * 120.00037 * 184.99247 * 11 10 8 31 31 H 1.07995 * 120.82172 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2041 1.1952 0.0000 4 7 3.5226 1.2173 -0.0005 5 6 4.2387 0.1040 -0.0015 6 7 5.6229 0.1749 -0.0026 7 6 6.2530 1.4042 -0.0928 8 6 6.0003 2.3858 0.8576 9 1 6.1572 3.4263 0.6142 10 6 5.5393 2.0240 2.1386 11 7 5.4839 0.7676 2.4802 12 14 5.0078 3.3450 3.3475 13 1 5.1653 4.6820 2.7207 14 1 3.5843 3.1357 3.7151 15 1 5.8506 3.2675 4.5677 16 6 7.1520 1.6604 -1.1501 17 6 7.8918 2.8861 -1.1798 18 7 8.4792 3.8579 -1.2023 19 6 7.3244 0.6946 -2.1933 20 7 7.4624 -0.0731 -3.0182 21 6 3.6031 -1.1492 -0.0016 22 6 4.3725 -2.3570 -0.0021 23 7 4.9828 -3.3151 0.0015 24 6 2.2041 -1.1954 0.0057 25 1 -0.3633 0.0001 -1.0277 26 1 -0.3632 -0.8900 0.5138 27 1 -0.3632 0.8900 0.5138 28 1 1.6582 2.1271 0.0004 29 1 6.1500 -0.6369 0.0600 30 1 5.0993 0.5135 3.3337 31 1 1.6817 -2.1405 0.0106 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158211523.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:15 Heat of formation + Delta-G solvation = 119.561434 kcal Electronic energy + Delta-G solvation = -20187.817735 eV Core-core repulsion = 17048.300721 eV Total energy + Delta-G solvation = -3139.517014 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.081 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.26383 -37.44096 -36.26285 -35.34478 -34.73370 -33.91105 -32.73623 -31.88653 -29.96067 -27.14350 -26.19909 -24.37787 -22.62045 -21.19475 -19.10769 -18.33423 -17.45249 -17.36340 -16.34101 -16.04025 -15.04271 -14.53089 -14.15122 -13.76238 -13.41393 -13.22092 -12.86181 -12.84994 -12.64979 -12.55339 -12.51580 -12.36323 -12.28370 -11.80670 -11.69380 -11.64219 -11.58182 -11.49548 -11.01616 -10.92461 -10.71222 -10.17045 -9.94261 -9.44930 -9.10287 -8.26571 -7.80514 -7.02922 -5.41909 1.03858 1.59206 2.21266 2.70847 2.79813 2.85189 2.95391 3.34749 3.40846 3.58071 3.87448 4.06186 4.17604 4.23862 4.31159 4.34602 4.86395 4.96738 5.16895 5.18971 5.28172 5.37383 5.60487 5.66499 5.86646 5.96157 6.06821 6.20663 6.34689 6.37388 6.69313 7.05126 7.24482 7.50880 7.72317 7.79896 7.91516 8.19702 8.61441 8.95285 9.13596 9.20016 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.012053 B = 0.008492 C = 0.006254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2322.590085 B = 3296.523150 C = 4475.930121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.223 4.223 3 C 0.183 3.817 4 N -0.505 5.505 5 C 0.484 3.516 6 N -0.625 5.625 7 C 0.376 3.624 8 C -0.340 4.340 9 H 0.112 0.888 10 C 0.081 3.919 11 N -0.733 5.733 12 Si 0.926 3.074 13 H -0.247 1.247 14 H -0.261 1.261 15 H -0.266 1.266 16 C -0.310 4.310 17 C 0.327 3.673 18 N -0.533 5.533 19 C 0.306 3.694 20 N -0.533 5.533 21 C -0.161 4.161 22 C 0.269 3.731 23 N -0.435 5.435 24 C 0.014 3.986 25 H 0.063 0.937 26 H 0.060 0.940 27 H 0.064 0.936 28 H 0.157 0.843 29 H 0.409 0.591 30 H 0.301 0.699 31 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.038 -0.497 5.514 15.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.228 4.228 3 C 0.020 3.980 4 N -0.219 5.219 5 C 0.244 3.756 6 N -0.245 5.245 7 C 0.272 3.728 8 C -0.367 4.367 9 H 0.130 0.870 10 C -0.150 4.150 11 N -0.352 5.352 12 Si 0.748 3.252 13 H -0.169 1.169 14 H -0.186 1.186 15 H -0.191 1.191 16 C -0.328 4.328 17 C 0.020 3.980 18 N -0.215 5.215 19 C -0.001 4.001 20 N -0.215 5.215 21 C -0.173 4.173 22 C -0.046 4.046 23 N -0.111 5.111 24 C -0.014 4.014 25 H 0.082 0.918 26 H 0.079 0.921 27 H 0.083 0.917 28 H 0.174 0.826 29 H 0.247 0.753 30 H 0.113 0.887 31 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -11.360 -0.928 4.400 12.218 hybrid contribution -1.001 -0.510 1.047 1.536 sum -12.361 -1.438 5.447 13.584 Atomic orbital electron populations 1.20502 0.90400 1.02374 1.01844 1.20391 0.97202 0.93493 1.11725 1.22655 0.88848 0.97354 0.89173 1.67563 1.07349 1.27900 1.19118 1.17894 0.84991 0.87093 0.85579 1.41543 1.01754 1.08682 1.72551 1.16692 0.85714 0.82040 0.88306 1.20165 1.26930 0.96633 0.93015 0.87018 1.26488 0.91481 0.97179 0.99819 1.69453 1.24323 1.18666 1.22782 0.85885 0.79425 0.81103 0.78818 1.16940 1.18588 1.19070 1.12842 1.21678 0.94567 1.03757 1.24588 0.90733 0.91194 0.91534 1.81044 1.15619 1.13320 1.11501 1.25233 0.91271 0.92067 0.91542 1.81050 1.14490 1.12746 1.13227 1.16177 0.92512 0.86825 1.21762 1.25379 0.93531 0.92786 0.92884 1.81213 1.07979 1.10897 1.11049 1.21084 0.90650 0.98517 0.91191 0.91793 0.92109 0.91705 0.82599 0.75309 0.88701 0.84837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.73 10.03 36.01 0.36 -0.37 16 2 C -0.22 -2.51 5.89 -104.52 -0.62 -3.13 16 3 C 0.18 2.38 10.84 -17.49 -0.19 2.19 16 4 N -0.51 -8.48 8.26 -12.13 -0.10 -8.58 16 5 C 0.48 8.54 6.03 -154.91 -0.93 7.60 16 6 N -0.63 -12.14 3.26 -9.53 -0.03 -12.17 16 7 C 0.38 7.80 5.56 -83.52 -0.46 7.33 16 8 C -0.34 -6.85 7.47 -38.33 -0.29 -7.13 16 9 H 0.11 2.30 7.19 -52.48 -0.38 1.92 16 10 C 0.08 1.49 4.69 -17.20 -0.08 1.41 16 11 N -0.73 -13.65 11.03 55.60 0.61 -13.03 16 12 Si 0.93 14.50 29.58 -169.99 -5.03 9.48 16 13 H -0.25 -3.96 7.11 56.52 0.40 -3.56 16 14 H -0.26 -3.96 7.11 56.52 0.40 -3.56 16 15 H -0.27 -4.22 7.11 56.52 0.40 -3.81 16 16 C -0.31 -6.84 5.88 -104.95 -0.62 -7.46 16 17 C 0.33 7.52 14.00 -22.48 -0.31 7.20 16 18 N -0.53 -12.67 18.54 41.83 0.78 -11.89 16 19 C 0.31 7.05 14.82 -22.50 -0.33 6.72 16 20 N -0.53 -12.84 18.53 41.81 0.77 -12.07 16 21 C -0.16 -2.53 5.77 -106.46 -0.61 -3.14 16 22 C 0.27 4.59 14.13 -22.47 -0.32 4.28 16 23 N -0.43 -8.10 18.54 41.84 0.78 -7.33 16 24 C 0.01 0.17 9.57 -38.88 -0.37 -0.20 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.42 8.09 -51.93 -0.42 0.00 16 27 H 0.06 0.43 8.09 -51.93 -0.42 0.01 16 28 H 0.16 1.55 8.06 -52.49 -0.42 1.12 16 29 H 0.41 8.05 7.67 -40.82 -0.31 7.74 16 30 H 0.30 5.12 8.29 -40.82 -0.34 4.78 16 31 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 307.32 15.07 4.63 4.63 Total: -1.00 -25.82 307.32 -4.30 -30.12 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -1.93 Total: 5.55 kcal Atomic # 6 Polarization: 20.08 SS G_CDS: -4.78 Total: 15.30 kcal Atomic # 7 Polarization: -67.88 SS G_CDS: 2.81 Total: -65.08 kcal Atomic # 14 Polarization: 14.50 SS G_CDS: -5.03 Total: 9.48 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -25.82 -4.30 -30.12 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158211523.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.684 kcal (2) G-P(sol) polarization free energy of solvation -25.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds