Wall clock time and date at job start Wed Apr 15 2020 11:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38357 * 120.25022 * 2 1 4 4 N 1.31870 * 121.21107 * 180.02562 * 3 2 1 5 5 C 1.32370 * 121.78807 * 0.02562 * 4 3 2 6 6 N 1.38605 * 119.81671 * 179.97438 * 5 4 3 7 7 C 1.38431 * 120.00200 * 355.68218 * 6 5 4 8 8 C 1.38944 * 120.00090 * 58.12892 * 7 6 5 9 9 H 1.08004 * 120.00100 * 203.78394 * 8 7 6 10 10 C 1.40865 * 120.00382 * 23.77425 * 8 7 6 11 11 N 1.30321 * 119.99413 * 7.23175 * 10 8 7 12 12 Si 1.86797 * 120.00162 * 187.22436 * 10 8 7 13 13 H 1.48498 * 109.47153 * 0.02562 * 12 10 8 14 14 H 1.48499 * 109.46940 * 120.00553 * 12 10 8 15 15 H 1.48501 * 109.47263 * 240.00303 * 12 10 8 16 16 C 1.41133 * 119.99815 * 238.12755 * 7 6 5 17 17 C 1.43198 * 120.00227 * 185.45310 * 16 7 6 18 18 N 8.05851 * 149.90463 * 342.69026 * 2 1 3 19 19 C 1.43203 * 119.99801 * 5.45042 * 16 7 6 20 20 N 6.67685 * 153.11731 * 268.61164 * 2 1 3 21 21 C 1.40511 * 120.35759 * 359.97438 * 5 4 3 22 22 C 1.43204 * 120.60888 * 180.02562 * 21 5 4 23 23 N 4.80320 * 136.35576 * 179.97438 * 2 1 3 24 24 C 1.38377 * 120.24739 * 179.72755 * 2 1 3 25 25 H 1.08998 * 109.46942 * 89.99715 * 1 2 3 26 26 H 1.08998 * 109.46674 * 209.99867 * 1 2 3 27 27 H 1.08994 * 109.46659 * 329.99941 * 1 2 3 28 28 H 1.07996 * 119.39132 * 0.02562 * 3 2 1 29 29 H 0.96997 * 119.99289 * 175.67799 * 6 5 4 30 30 H 0.96999 * 120.00037 * 184.99247 * 11 10 8 31 31 H 1.07995 * 120.82172 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2041 1.1952 0.0000 4 7 3.5226 1.2173 -0.0005 5 6 4.2387 0.1040 -0.0015 6 7 5.6229 0.1749 -0.0026 7 6 6.2530 1.4042 -0.0928 8 6 6.0003 2.3858 0.8576 9 1 6.1572 3.4263 0.6142 10 6 5.5393 2.0240 2.1386 11 7 5.4839 0.7676 2.4802 12 14 5.0078 3.3450 3.3475 13 1 5.1653 4.6820 2.7207 14 1 3.5843 3.1357 3.7151 15 1 5.8506 3.2675 4.5677 16 6 7.1520 1.6604 -1.1501 17 6 7.8918 2.8861 -1.1798 18 7 8.4792 3.8579 -1.2023 19 6 7.3244 0.6946 -2.1933 20 7 7.4624 -0.0731 -3.0182 21 6 3.6031 -1.1492 -0.0016 22 6 4.3725 -2.3570 -0.0021 23 7 4.9828 -3.3151 0.0015 24 6 2.2041 -1.1954 0.0057 25 1 -0.3633 0.0001 -1.0277 26 1 -0.3632 -0.8900 0.5138 27 1 -0.3632 0.8900 0.5138 28 1 1.6582 2.1271 0.0004 29 1 6.1500 -0.6369 0.0600 30 1 5.0993 0.5135 3.3337 31 1 1.6817 -2.1405 0.0106 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158211523.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:14 Heat of formation + Delta-G solvation = 107.146503 kcal Electronic energy + Delta-G solvation = -20188.356087 eV Core-core repulsion = 17048.300721 eV Total energy + Delta-G solvation = -3140.055366 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.081 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.44276 -38.88124 -37.61467 -37.04396 -36.55206 -35.29037 -33.89251 -33.16642 -31.29305 -28.76451 -27.15840 -25.49549 -23.89241 -22.58673 -20.69440 -19.58723 -18.99686 -18.57477 -17.77358 -17.38592 -16.33695 -15.71427 -15.28259 -15.11109 -14.64138 -14.56941 -14.39180 -14.26481 -13.93647 -13.88526 -13.78727 -13.63977 -13.46249 -13.41201 -13.13364 -13.12159 -13.03807 -12.72860 -12.63461 -12.47413 -12.00539 -11.54643 -11.22513 -10.58944 -10.23563 -9.77636 -9.17958 -8.38121 -7.08182 -0.10547 0.40209 0.87124 1.41498 1.57122 1.58021 1.62713 2.03656 2.07283 2.12749 2.19304 2.22462 2.56533 2.73854 2.96745 3.12848 3.42109 3.73835 3.87528 4.04050 4.21776 4.31281 4.49090 4.61353 4.73027 5.00121 5.03003 5.12790 5.34608 5.43899 5.48116 5.64345 5.87000 6.01356 6.21273 6.45776 6.49281 6.72118 7.17033 7.32241 7.40190 7.76631 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.012053 B = 0.008492 C = 0.006254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2322.590085 B = 3296.523150 C = 4475.930121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.201 4.201 3 C 0.176 3.824 4 N -0.533 5.533 5 C 0.463 3.537 6 N -0.637 5.637 7 C 0.370 3.630 8 C -0.333 4.333 9 H 0.104 0.896 10 C 0.058 3.942 11 N -0.735 5.735 12 Si 0.980 3.020 13 H -0.254 1.254 14 H -0.246 1.246 15 H -0.266 1.266 16 C -0.329 4.329 17 C 0.332 3.668 18 N -0.556 5.556 19 C 0.314 3.686 20 N -0.562 5.562 21 C -0.175 4.175 22 C 0.283 3.717 23 N -0.472 5.472 24 C 0.017 3.983 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.081 0.919 28 H 0.188 0.812 29 H 0.402 0.598 30 H 0.311 0.689 31 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.259 -0.046 7.046 18.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.205 4.205 3 C 0.013 3.987 4 N -0.248 5.248 5 C 0.225 3.775 6 N -0.257 5.257 7 C 0.266 3.734 8 C -0.360 4.360 9 H 0.122 0.878 10 C -0.172 4.172 11 N -0.354 5.354 12 Si 0.799 3.201 13 H -0.178 1.178 14 H -0.169 1.169 15 H -0.191 1.191 16 C -0.349 4.349 17 C 0.026 3.974 18 N -0.240 5.240 19 C 0.009 3.991 20 N -0.246 5.246 21 C -0.186 4.186 22 C -0.030 4.030 23 N -0.150 5.150 24 C -0.011 4.011 25 H 0.095 0.905 26 H 0.094 0.906 27 H 0.100 0.900 28 H 0.205 0.795 29 H 0.238 0.762 30 H 0.124 0.876 31 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -14.632 -0.501 5.923 15.793 hybrid contribution -0.211 -0.643 0.685 0.963 sum -14.843 -1.144 6.608 16.288 Atomic orbital electron populations 1.20611 0.87203 1.04020 1.03152 1.20817 0.99214 0.92264 1.08237 1.23302 0.87799 0.99489 0.88065 1.67533 1.09198 1.27947 1.20075 1.18034 0.84325 0.88107 0.87004 1.41454 1.02608 1.07595 1.74079 1.16684 0.85789 0.83014 0.87926 1.20313 1.25898 0.96156 0.93668 0.87791 1.27032 0.91316 0.98704 1.00177 1.69455 1.22936 1.19627 1.23381 0.85106 0.79803 0.78454 0.76728 1.17753 1.16926 1.19087 1.12958 1.23019 0.94358 1.04529 1.24747 0.90425 0.91213 0.91048 1.81021 1.16613 1.14023 1.12303 1.25395 0.90644 0.91826 0.91284 1.81026 1.15758 1.13644 1.14193 1.16354 0.93811 0.85458 1.23008 1.25663 0.92865 0.92668 0.91850 1.81210 1.08901 1.12236 1.12605 1.21490 0.89200 1.00463 0.89939 0.90496 0.90644 0.90006 0.79524 0.76181 0.87626 0.81921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.96 10.03 71.24 0.71 -0.25 16 2 C -0.20 -3.74 5.89 -19.80 -0.12 -3.85 16 3 C 0.18 3.99 10.84 84.72 0.92 4.91 16 4 N -0.53 -17.09 8.26 -192.30 -1.59 -18.68 16 5 C 0.46 16.06 6.03 133.55 0.81 16.86 16 6 N -0.64 -25.06 3.26 -184.05 -0.60 -25.66 16 7 C 0.37 15.58 5.56 38.98 0.22 15.80 16 8 C -0.33 -13.36 7.47 23.08 0.17 -13.18 16 9 H 0.10 4.28 7.19 -2.91 -0.02 4.26 16 10 C 0.06 2.06 4.69 85.56 0.40 2.46 16 11 N -0.74 -26.49 11.03 21.98 0.24 -26.25 16 12 Si 0.98 27.83 29.58 68.60 2.03 29.86 16 13 H -0.25 -7.53 7.11 99.48 0.71 -6.82 16 14 H -0.25 -6.36 7.11 99.48 0.71 -5.66 16 15 H -0.27 -7.58 7.11 99.48 0.71 -6.88 16 16 C -0.33 -14.95 5.88 -20.08 -0.12 -15.07 16 17 C 0.33 15.60 14.00 88.33 1.24 16.84 16 18 N -0.56 -26.90 18.54 19.00 0.35 -26.55 16 19 C 0.31 14.94 14.82 88.34 1.31 16.25 16 20 N -0.56 -27.92 18.53 19.00 0.35 -27.57 16 21 C -0.17 -5.29 5.77 -21.06 -0.12 -5.42 16 22 C 0.28 9.65 14.13 88.33 1.25 10.90 16 23 N -0.47 -17.81 18.54 19.01 0.35 -17.45 16 24 C 0.02 0.37 9.57 22.72 0.22 0.58 16 25 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.07 0.63 8.09 -2.39 -0.02 0.62 16 27 H 0.08 0.64 8.09 -2.39 -0.02 0.62 16 28 H 0.19 2.94 8.06 -2.91 -0.02 2.91 16 29 H 0.40 16.38 7.67 -92.71 -0.71 15.67 16 30 H 0.31 10.01 8.29 -92.71 -0.77 9.24 16 31 H 0.16 2.55 8.06 -2.91 -0.02 2.53 16 Total: -1.00 -56.83 307.32 8.54 -48.29 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: 0.52 Total: 17.17 kcal Atomic # 6 Polarization: 39.95 SS G_CDS: 6.88 Total: 46.83 kcal Atomic # 7 Polarization: -141.27 SS G_CDS: -0.89 Total: -142.16 kcal Atomic # 14 Polarization: 27.83 SS G_CDS: 2.03 Total: 29.86 kcal Total: -56.83 8.54 -48.29 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158211523.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.440 kcal (2) G-P(sol) polarization free energy of solvation -56.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds