Wall clock time and date at job start Wed Apr 15 2020 11:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38685 * 119.43864 * 2 1 4 4 C 1.38349 * 119.48878 * 179.74834 * 3 2 1 5 5 C 1.39413 * 118.43649 * 0.51419 * 4 3 2 6 6 N 1.39140 * 120.55917 * 179.73143 * 5 4 3 7 7 C 1.38345 * 120.00085 * 354.16664 * 6 5 4 8 8 C 1.38971 * 119.99727 * 300.45401 * 7 6 5 9 9 H 1.08002 * 120.00076 * 152.13329 * 8 7 6 10 10 C 1.40851 * 120.00454 * 332.12859 * 8 7 6 11 11 N 1.30330 * 119.99303 * 2.86433 * 10 8 7 12 12 Si 1.86799 * 120.00010 * 182.86267 * 10 8 7 13 13 H 1.48496 * 109.47238 * 60.00265 * 12 10 8 14 14 H 1.48498 * 109.46673 * 180.02562 * 12 10 8 15 15 H 1.48498 * 109.47276 * 299.99708 * 12 10 8 16 16 C 1.41148 * 119.99783 * 120.45378 * 7 6 5 17 17 C 1.43202 * 119.99813 * 174.76246 * 16 7 6 18 18 N 8.09929 * 153.80468 * 9.58858 * 2 1 3 19 19 C 1.43202 * 120.00502 * 354.76178 * 16 7 6 20 20 N 6.64255 * 152.54619 * 88.36528 * 2 1 3 21 21 C 1.40197 * 118.87660 * 359.74850 * 5 4 3 22 22 C 1.43206 * 119.80620 * 180.02562 * 21 5 4 23 23 N 4.69735 * 132.31258 * 180.27827 * 2 1 3 24 24 N 1.31455 * 119.44519 * 180.27147 * 2 1 3 25 25 H 1.08999 * 109.47443 * 269.72646 * 1 2 3 26 26 H 1.09001 * 109.46887 * 149.72763 * 1 2 3 27 27 H 1.09002 * 109.47436 * 29.72977 * 1 2 3 28 28 H 1.08005 * 120.25928 * 359.97438 * 3 2 1 29 29 H 1.07996 * 120.77637 * 180.24185 * 4 3 2 30 30 H 0.97003 * 119.99715 * 174.16437 * 6 5 4 31 31 H 0.97003 * 119.99216 * 185.00759 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1886 1.2078 0.0000 4 6 3.5721 1.2090 0.0053 5 6 4.2371 -0.0163 -0.0005 6 7 5.6276 -0.0666 -0.0012 7 6 6.3619 1.1001 -0.1178 8 6 6.2096 1.9078 -1.2384 9 1 6.3910 2.9701 -1.1670 10 6 5.8187 1.3412 -2.4672 11 7 5.5458 0.0689 -2.5405 12 14 5.6915 2.4132 -3.9917 13 1 7.0153 3.0205 -4.2816 14 1 5.2637 1.5831 -5.1462 15 1 4.6939 3.4883 -3.7590 16 6 7.2657 1.4699 0.9013 17 6 8.1071 2.6161 0.7308 18 7 8.7744 3.5253 0.5955 19 6 7.3415 0.6990 2.1057 20 7 7.4015 0.0874 3.0612 21 6 3.4810 -1.1969 -0.0061 22 6 4.1436 -2.4665 -0.0115 23 7 4.6691 -3.4736 -0.0169 24 7 2.1532 -1.1447 -0.0054 25 1 -0.3634 -0.0049 1.0276 26 1 -0.3633 -0.8875 -0.5181 27 1 -0.3634 0.8924 -0.5096 28 1 1.6437 2.1403 -0.0004 29 1 4.1239 2.1373 0.0093 30 1 6.0820 -0.9197 0.0802 31 1 5.3475 -0.3358 -3.3995 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169079570.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:31 Heat of formation + Delta-G solvation = 118.855724 kcal Electronic energy + Delta-G solvation = -20157.882474 eV Core-core repulsion = 17018.334858 eV Total energy + Delta-G solvation = -3139.547616 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.081 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.28147 -37.74014 -36.14451 -35.49919 -34.87467 -33.98818 -32.26976 -31.86796 -30.06298 -27.35235 -26.75229 -24.23528 -22.56838 -21.06680 -19.13867 -18.64977 -17.60878 -17.47282 -16.34861 -15.91889 -14.95740 -14.56555 -14.27633 -13.88903 -13.30352 -13.17071 -13.02657 -12.84014 -12.73376 -12.43864 -12.34437 -12.12265 -12.09384 -11.94860 -11.84283 -11.77889 -11.70717 -11.63677 -11.21095 -11.08120 -10.92499 -10.35374 -10.17918 -9.37310 -9.23849 -8.36417 -7.86289 -6.99958 -5.64970 1.06758 1.59603 2.14772 2.61188 2.66738 2.77510 2.95095 3.27069 3.29298 3.61355 3.74481 3.92175 4.00452 4.06072 4.22757 4.33947 4.92995 4.98559 5.11891 5.21646 5.36875 5.52113 5.64559 5.75525 5.81693 6.05916 6.08541 6.17121 6.29871 6.48370 6.71539 6.89085 7.06995 7.43555 7.57237 7.81323 7.93740 8.14845 8.23105 8.79845 8.97117 9.08157 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.012210 B = 0.008043 C = 0.006288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2292.645460 B = 3480.292052 C = 4451.789923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.060 3.940 3 C -0.100 4.100 4 C -0.134 4.134 5 C 0.266 3.734 6 N -0.639 5.639 7 C 0.372 3.628 8 C -0.381 4.381 9 H 0.114 0.886 10 C 0.069 3.931 11 N -0.726 5.726 12 Si 0.929 3.071 13 H -0.253 1.253 14 H -0.269 1.269 15 H -0.250 1.250 16 C -0.298 4.298 17 C 0.324 3.676 18 N -0.524 5.524 19 C 0.304 3.696 20 N -0.523 5.523 21 C 0.095 3.905 22 C 0.285 3.715 23 N -0.422 5.422 24 N -0.418 5.418 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.136 0.864 29 H 0.155 0.845 30 H 0.404 0.596 31 H 0.305 0.695 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.970 2.840 -5.057 12.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.087 4.087 3 C -0.122 4.122 4 C -0.163 4.163 5 C 0.153 3.847 6 N -0.256 5.256 7 C 0.268 3.732 8 C -0.409 4.409 9 H 0.132 0.868 10 C -0.162 4.162 11 N -0.345 5.345 12 Si 0.750 3.250 13 H -0.176 1.176 14 H -0.193 1.193 15 H -0.173 1.173 16 C -0.315 4.315 17 C 0.016 3.984 18 N -0.206 5.206 19 C -0.004 4.004 20 N -0.204 5.204 21 C -0.047 4.047 22 C -0.031 4.031 23 N -0.100 5.100 24 N -0.128 5.128 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.154 0.846 29 H 0.173 0.827 30 H 0.241 0.759 31 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -9.522 0.867 -3.937 10.340 hybrid contribution 0.231 0.888 -1.138 1.461 sum -9.291 1.754 -5.075 10.731 Atomic orbital electron populations 1.20517 0.88986 1.02785 1.02406 1.20771 0.96443 0.87583 1.03854 1.21920 0.94046 0.98952 0.97275 1.21402 0.94162 0.97437 1.03315 1.18272 0.83850 0.93135 0.89482 1.41623 1.01960 1.08890 1.73097 1.16835 0.85394 0.81835 0.89119 1.20284 1.30988 0.98177 0.91414 0.86784 1.26526 0.91081 0.95977 1.02603 1.69481 1.22619 1.11998 1.30412 0.85900 0.81250 0.80181 0.77623 1.17631 1.19291 1.17335 1.12969 1.17682 1.04849 0.96050 1.24609 0.90906 0.91068 0.91856 1.81080 1.14814 1.14431 1.10268 1.25225 0.91609 0.91954 0.91656 1.81105 1.13365 1.13323 1.12645 1.15582 0.88694 0.85388 1.14992 1.24926 0.93121 0.92030 0.92991 1.81168 1.08585 1.10147 1.10119 1.67039 1.06582 1.30228 1.08961 0.91229 0.91158 0.91170 0.84579 0.82746 0.75915 0.88282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.87 10.16 36.01 0.37 -0.51 16 2 C 0.06 0.81 6.78 -82.59 -0.56 0.25 16 3 C -0.10 -1.27 9.72 -39.38 -0.38 -1.65 16 4 C -0.13 -2.01 8.86 -39.10 -0.35 -2.36 16 5 C 0.27 4.54 5.24 -83.37 -0.44 4.10 16 6 N -0.64 -11.64 3.21 -7.90 -0.03 -11.67 16 7 C 0.37 6.98 5.02 -83.55 -0.42 6.57 16 8 C -0.38 -6.83 6.55 -38.32 -0.25 -7.09 16 9 H 0.11 2.02 7.29 -52.49 -0.38 1.64 16 10 C 0.07 1.18 5.21 -17.20 -0.09 1.09 16 11 N -0.73 -12.91 10.93 55.60 0.61 -12.30 16 12 Si 0.93 13.52 29.57 -169.99 -5.03 8.50 16 13 H -0.25 -3.88 7.11 56.52 0.40 -3.48 16 14 H -0.27 -3.91 7.11 56.52 0.40 -3.51 16 15 H -0.25 -3.54 7.11 56.52 0.40 -3.14 16 16 C -0.30 -6.01 5.88 -104.94 -0.62 -6.63 16 17 C 0.32 6.87 14.05 -22.47 -0.32 6.56 16 18 N -0.52 -11.66 18.54 41.84 0.78 -10.89 16 19 C 0.30 6.54 14.82 -22.47 -0.33 6.21 16 20 N -0.52 -11.96 18.54 41.84 0.78 -11.18 16 21 C 0.09 1.66 6.61 -84.75 -0.56 1.10 16 22 C 0.29 5.32 14.31 -22.47 -0.32 5.00 16 23 N -0.42 -8.30 18.54 41.84 0.78 -7.52 16 24 N -0.42 -6.85 10.18 -7.17 -0.07 -6.92 16 25 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.07 0.53 8.07 -51.93 -0.42 0.11 16 28 H 0.14 1.25 8.06 -52.48 -0.42 0.83 16 29 H 0.15 2.27 6.27 -52.49 -0.33 1.94 16 30 H 0.40 7.64 7.71 -40.82 -0.31 7.33 16 31 H 0.30 5.09 8.29 -40.82 -0.34 4.75 16 LS Contribution 306.02 15.07 4.61 4.61 Total: -1.00 -24.11 306.02 -3.70 -27.81 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -1.85 Total: 6.93 kcal Atomic # 6 Polarization: 16.90 SS G_CDS: -4.27 Total: 12.63 kcal Atomic # 7 Polarization: -63.31 SS G_CDS: 2.84 Total: -60.47 kcal Atomic # 14 Polarization: 13.52 SS G_CDS: -5.03 Total: 8.50 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -24.11 -3.70 -27.81 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169079570.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.664 kcal (2) G-P(sol) polarization free energy of solvation -24.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds