Wall clock time and date at job start Wed Apr 15 2020 11:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38685 * 119.43864 * 2 1 4 4 C 1.38349 * 119.48878 * 179.74834 * 3 2 1 5 5 C 1.39413 * 118.43649 * 0.51419 * 4 3 2 6 6 N 1.39140 * 120.55917 * 179.73143 * 5 4 3 7 7 C 1.38345 * 120.00085 * 354.16664 * 6 5 4 8 8 C 1.38971 * 119.99727 * 300.45401 * 7 6 5 9 9 H 1.08002 * 120.00076 * 152.13329 * 8 7 6 10 10 C 1.40851 * 120.00454 * 332.12859 * 8 7 6 11 11 N 1.30330 * 119.99303 * 2.86433 * 10 8 7 12 12 Si 1.86799 * 120.00010 * 182.86267 * 10 8 7 13 13 H 1.48496 * 109.47238 * 60.00265 * 12 10 8 14 14 H 1.48498 * 109.46673 * 180.02562 * 12 10 8 15 15 H 1.48498 * 109.47276 * 299.99708 * 12 10 8 16 16 C 1.41148 * 119.99783 * 120.45378 * 7 6 5 17 17 C 1.43202 * 119.99813 * 174.76246 * 16 7 6 18 18 N 8.09929 * 153.80468 * 9.58858 * 2 1 3 19 19 C 1.43202 * 120.00502 * 354.76178 * 16 7 6 20 20 N 6.64255 * 152.54619 * 88.36528 * 2 1 3 21 21 C 1.40197 * 118.87660 * 359.74850 * 5 4 3 22 22 C 1.43206 * 119.80620 * 180.02562 * 21 5 4 23 23 N 4.69735 * 132.31258 * 180.27827 * 2 1 3 24 24 N 1.31455 * 119.44519 * 180.27147 * 2 1 3 25 25 H 1.08999 * 109.47443 * 269.72646 * 1 2 3 26 26 H 1.09001 * 109.46887 * 149.72763 * 1 2 3 27 27 H 1.09002 * 109.47436 * 29.72977 * 1 2 3 28 28 H 1.08005 * 120.25928 * 359.97438 * 3 2 1 29 29 H 1.07996 * 120.77637 * 180.24185 * 4 3 2 30 30 H 0.97003 * 119.99715 * 174.16437 * 6 5 4 31 31 H 0.97003 * 119.99216 * 185.00759 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1886 1.2078 0.0000 4 6 3.5721 1.2090 0.0053 5 6 4.2371 -0.0163 -0.0005 6 7 5.6276 -0.0666 -0.0012 7 6 6.3619 1.1001 -0.1178 8 6 6.2096 1.9078 -1.2384 9 1 6.3910 2.9701 -1.1670 10 6 5.8187 1.3412 -2.4672 11 7 5.5458 0.0689 -2.5405 12 14 5.6915 2.4132 -3.9917 13 1 7.0153 3.0205 -4.2816 14 1 5.2637 1.5831 -5.1462 15 1 4.6939 3.4883 -3.7590 16 6 7.2657 1.4699 0.9013 17 6 8.1071 2.6161 0.7308 18 7 8.7744 3.5253 0.5955 19 6 7.3415 0.6990 2.1057 20 7 7.4015 0.0874 3.0612 21 6 3.4810 -1.1969 -0.0061 22 6 4.1436 -2.4665 -0.0115 23 7 4.6691 -3.4736 -0.0169 24 7 2.1532 -1.1447 -0.0054 25 1 -0.3634 -0.0049 1.0276 26 1 -0.3633 -0.8875 -0.5181 27 1 -0.3634 0.8924 -0.5096 28 1 1.6437 2.1403 -0.0004 29 1 4.1239 2.1373 0.0093 30 1 6.0820 -0.9197 0.0802 31 1 5.3475 -0.3358 -3.3995 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169079570.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:30 Heat of formation + Delta-G solvation = 106.969714 kcal Electronic energy + Delta-G solvation = -20158.397890 eV Core-core repulsion = 17018.334858 eV Total energy + Delta-G solvation = -3140.063032 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.081 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.50554 -39.12251 -37.58771 -37.11772 -36.57162 -35.35782 -33.50209 -33.12087 -31.30922 -28.86254 -27.87709 -25.43779 -23.86106 -22.38675 -20.64474 -19.93179 -18.96564 -18.89805 -17.72723 -17.19826 -16.23154 -15.79090 -15.42802 -15.18048 -14.75392 -14.43538 -14.38446 -14.28900 -14.13399 -13.88599 -13.74509 -13.49933 -13.46122 -13.38941 -13.25117 -13.00155 -12.94578 -12.76413 -12.72259 -12.66213 -12.10956 -11.67449 -11.47138 -10.53729 -10.40416 -9.80944 -9.20401 -8.34621 -7.18667 -0.16699 0.32672 0.85259 1.41554 1.52885 1.55208 1.59038 1.93172 2.01615 2.09182 2.20644 2.23998 2.56711 2.66575 2.74241 3.08596 3.35340 3.78241 3.88667 3.98362 4.17171 4.28921 4.56389 4.63689 4.68534 4.98402 5.05715 5.16030 5.23673 5.38352 5.40669 5.55536 5.82506 5.98539 6.14656 6.38810 6.53977 6.71244 7.05605 7.14582 7.31785 7.71926 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.012210 B = 0.008043 C = 0.006288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2292.645460 B = 3480.292052 C = 4451.789923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.064 3.936 3 C -0.082 4.082 4 C -0.142 4.142 5 C 0.253 3.747 6 N -0.645 5.645 7 C 0.369 3.631 8 C -0.367 4.367 9 H 0.119 0.881 10 C 0.048 3.952 11 N -0.735 5.735 12 Si 0.982 3.018 13 H -0.265 1.265 14 H -0.267 1.267 15 H -0.236 1.236 16 C -0.313 4.313 17 C 0.332 3.668 18 N -0.549 5.549 19 C 0.313 3.687 20 N -0.557 5.557 21 C 0.071 3.929 22 C 0.293 3.707 23 N -0.455 5.455 24 N -0.439 5.439 25 H 0.083 0.917 26 H 0.066 0.934 27 H 0.101 0.899 28 H 0.182 0.818 29 H 0.158 0.842 30 H 0.395 0.605 31 H 0.311 0.689 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.400 4.604 -6.509 15.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.083 4.083 3 C -0.103 4.103 4 C -0.172 4.172 5 C 0.141 3.859 6 N -0.262 5.262 7 C 0.265 3.735 8 C -0.394 4.394 9 H 0.137 0.863 10 C -0.182 4.182 11 N -0.353 5.353 12 Si 0.801 3.199 13 H -0.189 1.189 14 H -0.191 1.191 15 H -0.158 1.158 16 C -0.332 4.332 17 C 0.025 3.975 18 N -0.232 5.232 19 C 0.006 3.994 20 N -0.240 5.240 21 C -0.068 4.068 22 C -0.022 4.022 23 N -0.134 5.134 24 N -0.150 5.150 25 H 0.102 0.898 26 H 0.085 0.915 27 H 0.120 0.880 28 H 0.199 0.801 29 H 0.176 0.824 30 H 0.231 0.769 31 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -11.970 2.610 -5.374 13.377 hybrid contribution 0.796 0.360 -0.800 1.185 sum -11.173 2.970 -6.174 13.106 Atomic orbital electron populations 1.20671 0.85936 1.04235 1.03750 1.21583 0.98370 0.87090 1.01268 1.22401 0.93067 1.00518 0.94282 1.21622 0.95420 0.96646 1.03484 1.18448 0.83239 0.93895 0.90294 1.41573 1.02505 1.08179 1.73933 1.16829 0.85521 0.82237 0.88953 1.20526 1.29169 0.98323 0.91359 0.86313 1.27110 0.90522 0.96585 1.04027 1.69525 1.21545 1.12915 1.31314 0.85127 0.80794 0.79065 0.74889 1.18895 1.19091 1.15848 1.12991 1.18876 1.05085 0.96257 1.24709 0.90569 0.90939 0.91323 1.81073 1.15728 1.15330 1.11040 1.25436 0.90860 0.91512 0.91559 1.81091 1.14727 1.14542 1.13686 1.15590 0.89389 0.84790 1.17006 1.25316 0.92551 0.92203 0.92119 1.81144 1.09492 1.11127 1.11607 1.67096 1.05977 1.31925 1.10030 0.89796 0.91505 0.88002 0.80103 0.82405 0.76918 0.87685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.35 10.16 71.24 0.72 -0.63 16 2 C 0.06 1.53 6.78 42.72 0.29 1.82 16 3 C -0.08 -1.74 9.72 22.40 0.22 -1.53 16 4 C -0.14 -3.97 8.86 22.58 0.20 -3.77 16 5 C 0.25 8.47 5.24 38.74 0.20 8.67 16 6 N -0.65 -23.61 3.21 -178.90 -0.58 -24.18 16 7 C 0.37 13.73 5.02 39.01 0.20 13.93 16 8 C -0.37 -12.63 6.55 23.09 0.15 -12.48 16 9 H 0.12 3.98 7.29 -2.91 -0.02 3.96 16 10 C 0.05 1.53 5.21 85.56 0.45 1.98 16 11 N -0.73 -25.17 10.93 21.98 0.24 -24.93 16 12 Si 0.98 25.36 29.57 68.60 2.03 27.39 16 13 H -0.26 -7.39 7.11 99.48 0.71 -6.68 16 14 H -0.27 -6.81 7.11 99.48 0.71 -6.11 16 15 H -0.24 -5.59 7.11 99.48 0.71 -4.88 16 16 C -0.31 -12.74 5.88 -20.07 -0.12 -12.85 16 17 C 0.33 14.06 14.05 88.33 1.24 15.30 16 18 N -0.55 -24.31 18.54 19.00 0.35 -23.96 16 19 C 0.31 13.74 14.82 88.33 1.31 15.05 16 20 N -0.56 -26.11 18.54 19.01 0.35 -25.76 16 21 C 0.07 2.48 6.61 40.71 0.27 2.75 16 22 C 0.29 11.20 14.31 88.33 1.26 12.46 16 23 N -0.45 -18.45 18.54 19.01 0.35 -18.10 16 24 N -0.44 -13.80 10.18 -176.61 -1.80 -15.60 16 25 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.10 0.95 8.07 -2.39 -0.02 0.93 16 28 H 0.18 2.23 8.06 -2.91 -0.02 2.21 16 29 H 0.16 4.27 6.27 -2.91 -0.02 4.25 16 30 H 0.39 15.43 7.71 -92.71 -0.71 14.72 16 31 H 0.31 9.92 8.29 -92.71 -0.77 9.16 16 Total: -1.00 -52.58 306.02 7.86 -44.72 By element: Atomic # 1 Polarization: 19.22 SS G_CDS: 0.52 Total: 19.74 kcal Atomic # 6 Polarization: 34.30 SS G_CDS: 6.39 Total: 40.69 kcal Atomic # 7 Polarization: -131.46 SS G_CDS: -1.08 Total: -132.53 kcal Atomic # 14 Polarization: 25.36 SS G_CDS: 2.03 Total: 27.39 kcal Total: -52.58 7.86 -44.72 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169079570.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.686 kcal (2) G-P(sol) polarization free energy of solvation -52.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds