Wall clock time and date at job start Wed Apr 15 2020 11:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36962 * 120.30316 * 2 1 4 4 C 1.40298 * 118.48361 * 179.76090 * 3 2 1 5 5 C 1.43199 * 120.48737 * 180.23752 * 4 3 2 6 6 N 4.79133 * 136.32942 * 0.25517 * 2 1 3 7 7 C 1.39642 * 119.02800 * 0.51179 * 4 3 2 8 8 N 1.31664 * 120.50991 * 359.72862 * 7 4 3 9 9 C 1.32582 * 121.64583 * 0.02596 * 8 7 4 10 10 N 1.38780 * 119.53156 * 180.02562 * 9 8 7 11 11 C 1.38414 * 119.99585 * 355.68347 * 10 9 8 12 12 C 1.38950 * 120.00171 * 300.32962 * 11 10 9 13 13 H 1.08000 * 120.00390 * 148.56245 * 12 11 10 14 14 C 1.40867 * 119.99978 * 328.55747 * 12 11 10 15 15 N 1.30322 * 119.99566 * 3.59860 * 14 12 11 16 16 Si 1.86803 * 119.99816 * 183.59575 * 14 12 11 17 17 H 1.48500 * 109.46591 * 90.00611 * 16 14 12 18 18 H 1.48497 * 109.46668 * 210.00402 * 16 14 12 19 19 H 1.48491 * 109.47419 * 330.00409 * 16 14 12 20 20 C 1.41145 * 119.99863 * 120.32767 * 11 10 9 21 21 C 1.43198 * 119.99898 * 185.10232 * 20 11 10 22 22 N 7.04254 * 106.46471 * 172.86097 * 2 1 3 23 23 C 1.43203 * 119.99822 * 5.10872 * 20 11 10 24 24 N 5.17484 * 78.19975 * 145.59042 * 2 1 3 25 25 H 1.08999 * 109.47442 * 269.72101 * 1 2 3 26 26 H 1.08999 * 109.46577 * 149.72172 * 1 2 3 27 27 H 1.09004 * 109.46936 * 29.72493 * 1 2 3 28 28 H 1.07999 * 120.75658 * 0.02586 * 3 2 1 29 29 H 1.08004 * 119.74339 * 179.74959 * 7 4 3 30 30 H 0.97001 * 120.00072 * 175.68754 * 10 9 8 31 31 H 0.97003 * 119.99173 * 185.00299 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1825 0.0000 4 6 3.6003 1.1379 0.0051 5 6 4.3656 2.3483 0.0105 6 7 4.9727 3.3084 0.0147 7 6 4.2389 -0.1039 -0.0008 8 7 3.5357 -1.2171 -0.0058 9 6 2.2099 -1.2024 -0.0058 10 7 1.5126 -2.4022 -0.0106 11 6 2.1983 -3.6008 -0.1056 12 6 3.0014 -3.8562 -1.2104 13 1 3.8844 -4.4691 -1.1060 14 6 2.6636 -3.3157 -2.4666 15 7 1.6381 -2.5194 -2.5789 16 14 3.6857 -3.7404 -3.9714 17 1 3.1289 -4.9540 -4.6214 18 1 3.6516 -2.6061 -4.9291 19 1 5.0889 -3.9988 -3.5599 20 6 2.0819 -4.5636 0.9200 21 6 2.8744 -5.7555 0.8763 22 7 3.5030 -6.7014 0.8393 23 6 1.1712 -4.3485 2.0039 24 7 0.4487 -4.1791 2.8625 25 1 -0.3634 -0.0050 1.0276 26 1 -0.3632 -0.8875 -0.5182 27 1 -0.3633 0.8925 -0.5096 28 1 1.6755 2.1276 0.0004 29 1 5.3178 -0.1517 -0.0011 30 1 0.5446 -2.4009 0.0525 31 1 1.3617 -2.2052 -3.4540 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169081069.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:11 Heat of formation + Delta-G solvation = 121.602831 kcal Electronic energy + Delta-G solvation = -20053.417790 eV Core-core repulsion = 16913.989297 eV Total energy + Delta-G solvation = -3139.428493 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.081 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.31391 -37.52341 -36.25607 -35.27633 -34.78993 -33.92026 -33.35402 -31.59084 -29.44823 -27.18400 -26.98673 -23.80106 -22.62718 -21.30125 -19.15776 -18.14820 -17.75375 -17.39908 -16.32151 -16.05606 -15.04064 -14.49914 -13.95213 -13.76003 -13.54868 -13.26694 -12.97596 -12.88603 -12.66211 -12.60489 -12.44567 -12.35998 -12.31867 -11.92128 -11.74170 -11.60893 -11.53130 -11.51738 -11.08162 -10.99341 -10.77110 -10.07141 -10.03645 -9.38604 -9.10222 -8.21630 -7.79143 -7.06766 -5.42974 1.09247 1.58200 2.11883 2.70747 2.76968 2.82636 2.87267 3.31899 3.40625 3.59186 3.79928 4.00376 4.16012 4.20954 4.26749 4.32714 4.79068 4.99719 5.11817 5.16667 5.28695 5.49723 5.59471 5.79607 5.84484 6.15224 6.16074 6.22549 6.29731 6.36791 6.65893 7.04746 7.23965 7.51279 7.69727 7.74505 7.88332 8.17058 8.61738 8.87695 9.08611 9.20588 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.012936 B = 0.007214 C = 0.005769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2164.054227 B = 3880.212939 C = 4852.014733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.200 4.200 3 C 0.007 3.993 4 C -0.175 4.175 5 C 0.279 3.721 6 N -0.453 5.453 7 C 0.205 3.795 8 N -0.512 5.512 9 C 0.474 3.526 10 N -0.623 5.623 11 C 0.387 3.613 12 C -0.356 4.356 13 H 0.111 0.889 14 C 0.075 3.925 15 N -0.741 5.741 16 Si 0.929 3.071 17 H -0.259 1.259 18 H -0.269 1.269 19 H -0.249 1.249 20 C -0.303 4.303 21 C 0.326 3.674 22 N -0.530 5.530 23 C 0.307 3.693 24 N -0.532 5.532 25 H 0.066 0.934 26 H 0.071 0.929 27 H 0.066 0.934 28 H 0.133 0.867 29 H 0.159 0.841 30 H 0.409 0.591 31 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.951 7.559 -5.057 9.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.207 4.207 3 C -0.020 4.020 4 C -0.184 4.184 5 C -0.035 4.035 6 N -0.130 5.130 7 C 0.040 3.960 8 N -0.227 5.227 9 C 0.236 3.764 10 N -0.244 5.244 11 C 0.283 3.717 12 C -0.384 4.384 13 H 0.129 0.871 14 C -0.154 4.154 15 N -0.361 5.361 16 Si 0.751 3.249 17 H -0.183 1.183 18 H -0.194 1.194 19 H -0.172 1.172 20 C -0.322 4.322 21 C 0.018 3.982 22 N -0.212 5.212 23 C 0.000 4.000 24 N -0.214 5.214 25 H 0.084 0.916 26 H 0.090 0.910 27 H 0.085 0.915 28 H 0.151 0.849 29 H 0.176 0.824 30 H 0.248 0.752 31 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.842 7.055 -3.932 8.120 hybrid contribution -0.698 0.678 -1.119 1.483 sum -1.541 7.733 -5.051 9.364 Atomic orbital electron populations 1.20581 0.90219 1.03132 1.02016 1.19678 0.97297 0.91769 1.11955 1.20750 0.91483 0.97829 0.91985 1.16660 0.92460 0.88605 1.20707 1.25522 0.93035 0.92583 0.92372 1.81204 1.09101 1.10950 1.11760 1.22586 0.99700 0.85107 0.88642 1.67525 1.05705 1.29658 1.19764 1.18026 0.88001 0.85003 0.85362 1.41638 1.08545 1.01965 1.72274 1.16735 0.85176 0.81367 0.88390 1.20139 1.08040 1.19730 0.90529 0.87129 1.26487 0.95081 0.91358 1.02495 1.69442 1.19414 1.18408 1.28848 0.85872 0.81290 0.79571 0.78187 1.18288 1.19364 1.17156 1.12966 1.17556 0.98790 1.02866 1.24629 0.91045 0.90927 0.91583 1.81077 1.15468 1.13340 1.11293 1.25188 0.91412 0.92060 0.91326 1.81029 1.16599 1.10781 1.12998 0.91554 0.91038 0.91502 0.84917 0.82412 0.75185 0.88810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.14 9.53 36.01 0.34 -0.79 16 2 C -0.20 -2.71 5.88 -104.70 -0.62 -3.33 16 3 C 0.01 0.08 9.51 -39.27 -0.37 -0.29 16 4 C -0.17 -2.29 5.75 -106.67 -0.61 -2.91 16 5 C 0.28 3.85 15.37 -22.47 -0.35 3.51 16 6 N -0.45 -7.06 18.54 41.84 0.78 -6.29 16 7 C 0.20 2.88 10.92 -17.10 -0.19 2.69 16 8 N -0.51 -8.63 8.92 -12.08 -0.11 -8.74 16 9 C 0.47 7.74 6.31 -155.03 -0.98 6.76 16 10 N -0.62 -10.74 3.16 -9.74 -0.03 -10.77 16 11 C 0.39 7.52 5.40 -83.52 -0.45 7.07 16 12 C -0.36 -6.94 7.49 -38.32 -0.29 -7.23 16 13 H 0.11 2.24 7.24 -52.49 -0.38 1.86 16 14 C 0.07 1.33 5.35 -17.20 -0.09 1.24 16 15 N -0.74 -12.83 11.24 55.60 0.63 -12.21 16 16 Si 0.93 14.47 29.57 -169.99 -5.03 9.45 16 17 H -0.26 -4.09 7.11 56.52 0.40 -3.68 16 18 H -0.27 -4.13 7.11 56.52 0.40 -3.73 16 19 H -0.25 -4.01 7.11 56.52 0.40 -3.61 16 20 C -0.30 -6.31 5.88 -104.94 -0.62 -6.92 16 21 C 0.33 7.22 14.03 -22.46 -0.32 6.90 16 22 N -0.53 -12.25 18.54 41.85 0.78 -11.47 16 23 C 0.31 6.54 14.80 -22.51 -0.33 6.20 16 24 N -0.53 -11.74 18.53 41.79 0.77 -10.96 16 25 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.07 0.84 6.61 -51.93 -0.34 0.49 16 27 H 0.07 0.62 8.09 -51.93 -0.42 0.20 16 28 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 29 H 0.16 1.83 8.06 -52.48 -0.42 1.41 16 30 H 0.41 6.56 6.79 -40.82 -0.28 6.28 16 31 H 0.30 4.76 8.29 -40.82 -0.34 4.42 16 LS Contribution 307.32 15.07 4.63 4.63 Total: -1.00 -24.38 307.32 -4.27 -28.65 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -1.82 Total: 4.80 kcal Atomic # 6 Polarization: 17.77 SS G_CDS: -4.87 Total: 12.91 kcal Atomic # 7 Polarization: -63.25 SS G_CDS: 2.81 Total: -60.44 kcal Atomic # 14 Polarization: 14.47 SS G_CDS: -5.03 Total: 9.45 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -24.38 -4.27 -28.65 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169081069.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.255 kcal (2) G-P(sol) polarization free energy of solvation -24.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds