Wall clock time and date at job start Wed Apr 15 2020 11:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36962 * 120.30316 * 2 1 4 4 C 1.40298 * 118.48361 * 179.76090 * 3 2 1 5 5 C 1.43199 * 120.48737 * 180.23752 * 4 3 2 6 6 N 4.79133 * 136.32942 * 0.25517 * 2 1 3 7 7 C 1.39642 * 119.02800 * 0.51179 * 4 3 2 8 8 N 1.31664 * 120.50991 * 359.72862 * 7 4 3 9 9 C 1.32582 * 121.64583 * 0.02596 * 8 7 4 10 10 N 1.38780 * 119.53156 * 180.02562 * 9 8 7 11 11 C 1.38414 * 119.99585 * 355.68347 * 10 9 8 12 12 C 1.38950 * 120.00171 * 300.32962 * 11 10 9 13 13 H 1.08000 * 120.00390 * 148.56245 * 12 11 10 14 14 C 1.40867 * 119.99978 * 328.55747 * 12 11 10 15 15 N 1.30322 * 119.99566 * 3.59860 * 14 12 11 16 16 Si 1.86803 * 119.99816 * 183.59575 * 14 12 11 17 17 H 1.48500 * 109.46591 * 90.00611 * 16 14 12 18 18 H 1.48497 * 109.46668 * 210.00402 * 16 14 12 19 19 H 1.48491 * 109.47419 * 330.00409 * 16 14 12 20 20 C 1.41145 * 119.99863 * 120.32767 * 11 10 9 21 21 C 1.43198 * 119.99898 * 185.10232 * 20 11 10 22 22 N 7.04254 * 106.46471 * 172.86097 * 2 1 3 23 23 C 1.43203 * 119.99822 * 5.10872 * 20 11 10 24 24 N 5.17484 * 78.19975 * 145.59042 * 2 1 3 25 25 H 1.08999 * 109.47442 * 269.72101 * 1 2 3 26 26 H 1.08999 * 109.46577 * 149.72172 * 1 2 3 27 27 H 1.09004 * 109.46936 * 29.72493 * 1 2 3 28 28 H 1.07999 * 120.75658 * 0.02586 * 3 2 1 29 29 H 1.08004 * 119.74339 * 179.74959 * 7 4 3 30 30 H 0.97001 * 120.00072 * 175.68754 * 10 9 8 31 31 H 0.97003 * 119.99173 * 185.00299 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1825 0.0000 4 6 3.6003 1.1379 0.0051 5 6 4.3656 2.3483 0.0105 6 7 4.9727 3.3084 0.0147 7 6 4.2389 -0.1039 -0.0008 8 7 3.5357 -1.2171 -0.0058 9 6 2.2099 -1.2024 -0.0058 10 7 1.5126 -2.4022 -0.0106 11 6 2.1983 -3.6008 -0.1056 12 6 3.0014 -3.8562 -1.2104 13 1 3.8844 -4.4691 -1.1060 14 6 2.6636 -3.3157 -2.4666 15 7 1.6381 -2.5194 -2.5789 16 14 3.6857 -3.7404 -3.9714 17 1 3.1289 -4.9540 -4.6214 18 1 3.6516 -2.6061 -4.9291 19 1 5.0889 -3.9988 -3.5599 20 6 2.0819 -4.5636 0.9200 21 6 2.8744 -5.7555 0.8763 22 7 3.5030 -6.7014 0.8393 23 6 1.1712 -4.3485 2.0039 24 7 0.4487 -4.1791 2.8625 25 1 -0.3634 -0.0050 1.0276 26 1 -0.3632 -0.8875 -0.5182 27 1 -0.3633 0.8925 -0.5096 28 1 1.6755 2.1276 0.0004 29 1 5.3178 -0.1517 -0.0011 30 1 0.5446 -2.4009 0.0525 31 1 1.3617 -2.2052 -3.4540 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169081069.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:11 Heat of formation + Delta-G solvation = 111.198860 kcal Electronic energy + Delta-G solvation = -20053.868940 eV Core-core repulsion = 16913.989297 eV Total energy + Delta-G solvation = -3139.879643 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.081 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.46570 -38.89657 -37.52383 -36.83529 -36.50528 -35.21878 -34.49053 -32.92534 -30.74545 -28.69699 -28.00771 -25.02363 -23.73926 -22.67800 -20.67783 -19.28475 -18.93738 -18.89535 -17.72605 -17.35261 -16.31651 -15.63614 -15.15430 -15.01835 -14.62734 -14.56051 -14.41088 -14.27858 -14.01642 -13.84030 -13.73507 -13.46865 -13.40457 -13.38218 -13.31184 -13.29597 -12.93860 -12.66074 -12.64374 -12.49893 -12.05577 -11.44123 -11.33205 -10.46966 -10.24567 -9.64798 -9.15797 -8.35720 -7.00542 -0.06203 0.52946 0.72054 1.42331 1.53285 1.55423 1.75129 2.07765 2.12817 2.18419 2.26066 2.28585 2.62863 2.75365 3.07652 3.16472 3.46369 3.69069 3.92168 4.02432 4.10176 4.27745 4.56549 4.67157 4.80799 4.87576 4.95899 5.14492 5.25552 5.36071 5.49675 5.58224 5.87094 6.08930 6.28843 6.53113 6.62489 6.76025 7.21650 7.36148 7.45400 7.82193 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.012936 B = 0.007214 C = 0.005769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2164.054227 B = 3880.212939 C = 4852.014733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.198 4.198 3 C 0.015 3.985 4 C -0.164 4.164 5 C 0.300 3.700 6 N -0.481 5.481 7 C 0.197 3.803 8 N -0.543 5.543 9 C 0.452 3.548 10 N -0.627 5.627 11 C 0.386 3.614 12 C -0.358 4.358 13 H 0.097 0.903 14 C 0.054 3.946 15 N -0.733 5.733 16 Si 0.976 3.024 17 H -0.260 1.260 18 H -0.259 1.259 19 H -0.260 1.260 20 C -0.321 4.321 21 C 0.330 3.670 22 N -0.559 5.559 23 C 0.316 3.684 24 N -0.552 5.552 25 H 0.072 0.928 26 H 0.063 0.937 27 H 0.090 0.910 28 H 0.165 0.835 29 H 0.176 0.824 30 H 0.412 0.588 31 H 0.311 0.689 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.462 9.401 -6.329 11.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.205 4.205 3 C -0.012 4.012 4 C -0.174 4.174 5 C -0.014 4.014 6 N -0.158 5.158 7 C 0.033 3.967 8 N -0.258 5.258 9 C 0.216 3.784 10 N -0.249 5.249 11 C 0.282 3.718 12 C -0.385 4.385 13 H 0.115 0.885 14 C -0.176 4.176 15 N -0.352 5.352 16 Si 0.797 3.203 17 H -0.184 1.184 18 H -0.182 1.182 19 H -0.184 1.184 20 C -0.341 4.341 21 C 0.024 3.976 22 N -0.242 5.242 23 C 0.010 3.990 24 N -0.236 5.236 25 H 0.091 0.909 26 H 0.082 0.918 27 H 0.109 0.891 28 H 0.183 0.817 29 H 0.193 0.807 30 H 0.252 0.748 31 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -1.364 8.941 -5.196 10.431 hybrid contribution -0.515 0.245 -0.814 0.994 sum -1.879 9.186 -6.010 11.138 Atomic orbital electron populations 1.20622 0.88462 1.03951 1.02670 1.19923 0.98572 0.91009 1.11042 1.21089 0.91063 0.98725 0.90311 1.16671 0.92920 0.87910 1.19899 1.25431 0.92306 0.92137 0.91497 1.81241 1.09941 1.11915 1.12686 1.22878 1.00531 0.84863 0.88422 1.67466 1.06445 1.31135 1.20780 1.18314 0.88215 0.85411 0.86464 1.41527 1.08606 1.01562 1.73230 1.16664 0.85516 0.81893 0.87758 1.20216 1.07538 1.19346 0.91444 0.88501 1.26883 0.95851 0.91566 1.03265 1.69412 1.18729 1.17083 1.29989 0.85184 0.79519 0.79527 0.76107 1.18445 1.18242 1.18350 1.13065 1.18200 0.99109 1.03681 1.24889 0.90784 0.90960 0.90990 1.81054 1.16666 1.14216 1.12257 1.25220 0.91140 0.91571 0.91087 1.81014 1.17474 1.11507 1.13572 0.90929 0.91805 0.89077 0.81735 0.80692 0.74795 0.87644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.95 9.53 71.24 0.68 -1.27 16 2 C -0.20 -4.90 5.88 -19.91 -0.12 -5.01 16 3 C 0.02 0.32 9.51 22.47 0.21 0.53 16 4 C -0.16 -3.90 5.75 -21.19 -0.12 -4.02 16 5 C 0.30 7.55 15.37 88.33 1.36 8.91 16 6 N -0.48 -14.01 18.54 19.00 0.35 -13.66 16 7 C 0.20 5.22 10.92 85.06 0.93 6.15 16 8 N -0.54 -17.77 8.92 -192.12 -1.71 -19.48 16 9 C 0.45 14.18 6.31 133.12 0.84 15.03 16 10 N -0.63 -21.20 3.16 -184.74 -0.58 -21.78 16 11 C 0.39 15.02 5.40 38.99 0.21 15.23 16 12 C -0.36 -13.87 7.49 23.08 0.17 -13.70 16 13 H 0.10 3.98 7.24 -2.91 -0.02 3.96 16 14 C 0.05 1.85 5.35 85.56 0.46 2.31 16 15 N -0.73 -23.99 11.24 21.98 0.25 -23.74 16 16 Si 0.98 28.31 29.57 68.60 2.03 30.34 16 17 H -0.26 -7.61 7.11 99.48 0.71 -6.90 16 18 H -0.26 -7.05 7.11 99.48 0.71 -6.34 16 19 H -0.26 -7.99 7.11 99.48 0.71 -7.28 16 20 C -0.32 -13.54 5.88 -20.07 -0.12 -13.66 16 21 C 0.33 14.90 14.03 88.33 1.24 16.14 16 22 N -0.56 -26.33 18.54 19.01 0.35 -25.97 16 23 C 0.32 13.55 14.80 88.35 1.31 14.86 16 24 N -0.55 -24.46 18.53 18.99 0.35 -24.11 16 25 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.06 1.36 6.61 -2.39 -0.02 1.35 16 27 H 0.09 1.33 8.09 -2.39 -0.02 1.31 16 28 H 0.17 2.46 8.06 -2.91 -0.02 2.43 16 29 H 0.18 3.81 8.06 -2.91 -0.02 3.79 16 30 H 0.41 12.98 6.79 -92.71 -0.63 12.35 16 31 H 0.31 9.07 8.29 -92.71 -0.77 8.30 16 Total: -1.00 -51.30 307.32 8.68 -42.62 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: 0.60 Total: 14.31 kcal Atomic # 6 Polarization: 34.44 SS G_CDS: 7.05 Total: 41.49 kcal Atomic # 7 Polarization: -127.75 SS G_CDS: -0.99 Total: -128.75 kcal Atomic # 14 Polarization: 28.31 SS G_CDS: 2.03 Total: 30.34 kcal Total: -51.30 8.68 -42.62 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169081069.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.815 kcal (2) G-P(sol) polarization free energy of solvation -51.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds