Wall clock time and date at job start Wed Apr 15 2020 11:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.39679 * 120.53765 * 2 1 4 4 C 1.43197 * 120.89120 * 359.97438 * 3 2 1 5 5 N 3.49693 * 81.47457 * 359.97438 * 2 1 3 6 6 C 1.40083 * 118.21323 * 180.02562 * 3 2 1 7 7 C 1.37940 * 119.16127 * 0.02562 * 6 3 2 8 8 N 1.31906 * 121.00009 * 359.73613 * 7 6 3 9 9 C 1.32390 * 121.97250 * 0.53683 * 8 7 6 10 10 N 1.39183 * 119.63838 * 179.74892 * 9 8 7 11 11 C 1.38381 * 120.00039 * 354.51405 * 10 9 8 12 12 C 1.38973 * 119.99736 * 301.13677 * 11 10 9 13 13 H 1.08001 * 119.99504 * 158.13973 * 12 11 10 14 14 C 1.40840 * 120.00205 * 338.13675 * 12 11 10 15 15 N 1.30336 * 120.00178 * 347.08958 * 14 12 11 16 16 Si 1.86800 * 120.00216 * 167.08639 * 14 12 11 17 17 H 1.48500 * 109.46994 * 60.00084 * 16 14 12 18 18 H 1.48495 * 109.47455 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.46943 * 300.00328 * 16 14 12 20 20 C 1.41143 * 120.00022 * 121.41249 * 11 10 9 21 21 C 1.43199 * 119.99937 * 4.12131 * 20 11 10 22 22 N 5.19141 * 78.66149 * 145.70069 * 2 1 3 23 23 C 1.43196 * 119.99931 * 184.11612 * 20 11 10 24 24 N 7.05487 * 106.41623 * 173.38004 * 2 1 3 25 25 H 1.08992 * 109.47768 * 269.97755 * 1 2 3 26 26 H 1.08996 * 109.47270 * 29.98097 * 1 2 3 27 27 H 1.09001 * 109.47268 * 149.97789 * 1 2 3 28 28 H 1.08007 * 120.41618 * 180.02562 * 6 3 2 29 29 H 1.08003 * 119.50034 * 179.97438 * 7 6 3 30 30 H 0.97003 * 120.00228 * 174.51649 * 10 9 8 31 31 H 0.96994 * 119.99966 * 185.06511 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2167 1.2030 0.0000 4 6 1.5318 2.4606 -0.0005 5 7 0.9885 3.4583 -0.0015 6 6 3.6163 1.1462 -0.0006 7 6 4.2391 -0.0846 -0.0016 8 7 3.5369 -1.2012 0.0031 9 6 2.2130 -1.1969 -0.0015 10 7 1.5207 -2.4043 -0.0015 11 6 2.2119 -3.5981 -0.1112 12 6 3.0139 -3.8372 -1.2207 13 1 3.8084 -4.5667 -1.1655 14 6 2.7906 -3.1282 -2.4170 15 7 1.6938 -2.4415 -2.5726 16 14 4.0664 -3.1721 -3.7808 17 1 4.2662 -4.5743 -4.2268 18 1 3.5958 -2.3515 -4.9255 19 1 5.3511 -2.6258 -3.2745 20 6 2.0976 -4.5753 0.9008 21 6 1.1993 -4.3695 1.9967 22 7 0.4863 -4.2050 2.8683 23 6 2.8801 -5.7726 0.8315 24 7 3.5007 -6.7222 0.7802 25 1 -0.3634 -0.0004 1.0275 26 1 -0.3633 0.8901 -0.5135 27 1 -0.3634 -0.8898 -0.5142 28 1 4.2005 2.0547 -0.0002 29 1 5.3179 -0.1348 -0.0025 30 1 0.5538 -2.4090 0.0755 31 1 1.5059 -2.0138 -3.4226 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169081084.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:20 Heat of formation + Delta-G solvation = 123.967999 kcal Electronic energy + Delta-G solvation = -20210.755518 eV Core-core repulsion = 17071.429587 eV Total energy + Delta-G solvation = -3139.325931 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.081 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.31809 -37.48470 -36.49703 -35.23361 -34.69491 -33.90563 -33.23588 -31.58264 -29.24297 -27.24141 -27.05198 -24.28138 -21.97036 -21.55228 -19.58688 -18.29898 -17.48131 -16.83623 -16.13381 -15.75111 -15.05552 -14.85373 -14.55536 -13.82244 -13.77987 -13.21725 -12.94364 -12.86191 -12.78427 -12.61626 -12.56626 -12.31142 -12.22890 -11.77539 -11.65786 -11.56766 -11.51466 -11.42164 -11.07894 -10.89389 -10.80226 -10.14908 -10.01995 -9.28986 -9.10742 -8.24924 -7.80932 -7.01516 -5.39240 0.90734 1.51497 2.21571 2.61552 2.70202 2.73085 2.88948 3.20406 3.39586 3.60843 3.86558 3.93155 4.06207 4.18964 4.28437 4.35050 4.83910 4.98756 5.11801 5.22161 5.40416 5.60339 5.64849 5.69811 5.74146 6.01400 6.17900 6.21469 6.30093 6.36663 6.66631 7.07381 7.28570 7.42817 7.56234 7.74131 7.96689 8.24863 8.68475 8.97045 9.15309 9.18809 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.013963 B = 0.007620 C = 0.005788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.758456 B = 3673.461719 C = 4836.047554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.151 4.151 3 C 0.042 3.958 4 C 0.268 3.732 5 N -0.422 5.422 6 C -0.203 4.203 7 C 0.148 3.852 8 N -0.496 5.496 9 C 0.448 3.552 10 N -0.635 5.635 11 C 0.387 3.613 12 C -0.350 4.350 13 H 0.110 0.890 14 C 0.079 3.921 15 N -0.729 5.729 16 Si 0.922 3.078 17 H -0.254 1.254 18 H -0.271 1.271 19 H -0.248 1.248 20 C -0.314 4.314 21 C 0.309 3.691 22 N -0.539 5.539 23 C 0.327 3.673 24 N -0.536 5.536 25 H 0.071 0.929 26 H 0.063 0.937 27 H 0.079 0.921 28 H 0.133 0.867 29 H 0.160 0.840 30 H 0.410 0.590 31 H 0.302 0.698 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.326 8.702 -5.148 10.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.161 4.161 3 C 0.031 3.969 4 C -0.047 4.047 5 N -0.098 5.098 6 C -0.229 4.229 7 C -0.012 4.012 8 N -0.212 5.212 9 C 0.211 3.789 10 N -0.259 5.259 11 C 0.284 3.716 12 C -0.378 4.378 13 H 0.128 0.872 14 C -0.152 4.152 15 N -0.348 5.348 16 Si 0.743 3.257 17 H -0.178 1.178 18 H -0.196 1.196 19 H -0.172 1.172 20 C -0.333 4.333 21 C 0.002 3.998 22 N -0.221 5.221 23 C 0.020 3.980 24 N -0.218 5.218 25 H 0.090 0.910 26 H 0.082 0.918 27 H 0.098 0.902 28 H 0.151 0.849 29 H 0.177 0.823 30 H 0.249 0.751 31 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 1.691 8.291 -4.013 9.365 hybrid contribution -0.108 0.854 -1.047 1.356 sum 1.584 9.145 -5.061 10.571 Atomic orbital electron populations 1.20661 0.90232 1.03360 1.02418 1.20032 0.96910 0.90935 1.08265 1.15772 0.92455 0.85745 1.02941 1.25571 0.92926 0.92638 0.93561 1.81211 1.08687 1.11323 1.08577 1.21719 0.92250 1.00077 1.08843 1.22375 0.99913 0.86118 0.92770 1.67284 1.05929 1.31225 1.16757 1.17620 0.87757 0.84738 0.88806 1.41455 1.08414 1.01503 1.74486 1.16594 0.85257 0.81170 0.88628 1.20135 1.11589 1.13502 0.92536 0.87172 1.26461 0.96182 0.91132 1.01391 1.69434 1.21247 1.17252 1.26854 0.86035 0.81018 0.80646 0.77955 1.17756 1.19558 1.17165 1.12851 1.19054 0.98423 1.02931 1.25311 0.91240 0.91945 0.91296 1.81159 1.16934 1.10903 1.13144 1.24633 0.90961 0.90940 0.91507 1.81037 1.15841 1.13385 1.11563 0.91016 0.91848 0.90213 0.84904 0.82296 0.75089 0.88649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.41 9.17 36.00 0.33 -1.08 16 2 C -0.15 -2.20 5.95 -103.82 -0.62 -2.82 16 3 C 0.04 0.56 5.75 -106.74 -0.61 -0.05 16 4 C 0.27 3.69 13.98 -22.48 -0.31 3.37 16 5 N -0.42 -6.36 18.54 41.84 0.78 -5.59 16 6 C -0.20 -2.42 9.85 -39.00 -0.38 -2.81 16 7 C 0.15 1.94 11.16 -17.63 -0.20 1.74 16 8 N -0.50 -8.30 8.79 -12.47 -0.11 -8.41 16 9 C 0.45 7.46 5.97 -154.92 -0.93 6.53 16 10 N -0.63 -11.24 3.24 -9.77 -0.03 -11.27 16 11 C 0.39 7.66 5.46 -83.53 -0.46 7.21 16 12 C -0.35 -6.88 7.73 -38.33 -0.30 -7.18 16 13 H 0.11 2.24 7.05 -52.49 -0.37 1.87 16 14 C 0.08 1.42 4.86 -17.20 -0.08 1.33 16 15 N -0.73 -12.77 11.26 55.60 0.63 -12.15 16 16 Si 0.92 14.31 29.59 -169.99 -5.03 9.28 16 17 H -0.25 -4.05 7.11 56.52 0.40 -3.65 16 18 H -0.27 -4.10 7.11 56.52 0.40 -3.70 16 19 H -0.25 -3.89 7.11 56.52 0.40 -3.49 16 20 C -0.31 -6.67 5.88 -104.95 -0.62 -7.29 16 21 C 0.31 6.74 14.80 -22.41 -0.33 6.41 16 22 N -0.54 -12.23 18.55 41.92 0.78 -11.46 16 23 C 0.33 7.37 13.91 -22.49 -0.31 7.05 16 24 N -0.54 -12.58 18.53 41.82 0.78 -11.80 16 25 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 26 H 0.06 0.78 7.17 -51.93 -0.37 0.40 16 27 H 0.08 1.02 6.65 -51.93 -0.35 0.67 16 28 H 0.13 1.22 8.06 -52.48 -0.42 0.80 16 29 H 0.16 1.59 8.06 -52.48 -0.42 1.17 16 30 H 0.41 6.83 6.83 -40.82 -0.28 6.56 16 31 H 0.30 4.87 8.29 -40.82 -0.34 4.53 16 LS Contribution 304.58 15.07 4.59 4.59 Total: -1.00 -24.54 304.58 -4.22 -28.76 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -1.77 Total: 5.61 kcal Atomic # 6 Polarization: 17.25 SS G_CDS: -4.82 Total: 12.43 kcal Atomic # 7 Polarization: -63.49 SS G_CDS: 2.81 Total: -60.67 kcal Atomic # 14 Polarization: 14.31 SS G_CDS: -5.03 Total: 9.28 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -24.54 -4.22 -28.76 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169081084.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.726 kcal (2) G-P(sol) polarization free energy of solvation -24.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds