Wall clock time and date at job start Wed Apr 15 2020 11:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.39679 * 120.53765 * 2 1 4 4 C 1.43197 * 120.89120 * 359.97438 * 3 2 1 5 5 N 3.49693 * 81.47457 * 359.97438 * 2 1 3 6 6 C 1.40083 * 118.21323 * 180.02562 * 3 2 1 7 7 C 1.37940 * 119.16127 * 0.02562 * 6 3 2 8 8 N 1.31906 * 121.00009 * 359.73613 * 7 6 3 9 9 C 1.32390 * 121.97250 * 0.53683 * 8 7 6 10 10 N 1.39183 * 119.63838 * 179.74892 * 9 8 7 11 11 C 1.38381 * 120.00039 * 354.51405 * 10 9 8 12 12 C 1.38973 * 119.99736 * 301.13677 * 11 10 9 13 13 H 1.08001 * 119.99504 * 158.13973 * 12 11 10 14 14 C 1.40840 * 120.00205 * 338.13675 * 12 11 10 15 15 N 1.30336 * 120.00178 * 347.08958 * 14 12 11 16 16 Si 1.86800 * 120.00216 * 167.08639 * 14 12 11 17 17 H 1.48500 * 109.46994 * 60.00084 * 16 14 12 18 18 H 1.48495 * 109.47455 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.46943 * 300.00328 * 16 14 12 20 20 C 1.41143 * 120.00022 * 121.41249 * 11 10 9 21 21 C 1.43199 * 119.99937 * 4.12131 * 20 11 10 22 22 N 5.19141 * 78.66149 * 145.70069 * 2 1 3 23 23 C 1.43196 * 119.99931 * 184.11612 * 20 11 10 24 24 N 7.05487 * 106.41623 * 173.38004 * 2 1 3 25 25 H 1.08992 * 109.47768 * 269.97755 * 1 2 3 26 26 H 1.08996 * 109.47270 * 29.98097 * 1 2 3 27 27 H 1.09001 * 109.47268 * 149.97789 * 1 2 3 28 28 H 1.08007 * 120.41618 * 180.02562 * 6 3 2 29 29 H 1.08003 * 119.50034 * 179.97438 * 7 6 3 30 30 H 0.97003 * 120.00228 * 174.51649 * 10 9 8 31 31 H 0.96994 * 119.99966 * 185.06511 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2167 1.2030 0.0000 4 6 1.5318 2.4606 -0.0005 5 7 0.9885 3.4583 -0.0015 6 6 3.6163 1.1462 -0.0006 7 6 4.2391 -0.0846 -0.0016 8 7 3.5369 -1.2012 0.0031 9 6 2.2130 -1.1969 -0.0015 10 7 1.5207 -2.4043 -0.0015 11 6 2.2119 -3.5981 -0.1112 12 6 3.0139 -3.8372 -1.2207 13 1 3.8084 -4.5667 -1.1655 14 6 2.7906 -3.1282 -2.4170 15 7 1.6938 -2.4415 -2.5726 16 14 4.0664 -3.1721 -3.7808 17 1 4.2662 -4.5743 -4.2268 18 1 3.5958 -2.3515 -4.9255 19 1 5.3511 -2.6258 -3.2745 20 6 2.0976 -4.5753 0.9008 21 6 1.1993 -4.3695 1.9967 22 7 0.4863 -4.2050 2.8683 23 6 2.8801 -5.7726 0.8315 24 7 3.5007 -6.7222 0.7802 25 1 -0.3634 -0.0004 1.0275 26 1 -0.3633 0.8901 -0.5135 27 1 -0.3634 -0.8898 -0.5142 28 1 4.2005 2.0547 -0.0002 29 1 5.3179 -0.1348 -0.0025 30 1 0.5538 -2.4090 0.0755 31 1 1.5059 -2.0138 -3.4226 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169081084.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:19 Heat of formation + Delta-G solvation = 113.105538 kcal Electronic energy + Delta-G solvation = -20211.226550 eV Core-core repulsion = 17071.429587 eV Total energy + Delta-G solvation = -3139.796963 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.081 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.46695 -38.85981 -37.70725 -36.85138 -36.44230 -35.22263 -34.40715 -32.92505 -30.54280 -28.69660 -28.22489 -25.46462 -23.19214 -22.85105 -21.00943 -19.61402 -18.92936 -18.22709 -17.49557 -16.96068 -16.18149 -16.04239 -15.71340 -15.11643 -14.86964 -14.51744 -14.40555 -14.25633 -14.04311 -13.95590 -13.81876 -13.65273 -13.41944 -13.30813 -13.26575 -13.09558 -13.01823 -12.62574 -12.61818 -12.44280 -12.06570 -11.50392 -11.32954 -10.42966 -10.24539 -9.68068 -9.17069 -8.31394 -6.99782 -0.18714 0.36866 0.85865 1.42643 1.51074 1.52382 1.62756 2.09332 2.10208 2.14606 2.28885 2.31749 2.63653 2.74965 2.84635 3.13222 3.51831 3.75394 3.92571 3.96737 4.08881 4.35393 4.64606 4.68074 4.70898 4.73793 4.79186 4.96346 5.17209 5.27138 5.48737 5.58854 5.89155 6.12028 6.28886 6.34481 6.64149 6.83172 7.26967 7.40781 7.51459 7.79497 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.013963 B = 0.007620 C = 0.005788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.758456 B = 3673.461719 C = 4836.047554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.155 4.155 3 C 0.037 3.963 4 C 0.286 3.714 5 N -0.444 5.444 6 C -0.179 4.179 7 C 0.141 3.859 8 N -0.526 5.526 9 C 0.426 3.574 10 N -0.640 5.640 11 C 0.385 3.615 12 C -0.350 4.350 13 H 0.098 0.902 14 C 0.059 3.941 15 N -0.724 5.724 16 Si 0.969 3.031 17 H -0.262 1.262 18 H -0.259 1.259 19 H -0.248 1.248 20 C -0.331 4.331 21 C 0.317 3.683 22 N -0.562 5.562 23 C 0.331 3.669 24 N -0.563 5.563 25 H 0.075 0.925 26 H 0.068 0.932 27 H 0.077 0.923 28 H 0.168 0.832 29 H 0.191 0.809 30 H 0.411 0.589 31 H 0.312 0.688 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.217 10.601 -6.427 12.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.165 4.165 3 C 0.026 3.974 4 C -0.029 4.029 5 N -0.120 5.120 6 C -0.204 4.204 7 C -0.018 4.018 8 N -0.242 5.242 9 C 0.191 3.809 10 N -0.265 5.265 11 C 0.281 3.719 12 C -0.376 4.376 13 H 0.116 0.884 14 C -0.173 4.173 15 N -0.342 5.342 16 Si 0.788 3.212 17 H -0.187 1.187 18 H -0.183 1.183 19 H -0.172 1.172 20 C -0.351 4.351 21 C 0.011 3.989 22 N -0.246 5.246 23 C 0.025 3.975 24 N -0.247 5.247 25 H 0.094 0.906 26 H 0.087 0.913 27 H 0.096 0.904 28 H 0.185 0.815 29 H 0.208 0.792 30 H 0.250 0.750 31 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 2.569 10.229 -5.283 11.796 hybrid contribution -0.331 0.410 -0.742 0.910 sum 2.238 10.639 -6.025 12.429 Atomic orbital electron populations 1.20644 0.89455 1.03479 1.02731 1.20123 0.97595 0.90708 1.08107 1.15858 0.93179 0.85112 1.03283 1.25467 0.92341 0.92276 0.92811 1.81243 1.09276 1.12092 1.09435 1.22099 0.91695 1.01063 1.05496 1.22949 1.01237 0.85589 0.92037 1.67246 1.06276 1.33292 1.17338 1.17731 0.88072 0.84716 0.90371 1.41352 1.08379 1.01261 1.75545 1.16538 0.85634 0.81666 0.88103 1.20238 1.10997 1.13188 0.93225 0.88365 1.26869 0.97407 0.90947 1.02049 1.69414 1.21287 1.15878 1.27610 0.85350 0.79306 0.80184 0.76323 1.18654 1.18289 1.17197 1.12976 1.19653 0.98774 1.03682 1.25386 0.90979 0.91416 0.91084 1.81143 1.17904 1.11689 1.13826 1.24872 0.90715 0.90964 0.90952 1.81014 1.17022 1.14175 1.12492 0.90626 0.91301 0.90417 0.81450 0.79239 0.74979 0.87593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.60 9.17 71.23 0.65 -1.95 16 2 C -0.16 -4.28 5.95 -19.34 -0.12 -4.40 16 3 C 0.04 0.89 5.75 -21.24 -0.12 0.77 16 4 C 0.29 7.16 13.98 88.33 1.24 8.40 16 5 N -0.44 -12.49 18.54 19.00 0.35 -12.13 16 6 C -0.18 -3.61 9.85 22.65 0.22 -3.38 16 7 C 0.14 3.26 11.16 84.61 0.94 4.20 16 8 N -0.53 -16.69 8.79 -193.37 -1.70 -18.39 16 9 C 0.43 13.71 5.97 132.96 0.79 14.50 16 10 N -0.64 -22.47 3.24 -184.81 -0.60 -23.07 16 11 C 0.38 15.25 5.46 39.00 0.21 15.47 16 12 C -0.35 -13.59 7.73 23.08 0.18 -13.41 16 13 H 0.10 4.02 7.05 -2.91 -0.02 4.00 16 14 C 0.06 2.01 4.86 85.55 0.42 2.42 16 15 N -0.72 -24.15 11.26 21.98 0.25 -23.90 16 16 Si 0.97 27.55 29.59 68.60 2.03 29.58 16 17 H -0.26 -7.82 7.11 99.48 0.71 -7.11 16 18 H -0.26 -6.86 7.11 99.48 0.71 -6.15 16 19 H -0.25 -7.07 7.11 99.48 0.71 -6.36 16 20 C -0.33 -14.29 5.88 -20.07 -0.12 -14.41 16 21 C 0.32 14.03 14.80 88.31 1.31 15.34 16 22 N -0.56 -25.79 18.55 19.03 0.35 -25.44 16 23 C 0.33 15.16 13.91 88.34 1.23 16.39 16 24 N -0.56 -26.85 18.53 19.00 0.35 -26.50 16 25 H 0.08 1.78 8.14 -2.39 -0.02 1.77 16 26 H 0.07 1.59 7.17 -2.39 -0.02 1.57 16 27 H 0.08 1.93 6.65 -2.39 -0.02 1.91 16 28 H 0.17 2.23 8.06 -2.91 -0.02 2.21 16 29 H 0.19 3.08 8.06 -2.91 -0.02 3.05 16 30 H 0.41 13.74 6.83 -92.71 -0.63 13.10 16 31 H 0.31 9.34 8.29 -92.71 -0.77 8.57 16 Total: -1.00 -51.82 304.58 8.47 -43.35 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: 0.60 Total: 16.57 kcal Atomic # 6 Polarization: 33.11 SS G_CDS: 6.84 Total: 39.95 kcal Atomic # 7 Polarization: -128.44 SS G_CDS: -0.99 Total: -129.44 kcal Atomic # 14 Polarization: 27.55 SS G_CDS: 2.03 Total: 29.58 kcal Total: -51.82 8.47 -43.35 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169081084.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.454 kcal (2) G-P(sol) polarization free energy of solvation -51.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds