Wall clock time and date at job start Wed Apr 15 2020 11:43:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38384 * 120.78211 * 2 1 4 4 C 1.38634 * 119.49116 * 179.97438 * 3 2 1 5 5 N 1.31489 * 121.11955 * 359.97438 * 4 3 2 6 6 C 1.32865 * 121.69177 * 359.74988 * 5 4 3 7 7 C 1.43198 * 119.80741 * 180.28778 * 6 5 4 8 8 N 4.80924 * 136.08714 * 179.66727 * 2 1 3 9 9 C 1.39372 * 120.77688 * 179.97438 * 2 1 3 10 10 N 1.39148 * 120.56572 * 0.02562 * 9 2 1 11 11 C 1.38341 * 119.99658 * 155.47255 * 10 9 2 12 12 C 1.38981 * 120.00190 * 302.94162 * 11 10 9 13 13 H 1.08001 * 120.00185 * 144.17229 * 12 11 10 14 14 C 1.40844 * 119.99889 * 324.44417 * 12 11 10 15 15 N 1.30330 * 119.99908 * 173.53374 * 14 12 11 16 16 Si 1.86805 * 120.00109 * 353.53830 * 14 12 11 17 17 H 1.48495 * 109.47199 * 95.51556 * 16 14 12 18 18 H 1.48507 * 109.46939 * 215.51591 * 16 14 12 19 19 H 1.48497 * 109.46880 * 335.51405 * 16 14 12 20 20 C 1.41153 * 119.99910 * 122.94826 * 11 10 9 21 21 C 1.43204 * 120.00133 * 3.74689 * 20 11 10 22 22 N 5.43126 * 87.98992 * 150.39841 * 2 1 3 23 23 C 1.43204 * 120.00386 * 183.75231 * 20 11 10 24 24 N 7.07688 * 107.32655 * 184.67862 * 2 1 3 25 25 H 1.09001 * 109.47350 * 270.02353 * 1 2 3 26 26 H 1.09003 * 109.46669 * 30.02316 * 1 2 3 27 27 H 1.08997 * 109.47340 * 150.01798 * 1 2 3 28 28 H 1.08007 * 120.25479 * 359.95551 * 3 2 1 29 29 H 1.08004 * 119.44038 * 180.02562 * 4 3 2 30 30 H 0.96999 * 119.99596 * 335.47328 * 10 9 2 31 31 H 0.97006 * 120.00074 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2153 1.1889 0.0000 4 6 3.6013 1.1576 0.0005 5 7 4.2553 0.0170 0.0016 6 6 3.6217 -1.1509 0.0070 7 6 4.3745 -2.3690 0.0142 8 7 4.9716 -3.3355 0.0194 9 6 2.2202 -1.1974 0.0005 10 7 1.5529 -2.4185 0.0005 11 6 2.1779 -3.5482 -0.4963 12 6 2.6573 -3.5602 -1.8008 13 1 3.5708 -4.0865 -2.0356 14 6 1.9551 -2.8813 -2.8154 15 7 2.4671 -2.7854 -4.0101 16 14 0.2898 -2.1183 -2.4489 17 1 0.4661 -0.6821 -2.1152 18 1 -0.5863 -2.2456 -3.6412 19 1 -0.3341 -2.8207 -1.2989 20 6 2.3285 -4.6888 0.3215 21 6 1.7641 -4.7058 1.6375 22 7 1.3165 -4.7195 2.6812 23 6 3.0457 -5.8289 -0.1647 24 7 3.6147 -6.7332 -0.5510 25 1 -0.3634 0.0004 1.0277 26 1 -0.3633 0.8898 -0.5142 27 1 -0.3634 -0.8901 -0.5135 28 1 1.6922 2.1339 -0.0007 29 1 4.1532 2.0860 0.0010 30 1 0.6496 -2.4774 0.3489 31 1 1.9836 -2.3174 -4.7089 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169082018.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:24 Heat of formation + Delta-G solvation = 145.214091 kcal Electronic energy + Delta-G solvation = -20949.072972 eV Core-core repulsion = 17810.668340 eV Total energy + Delta-G solvation = -3138.404632 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.081 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.72925 -37.87484 -35.75478 -35.50851 -34.81552 -34.30980 -33.43572 -31.48169 -29.18995 -27.84275 -27.39766 -24.30998 -22.43863 -21.39423 -19.30503 -18.40000 -17.80624 -17.54791 -16.57465 -16.24851 -15.41055 -14.91373 -14.73293 -13.80099 -13.51886 -13.28975 -12.98330 -12.88252 -12.83339 -12.61958 -12.48572 -12.14329 -11.98908 -11.80673 -11.76683 -11.66718 -11.58237 -11.45275 -11.20536 -11.04855 -10.62331 -10.32053 -9.83990 -9.54773 -9.23474 -8.44301 -7.77171 -7.31838 -5.50216 0.88838 1.28911 1.90589 2.51502 2.67232 2.69766 3.25497 3.30309 3.36469 3.48291 3.71319 3.95924 4.03583 4.14906 4.26976 4.37018 4.68719 4.82804 4.94436 5.05186 5.26152 5.30162 5.39134 5.44398 5.50028 5.78405 5.95670 6.07345 6.15944 6.32608 6.47733 6.87837 7.06770 7.45428 7.55472 7.70611 7.98821 8.02043 8.26345 8.75850 9.09288 9.17722 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.014539 B = 0.009473 C = 0.008493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.430359 B = 2954.991046 C = 3296.055565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.103 4.103 3 C -0.116 4.116 4 C 0.060 3.940 5 N -0.426 5.426 6 C 0.162 3.838 7 C 0.263 3.737 8 N -0.373 5.373 9 C 0.207 3.793 10 N -0.681 5.681 11 C 0.333 3.667 12 C -0.369 4.369 13 H 0.124 0.876 14 C 0.073 3.927 15 N -0.731 5.731 16 Si 0.912 3.088 17 H -0.233 1.233 18 H -0.280 1.280 19 H -0.251 1.251 20 C -0.278 4.278 21 C 0.305 3.695 22 N -0.522 5.522 23 C 0.325 3.675 24 N -0.512 5.512 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.065 0.935 28 H 0.140 0.860 29 H 0.162 0.838 30 H 0.407 0.593 31 H 0.304 0.696 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.867 15.200 0.002 16.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.115 4.115 3 C -0.137 4.137 4 C -0.102 4.102 5 N -0.136 5.136 6 C 0.020 3.980 7 C -0.053 4.053 8 N -0.050 5.050 9 C 0.100 3.900 10 N -0.308 5.308 11 C 0.230 3.770 12 C -0.398 4.398 13 H 0.142 0.858 14 C -0.157 4.157 15 N -0.350 5.350 16 Si 0.736 3.264 17 H -0.157 1.157 18 H -0.207 1.207 19 H -0.175 1.175 20 C -0.296 4.296 21 C -0.003 4.003 22 N -0.204 5.204 23 C 0.015 3.985 24 N -0.193 5.193 25 H 0.095 0.905 26 H 0.097 0.903 27 H 0.083 0.917 28 H 0.158 0.842 29 H 0.179 0.821 30 H 0.246 0.754 31 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.688 12.249 0.669 13.132 hybrid contribution -2.149 1.022 -0.337 2.404 sum -6.837 13.271 0.332 14.932 Atomic orbital electron populations 1.21034 0.90101 1.03542 1.02826 1.19847 0.96702 0.91164 1.03741 1.21955 0.95310 0.97778 0.98704 1.22469 0.91435 0.95405 1.00885 1.67421 1.40209 0.97045 1.08950 1.16007 0.86756 0.87992 1.07282 1.24317 0.93916 0.92105 0.95004 1.81178 1.08252 1.09039 1.06559 1.18279 0.90928 0.85801 0.95038 1.42295 1.18351 1.05339 1.64831 1.16987 0.85885 0.83189 0.90933 1.20117 1.08580 1.21783 0.89278 0.85828 1.26658 1.01688 0.93000 0.94341 1.69378 1.37786 1.24913 1.02902 0.86597 0.79113 0.81527 0.79158 1.15665 1.20716 1.17529 1.12935 1.30046 0.94824 0.91802 1.25189 0.91253 0.92409 0.91447 1.81063 1.17445 1.09469 1.12442 1.24438 0.90853 0.91100 0.92087 1.81040 1.15950 1.12670 1.09656 0.90453 0.90302 0.91681 0.84229 0.82106 0.75368 0.88402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.18 8.22 36.01 0.30 -0.88 16 2 C -0.10 -1.28 4.91 -104.14 -0.51 -1.79 16 3 C -0.12 -1.20 9.80 -39.38 -0.39 -1.59 16 4 C 0.06 0.71 11.17 -17.55 -0.20 0.51 16 5 N -0.43 -6.82 10.27 -10.93 -0.11 -6.93 16 6 C 0.16 2.89 6.45 -84.75 -0.55 2.35 16 7 C 0.26 5.48 11.30 -22.47 -0.25 5.23 16 8 N -0.37 -8.51 16.46 41.84 0.69 -7.82 16 9 C 0.21 3.32 5.00 -83.37 -0.42 2.90 16 10 N -0.68 -11.74 2.11 -7.89 -0.02 -11.75 16 11 C 0.33 6.80 2.77 -83.55 -0.23 6.57 16 12 C -0.37 -8.12 6.58 -38.32 -0.25 -8.37 16 13 H 0.12 3.14 7.22 -52.49 -0.38 2.76 16 14 C 0.07 1.49 5.45 -17.20 -0.09 1.40 16 15 N -0.73 -15.47 13.90 55.60 0.77 -14.70 16 16 Si 0.91 14.70 21.85 -169.99 -3.72 10.98 16 17 H -0.23 -3.23 4.54 56.52 0.26 -2.97 16 18 H -0.28 -4.60 7.11 56.52 0.40 -4.20 16 19 H -0.25 -3.88 5.83 56.52 0.33 -3.55 16 20 C -0.28 -6.18 4.96 -104.94 -0.52 -6.70 16 21 C 0.30 6.73 14.77 -22.48 -0.33 6.40 16 22 N -0.52 -11.78 18.54 41.83 0.78 -11.01 16 23 C 0.32 7.92 13.75 -22.47 -0.31 7.61 16 24 N -0.51 -13.11 18.54 41.84 0.78 -12.33 16 25 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.08 0.61 8.10 -51.93 -0.42 0.19 16 27 H 0.06 0.72 3.34 -51.93 -0.17 0.55 16 28 H 0.14 0.91 8.06 -52.48 -0.42 0.49 16 29 H 0.16 1.30 8.06 -52.48 -0.42 0.88 16 30 H 0.41 6.27 6.45 -40.82 -0.26 6.01 16 31 H 0.30 5.62 8.29 -40.82 -0.34 5.29 16 LS Contribution 281.93 15.07 4.25 4.25 Total: -1.00 -27.83 281.93 -2.19 -30.02 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -1.86 Total: 5.66 kcal Atomic # 6 Polarization: 17.39 SS G_CDS: -3.75 Total: 13.64 kcal Atomic # 7 Polarization: -67.42 SS G_CDS: 2.88 Total: -64.54 kcal Atomic # 14 Polarization: 14.70 SS G_CDS: -3.72 Total: 10.98 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -27.83 -2.19 -30.02 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169082018.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.231 kcal (2) G-P(sol) polarization free energy of solvation -27.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 147.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 145.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds