Wall clock time and date at job start Wed Apr 15 2020 11:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38384 * 120.78211 * 2 1 4 4 C 1.38634 * 119.49116 * 179.97438 * 3 2 1 5 5 N 1.31489 * 121.11955 * 359.97438 * 4 3 2 6 6 C 1.32865 * 121.69177 * 359.74988 * 5 4 3 7 7 C 1.43198 * 119.80741 * 180.28778 * 6 5 4 8 8 N 4.80924 * 136.08714 * 179.66727 * 2 1 3 9 9 C 1.39372 * 120.77688 * 179.97438 * 2 1 3 10 10 N 1.39148 * 120.56572 * 0.02562 * 9 2 1 11 11 C 1.38341 * 119.99658 * 155.47255 * 10 9 2 12 12 C 1.38981 * 120.00190 * 302.94162 * 11 10 9 13 13 H 1.08001 * 120.00185 * 144.17229 * 12 11 10 14 14 C 1.40844 * 119.99889 * 324.44417 * 12 11 10 15 15 N 1.30330 * 119.99908 * 173.53374 * 14 12 11 16 16 Si 1.86805 * 120.00109 * 353.53830 * 14 12 11 17 17 H 1.48495 * 109.47199 * 95.51556 * 16 14 12 18 18 H 1.48507 * 109.46939 * 215.51591 * 16 14 12 19 19 H 1.48497 * 109.46880 * 335.51405 * 16 14 12 20 20 C 1.41153 * 119.99910 * 122.94826 * 11 10 9 21 21 C 1.43204 * 120.00133 * 3.74689 * 20 11 10 22 22 N 5.43126 * 87.98992 * 150.39841 * 2 1 3 23 23 C 1.43204 * 120.00386 * 183.75231 * 20 11 10 24 24 N 7.07688 * 107.32655 * 184.67862 * 2 1 3 25 25 H 1.09001 * 109.47350 * 270.02353 * 1 2 3 26 26 H 1.09003 * 109.46669 * 30.02316 * 1 2 3 27 27 H 1.08997 * 109.47340 * 150.01798 * 1 2 3 28 28 H 1.08007 * 120.25479 * 359.95551 * 3 2 1 29 29 H 1.08004 * 119.44038 * 180.02562 * 4 3 2 30 30 H 0.96999 * 119.99596 * 335.47328 * 10 9 2 31 31 H 0.97006 * 120.00074 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2153 1.1889 0.0000 4 6 3.6013 1.1576 0.0005 5 7 4.2553 0.0170 0.0016 6 6 3.6217 -1.1509 0.0070 7 6 4.3745 -2.3690 0.0142 8 7 4.9716 -3.3355 0.0194 9 6 2.2202 -1.1974 0.0005 10 7 1.5529 -2.4185 0.0005 11 6 2.1779 -3.5482 -0.4963 12 6 2.6573 -3.5602 -1.8008 13 1 3.5708 -4.0865 -2.0356 14 6 1.9551 -2.8813 -2.8154 15 7 2.4671 -2.7854 -4.0101 16 14 0.2898 -2.1183 -2.4489 17 1 0.4661 -0.6821 -2.1152 18 1 -0.5863 -2.2456 -3.6412 19 1 -0.3341 -2.8207 -1.2989 20 6 2.3285 -4.6888 0.3215 21 6 1.7641 -4.7058 1.6375 22 7 1.3165 -4.7195 2.6812 23 6 3.0457 -5.8289 -0.1647 24 7 3.6147 -6.7332 -0.5510 25 1 -0.3634 0.0004 1.0277 26 1 -0.3633 0.8898 -0.5142 27 1 -0.3634 -0.8901 -0.5135 28 1 1.6922 2.1339 -0.0007 29 1 4.1532 2.0860 0.0010 30 1 0.6496 -2.4774 0.3489 31 1 1.9836 -2.3174 -4.7089 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169082018.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:22 Heat of formation + Delta-G solvation = 125.969669 kcal Electronic energy + Delta-G solvation = -20949.907473 eV Core-core repulsion = 17810.668340 eV Total energy + Delta-G solvation = -3139.239133 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.081 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.88699 -39.28400 -37.30011 -37.20869 -36.67475 -35.80107 -34.63927 -32.87373 -30.45053 -29.11420 -28.75576 -25.53455 -23.51104 -22.90441 -20.95082 -19.64395 -19.16196 -19.02847 -18.03434 -17.57030 -16.68276 -16.06073 -15.71050 -15.13863 -14.87914 -14.71178 -14.50645 -14.37754 -14.26303 -13.88574 -13.82414 -13.58792 -13.53044 -13.43184 -13.38232 -13.16444 -13.00571 -12.92417 -12.75029 -12.53221 -12.16203 -11.57856 -11.08700 -10.59544 -10.22067 -9.95565 -9.30288 -8.69528 -7.26531 -0.25095 0.12058 0.51444 1.18868 1.39567 1.48124 1.78163 1.90575 1.97138 2.04894 2.10390 2.12083 2.42810 2.56311 2.79387 3.07890 3.24519 3.58858 3.79670 3.84646 3.98415 4.26841 4.33885 4.44778 4.69348 4.73164 4.87375 4.93806 5.16774 5.24083 5.30846 5.45492 5.68155 5.77649 5.98705 6.31291 6.45720 6.70381 6.97816 7.01100 7.19627 7.68188 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.014539 B = 0.009473 C = 0.008493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.430359 B = 2954.991046 C = 3296.055565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.097 4.097 3 C -0.090 4.090 4 C 0.070 3.930 5 N -0.457 5.457 6 C 0.118 3.882 7 C 0.275 3.725 8 N -0.435 5.435 9 C 0.190 3.810 10 N -0.679 5.679 11 C 0.357 3.643 12 C -0.378 4.378 13 H 0.075 0.925 14 C 0.040 3.960 15 N -0.766 5.766 16 Si 0.957 3.043 17 H -0.188 1.188 18 H -0.281 1.281 19 H -0.242 1.242 20 C -0.299 4.299 21 C 0.313 3.687 22 N -0.530 5.530 23 C 0.327 3.673 24 N -0.551 5.551 25 H 0.098 0.902 26 H 0.113 0.887 27 H 0.053 0.947 28 H 0.196 0.804 29 H 0.202 0.798 30 H 0.418 0.582 31 H 0.317 0.683 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.963 20.041 0.407 22.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.108 4.108 3 C -0.111 4.111 4 C -0.094 4.094 5 N -0.168 5.168 6 C -0.021 4.021 7 C -0.041 4.041 8 N -0.113 5.113 9 C 0.084 3.916 10 N -0.309 5.309 11 C 0.252 3.748 12 C -0.407 4.407 13 H 0.093 0.907 14 C -0.187 4.187 15 N -0.385 5.385 16 Si 0.774 3.226 17 H -0.110 1.110 18 H -0.208 1.208 19 H -0.166 1.166 20 C -0.317 4.317 21 C 0.006 3.994 22 N -0.212 5.212 23 C 0.019 3.981 24 N -0.233 5.233 25 H 0.117 0.883 26 H 0.132 0.868 27 H 0.071 0.929 28 H 0.213 0.787 29 H 0.219 0.781 30 H 0.259 0.741 31 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -7.759 17.095 1.088 18.805 hybrid contribution -1.107 -0.256 -0.532 1.254 sum -8.865 16.839 0.555 19.038 Atomic orbital electron populations 1.21210 0.87571 1.04600 1.04687 1.20352 0.98438 0.90109 1.01925 1.22576 0.94627 0.99118 0.94744 1.23346 0.92921 0.95196 0.97907 1.67391 1.41478 0.97596 1.10331 1.16037 0.87469 0.87544 1.11057 1.25167 0.93089 0.92542 0.93296 1.81163 1.10069 1.10850 1.09237 1.18521 0.90308 0.86391 0.96344 1.42098 1.18713 1.04842 1.65223 1.16641 0.84847 0.83518 0.89750 1.19944 1.07646 1.22152 0.90931 0.90702 1.27613 1.05056 0.92603 0.93415 1.69392 1.39709 1.25470 1.03971 0.86112 0.73950 0.83228 0.79262 1.10959 1.20795 1.16618 1.13083 1.31060 0.95132 0.92429 1.25053 0.90952 0.92178 0.91197 1.81049 1.18035 1.09754 1.12384 1.24928 0.90492 0.91193 0.91452 1.80992 1.17570 1.14015 1.10770 0.88321 0.86822 0.92864 0.78671 0.78106 0.74079 0.87051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.60 8.22 71.24 0.59 -1.01 16 2 C -0.10 -1.87 4.91 -19.55 -0.10 -1.97 16 3 C -0.09 -1.23 9.80 22.40 0.22 -1.01 16 4 C 0.07 1.28 11.17 84.84 0.95 2.23 16 5 N -0.46 -13.76 10.27 -188.49 -1.94 -15.70 16 6 C 0.12 4.15 6.45 40.72 0.26 4.42 16 7 C 0.27 12.01 11.30 88.33 1.00 13.01 16 8 N -0.44 -21.36 16.46 19.00 0.31 -21.05 16 9 C 0.19 5.63 5.00 38.74 0.19 5.82 16 10 N -0.68 -22.39 2.11 -178.89 -0.38 -22.77 16 11 C 0.36 14.87 2.77 39.01 0.11 14.98 16 12 C -0.38 -17.36 6.58 23.09 0.15 -17.20 16 13 H 0.07 4.14 7.22 -2.91 -0.02 4.12 16 14 C 0.04 1.63 5.45 85.55 0.47 2.09 16 15 N -0.77 -32.94 13.90 21.98 0.31 -32.63 16 16 Si 0.96 27.60 21.85 68.60 1.50 29.10 16 17 H -0.19 -4.05 4.54 99.48 0.45 -3.60 16 18 H -0.28 -8.18 7.11 99.48 0.71 -7.48 16 19 H -0.24 -6.62 5.83 99.48 0.58 -6.04 16 20 C -0.30 -13.76 4.96 -20.07 -0.10 -13.86 16 21 C 0.31 14.03 14.77 88.34 1.30 15.33 16 22 N -0.53 -23.79 18.54 19.00 0.35 -23.44 16 23 C 0.33 16.92 13.75 88.33 1.21 18.13 16 24 N -0.55 -30.04 18.54 19.01 0.35 -29.68 16 25 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.11 0.75 8.10 -2.39 -0.02 0.73 16 27 H 0.05 0.85 3.34 -2.39 -0.01 0.84 16 28 H 0.20 0.62 8.06 -2.91 -0.02 0.59 16 29 H 0.20 1.98 8.06 -2.91 -0.02 1.96 16 30 H 0.42 11.81 6.45 -92.71 -0.60 11.21 16 31 H 0.32 11.65 8.29 -92.70 -0.77 10.88 16 Total: -1.00 -68.09 281.93 7.02 -61.07 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: 0.26 Total: 14.14 kcal Atomic # 6 Polarization: 34.70 SS G_CDS: 6.26 Total: 40.96 kcal Atomic # 7 Polarization: -144.28 SS G_CDS: -0.99 Total: -145.27 kcal Atomic # 14 Polarization: 27.60 SS G_CDS: 1.50 Total: 29.10 kcal Total: -68.09 7.02 -61.07 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169082018.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.036 kcal (2) G-P(sol) polarization free energy of solvation -68.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds