Wall clock time and date at job start Wed Apr 15 2020 11:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46020 * 2 1 4 4 O 1.42905 * 109.47079 * 59.96661 * 3 2 1 5 5 C 1.53046 * 109.45858 * 119.96575 * 2 1 3 6 6 C 1.53199 * 109.30890 * 58.64478 * 5 2 1 7 7 N 1.46931 * 108.77257 * 54.63459 * 6 5 2 8 8 S 1.65594 * 120.62916 * 126.41456 * 7 6 5 9 9 O 1.42099 * 106.40296 * 203.53576 * 8 7 6 10 10 O 1.42098 * 106.40155 * 336.45573 * 8 7 6 11 11 C 1.76204 * 107.22105 * 89.99668 * 8 7 6 12 12 H 1.07998 * 119.99754 * 0.02562 * 11 8 7 13 13 C 1.37875 * 119.99804 * 179.97438 * 11 8 7 14 14 N 1.31512 * 120.00571 * 0.02562 * 13 11 8 15 15 Si 1.86807 * 119.99526 * 180.02562 * 13 11 8 16 16 H 1.48499 * 109.46986 * 90.00169 * 15 13 11 17 17 H 1.48498 * 109.47171 * 210.00088 * 15 13 11 18 18 H 1.48498 * 109.47081 * 330.00176 * 15 13 11 19 19 C 1.46925 * 118.74010 * 306.39029 * 7 6 5 20 20 C 1.53036 * 109.45280 * 240.03267 * 2 1 3 21 21 H 1.08999 * 109.50119 * 181.40100 * 20 2 1 22 22 O 1.42893 * 109.49812 * 61.30244 * 20 2 1 23 23 H 1.09007 * 109.46810 * 60.00233 * 1 2 3 24 24 H 1.08998 * 109.47325 * 179.97438 * 1 2 3 25 25 H 1.08991 * 109.47768 * 300.00319 * 1 2 3 26 26 H 1.09004 * 109.46930 * 299.96888 * 3 2 1 27 27 H 1.09000 * 109.47312 * 179.97438 * 3 2 1 28 28 H 0.96705 * 113.99788 * 180.02562 * 4 3 2 29 29 H 1.09003 * 109.49573 * 178.59337 * 5 2 1 30 30 H 1.08994 * 109.49783 * 298.69484 * 5 2 1 31 31 H 1.08998 * 109.58627 * 174.42034 * 6 5 2 32 32 H 1.08997 * 109.58779 * 294.70470 * 6 5 2 33 33 H 0.97002 * 120.00178 * 179.97438 * 14 13 11 34 34 H 1.09000 * 109.59050 * 173.40042 * 19 7 6 35 35 H 1.09001 * 109.58540 * 293.68318 * 19 7 6 36 36 H 0.96706 * 114.00387 * 179.97438 * 22 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0397 1.4426 0.0000 4 8 1.5626 2.1164 1.1664 5 6 2.0398 -0.7208 1.2501 6 6 1.4992 -2.1541 1.2644 7 7 1.8620 -2.8089 0.0000 8 16 2.6642 -4.2576 0.0000 9 8 3.3350 -4.3448 -1.2497 10 8 3.3347 -4.3450 1.2498 11 6 1.4445 -5.5292 -0.0003 12 1 0.3957 -5.2715 -0.0008 13 6 1.8291 -6.8533 -0.0009 14 7 3.1062 -7.1672 -0.0008 15 14 0.5359 -8.2014 -0.0018 16 1 0.1936 -8.5579 -1.4022 17 1 1.0681 -9.3983 0.6977 18 1 -0.6819 -7.7196 0.6981 19 6 1.4991 -2.1541 -1.2642 20 6 2.0396 -0.7208 -1.2501 21 1 3.1293 -0.7431 -1.2384 22 8 1.5886 -0.0294 -2.4165 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8898 26 1 1.6767 1.9562 -0.8903 27 1 3.1297 1.4429 0.0005 28 1 1.8474 3.0382 1.2323 29 1 3.1296 -0.7430 1.2382 30 1 1.6959 -0.1934 2.1398 31 1 1.9378 -2.7018 2.0985 32 1 0.4146 -2.1346 1.3700 33 1 3.3767 -8.0987 -0.0008 34 1 1.9376 -2.7018 -2.0984 35 1 0.4143 -2.1367 -1.3684 36 1 1.8756 -0.4316 -3.2478 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192952062.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:28 Heat of formation + Delta-G solvation = -194.764519 kcal Electronic energy + Delta-G solvation = -21561.788077 eV Core-core repulsion = 18172.190396 eV Total energy + Delta-G solvation = -3389.597681 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.102 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.72325 -36.57832 -35.67265 -35.27558 -33.99778 -33.16860 -32.81759 -29.78437 -27.00763 -26.45253 -26.09091 -22.93475 -22.13898 -19.03846 -18.48445 -17.42677 -17.18935 -16.86019 -16.33963 -15.38721 -15.11354 -14.96020 -14.51219 -14.33093 -14.01194 -13.52635 -13.27025 -13.05779 -12.57768 -12.31008 -12.03465 -11.77051 -11.72483 -11.54109 -11.23356 -11.17168 -10.71610 -10.67801 -10.60650 -10.45371 -10.32658 -10.11669 -9.98477 -9.88568 -9.78587 -9.26379 -8.92547 -8.16714 -6.71287 -5.33718 2.21297 3.05746 3.12510 3.19265 4.02673 4.15262 4.20709 4.60948 4.62386 4.82987 5.03167 5.09712 5.31535 5.38708 5.49975 5.57902 5.60890 5.78574 5.82489 5.93981 6.00085 6.05886 6.10621 6.19626 6.25912 6.30327 6.41157 6.47285 6.64722 6.81335 7.30958 7.49689 7.60483 7.73171 7.96330 8.87564 10.22161 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.031968 B = 0.005561 C = 0.005510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.663420 B = 5033.539204 C = 5080.678254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.046 4.046 3 C 0.089 3.911 4 O -0.570 6.570 5 C -0.118 4.118 6 C 0.119 3.881 7 N -1.008 6.008 8 S 2.715 3.285 9 O -1.005 7.005 10 O -1.002 7.002 11 C -1.020 5.020 12 H 0.102 0.898 13 C 0.132 3.868 14 N -0.846 5.846 15 Si 0.921 3.079 16 H -0.267 1.267 17 H -0.275 1.275 18 H -0.262 1.262 19 C 0.096 3.904 20 C 0.102 3.898 21 H 0.060 0.940 22 O -0.566 6.566 23 H 0.057 0.943 24 H 0.061 0.939 25 H 0.059 0.941 26 H 0.053 0.947 27 H 0.040 0.960 28 H 0.374 0.626 29 H 0.064 0.936 30 H 0.084 0.916 31 H 0.095 0.905 32 H 0.063 0.937 33 H 0.291 0.709 34 H 0.094 0.906 35 H 0.069 0.931 36 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.178 13.853 -1.230 14.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.046 4.046 3 C 0.012 3.988 4 O -0.375 6.375 5 C -0.157 4.157 6 C -0.007 4.007 7 N -0.844 5.844 8 S 2.816 3.184 9 O -0.996 6.996 10 O -0.992 6.992 11 C -1.153 5.153 12 H 0.120 0.880 13 C -0.085 4.085 14 N -0.476 5.476 15 Si 0.745 3.255 16 H -0.192 1.192 17 H -0.199 1.199 18 H -0.186 1.186 19 C -0.031 4.031 20 C 0.042 3.958 21 H 0.078 0.922 22 O -0.371 6.371 23 H 0.076 0.924 24 H 0.080 0.920 25 H 0.078 0.922 26 H 0.071 0.929 27 H 0.059 0.941 28 H 0.220 0.780 29 H 0.083 0.917 30 H 0.103 0.897 31 H 0.114 0.886 32 H 0.081 0.919 33 H 0.101 0.899 34 H 0.113 0.887 35 H 0.088 0.912 36 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -3.621 13.453 -0.675 13.948 hybrid contribution -0.659 -0.807 -0.615 1.210 sum -4.280 12.646 -1.290 13.413 Atomic orbital electron populations 1.21810 0.93448 1.02168 1.01907 1.20476 0.97389 0.92896 0.93883 1.22163 0.96704 0.92725 0.87254 1.86468 1.77572 1.28556 1.44913 1.21916 1.00952 0.95679 0.97152 1.21346 0.99869 0.92884 0.86619 1.58135 1.77053 1.39827 1.09367 1.00519 0.74035 0.71059 0.72786 1.93338 1.74314 1.86084 1.45824 1.93350 1.74222 1.85996 1.45645 1.30618 1.10634 1.07322 1.66759 0.87956 1.24760 0.96174 0.99133 0.88475 1.69893 1.15594 1.21947 1.40181 0.86160 0.80949 0.79261 0.79171 1.19195 1.19950 1.18649 1.21895 1.00753 0.92826 0.87639 1.22115 0.97437 0.91336 0.84919 0.92241 1.86437 1.79074 1.55444 1.16104 0.92418 0.91963 0.92202 0.92854 0.94134 0.78003 0.91679 0.89749 0.88628 0.91919 0.89874 0.88732 0.91233 0.77305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 7.43 37.16 0.28 -1.56 16 2 C -0.05 -0.64 0.43 -154.47 -0.07 -0.71 16 3 C 0.09 1.08 5.76 37.16 0.21 1.29 16 4 O -0.57 -6.40 12.29 -35.23 -0.43 -6.84 16 5 C -0.12 -1.78 4.78 -26.60 -0.13 -1.90 16 6 C 0.12 2.07 6.00 -3.70 -0.02 2.05 16 7 N -1.01 -20.23 3.29 -113.52 -0.37 -20.61 16 8 S 2.71 71.35 5.01 -107.50 -0.54 70.81 16 9 O -1.01 -28.66 16.61 -57.17 -0.95 -29.61 16 10 O -1.00 -28.89 16.61 -57.17 -0.95 -29.84 16 11 C -1.02 -27.99 9.75 30.60 0.30 -27.69 16 12 H 0.10 2.59 7.81 -52.49 -0.41 2.18 16 13 C 0.13 3.69 5.46 -17.82 -0.10 3.59 16 14 N -0.85 -24.82 13.19 55.43 0.73 -24.09 16 15 Si 0.92 20.54 29.54 -169.99 -5.02 15.52 16 16 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 17 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 18 H -0.26 -5.66 7.11 56.52 0.40 -5.26 16 19 C 0.10 1.63 5.63 -3.71 -0.02 1.61 16 20 C 0.10 1.49 2.75 -26.61 -0.07 1.42 16 21 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 22 O -0.57 -7.02 11.97 -35.23 -0.42 -7.44 16 23 H 0.06 0.77 7.72 -51.92 -0.40 0.37 16 24 H 0.06 0.87 4.98 -51.93 -0.26 0.61 16 25 H 0.06 0.79 7.68 -51.93 -0.40 0.39 16 26 H 0.05 0.63 7.65 -51.93 -0.40 0.23 16 27 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.37 2.46 9.12 45.56 0.42 2.88 16 29 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.08 1.17 7.64 -51.93 -0.40 0.78 16 31 H 0.10 1.78 6.92 -51.93 -0.36 1.42 16 32 H 0.06 0.98 6.70 -51.93 -0.35 0.63 16 33 H 0.29 7.66 8.31 -40.82 -0.34 7.32 16 34 H 0.09 1.67 6.92 -51.93 -0.36 1.31 16 35 H 0.07 1.09 6.70 -51.93 -0.35 0.74 16 36 H 0.38 3.36 9.09 45.56 0.41 3.77 16 LS Contribution 299.47 15.07 4.51 4.51 Total: -1.00 -35.51 299.47 -6.31 -41.83 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -3.25 Total: 7.67 kcal Atomic # 6 Polarization: -22.29 SS G_CDS: 0.38 Total: -21.91 kcal Atomic # 7 Polarization: -45.05 SS G_CDS: 0.36 Total: -44.69 kcal Atomic # 8 Polarization: -70.98 SS G_CDS: -2.75 Total: -73.73 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Atomic # 16 Polarization: 71.35 SS G_CDS: -0.54 Total: 70.81 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -35.51 -6.31 -41.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192952062.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -152.939 kcal (2) G-P(sol) polarization free energy of solvation -35.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds