Wall clock time and date at job start Wed Apr 15 2020 11:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46020 * 2 1 4 4 O 1.42905 * 109.47079 * 59.96661 * 3 2 1 5 5 C 1.53046 * 109.45858 * 119.96575 * 2 1 3 6 6 C 1.53199 * 109.30890 * 58.64478 * 5 2 1 7 7 N 1.46931 * 108.77257 * 54.63459 * 6 5 2 8 8 S 1.65594 * 120.62916 * 126.41456 * 7 6 5 9 9 O 1.42099 * 106.40296 * 203.53576 * 8 7 6 10 10 O 1.42098 * 106.40155 * 336.45573 * 8 7 6 11 11 C 1.76204 * 107.22105 * 89.99668 * 8 7 6 12 12 H 1.07998 * 119.99754 * 0.02562 * 11 8 7 13 13 C 1.37875 * 119.99804 * 179.97438 * 11 8 7 14 14 N 1.31512 * 120.00571 * 0.02562 * 13 11 8 15 15 Si 1.86807 * 119.99526 * 180.02562 * 13 11 8 16 16 H 1.48499 * 109.46986 * 90.00169 * 15 13 11 17 17 H 1.48498 * 109.47171 * 210.00088 * 15 13 11 18 18 H 1.48498 * 109.47081 * 330.00176 * 15 13 11 19 19 C 1.46925 * 118.74010 * 306.39029 * 7 6 5 20 20 C 1.53036 * 109.45280 * 240.03267 * 2 1 3 21 21 H 1.08999 * 109.50119 * 181.40100 * 20 2 1 22 22 O 1.42893 * 109.49812 * 61.30244 * 20 2 1 23 23 H 1.09007 * 109.46810 * 60.00233 * 1 2 3 24 24 H 1.08998 * 109.47325 * 179.97438 * 1 2 3 25 25 H 1.08991 * 109.47768 * 300.00319 * 1 2 3 26 26 H 1.09004 * 109.46930 * 299.96888 * 3 2 1 27 27 H 1.09000 * 109.47312 * 179.97438 * 3 2 1 28 28 H 0.96705 * 113.99788 * 180.02562 * 4 3 2 29 29 H 1.09003 * 109.49573 * 178.59337 * 5 2 1 30 30 H 1.08994 * 109.49783 * 298.69484 * 5 2 1 31 31 H 1.08998 * 109.58627 * 174.42034 * 6 5 2 32 32 H 1.08997 * 109.58779 * 294.70470 * 6 5 2 33 33 H 0.97002 * 120.00178 * 179.97438 * 14 13 11 34 34 H 1.09000 * 109.59050 * 173.40042 * 19 7 6 35 35 H 1.09001 * 109.58540 * 293.68318 * 19 7 6 36 36 H 0.96706 * 114.00387 * 179.97438 * 22 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0397 1.4426 0.0000 4 8 1.5626 2.1164 1.1664 5 6 2.0398 -0.7208 1.2501 6 6 1.4992 -2.1541 1.2644 7 7 1.8620 -2.8089 0.0000 8 16 2.6642 -4.2576 0.0000 9 8 3.3350 -4.3448 -1.2497 10 8 3.3347 -4.3450 1.2498 11 6 1.4445 -5.5292 -0.0003 12 1 0.3957 -5.2715 -0.0008 13 6 1.8291 -6.8533 -0.0009 14 7 3.1062 -7.1672 -0.0008 15 14 0.5359 -8.2014 -0.0018 16 1 0.1936 -8.5579 -1.4022 17 1 1.0681 -9.3983 0.6977 18 1 -0.6819 -7.7196 0.6981 19 6 1.4991 -2.1541 -1.2642 20 6 2.0396 -0.7208 -1.2501 21 1 3.1293 -0.7431 -1.2384 22 8 1.5886 -0.0294 -2.4165 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8898 26 1 1.6767 1.9562 -0.8903 27 1 3.1297 1.4429 0.0005 28 1 1.8474 3.0382 1.2323 29 1 3.1296 -0.7430 1.2382 30 1 1.6959 -0.1934 2.1398 31 1 1.9378 -2.7018 2.0985 32 1 0.4146 -2.1346 1.3700 33 1 3.3767 -8.0987 -0.0008 34 1 1.9376 -2.7018 -2.0984 35 1 0.4143 -2.1367 -1.3684 36 1 1.8756 -0.4316 -3.2478 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192952062.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:28 Heat of formation + Delta-G solvation = -227.447572 kcal Electronic energy + Delta-G solvation = -21563.205320 eV Core-core repulsion = 18172.190396 eV Total energy + Delta-G solvation = -3391.014925 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.102 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.90010 -37.57837 -37.45416 -36.79274 -36.16636 -35.19848 -34.11789 -31.07549 -28.35682 -28.07251 -27.52517 -24.20154 -23.43527 -20.88802 -20.04653 -18.66717 -18.42167 -18.28940 -17.97463 -17.10290 -16.84101 -16.17994 -15.84923 -15.72897 -15.49944 -15.29630 -14.58138 -14.27683 -13.99194 -13.67664 -13.46892 -13.35902 -13.09640 -13.01888 -12.90393 -12.82585 -12.52157 -12.35901 -12.31780 -12.25684 -11.76722 -11.43846 -11.26685 -11.23797 -11.14540 -10.94854 -10.75766 -9.71771 -8.75837 -7.50381 0.25630 1.33033 1.33355 1.49803 2.19199 2.55941 2.71919 3.20552 3.32829 3.64969 3.78143 3.86703 4.06790 4.08264 4.15898 4.29802 4.35328 4.44625 4.53040 4.63608 4.72264 4.76775 4.85134 4.95625 4.96877 5.11266 5.15693 5.23922 5.30574 5.36186 5.56162 5.88762 5.90051 6.76590 6.82326 6.98547 8.19010 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.031968 B = 0.005561 C = 0.005510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.663420 B = 5033.539204 C = 5080.678254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.051 4.051 3 C 0.097 3.903 4 O -0.581 6.581 5 C -0.112 4.112 6 C 0.111 3.889 7 N -1.003 6.003 8 S 2.719 3.281 9 O -1.038 7.038 10 O -1.038 7.038 11 C -1.041 5.041 12 H 0.118 0.882 13 C 0.070 3.930 14 N -0.894 5.894 15 Si 0.990 3.010 16 H -0.253 1.253 17 H -0.262 1.262 18 H -0.249 1.249 19 C 0.089 3.911 20 C 0.112 3.888 21 H 0.051 0.949 22 O -0.561 6.561 23 H 0.061 0.939 24 H 0.054 0.946 25 H 0.064 0.936 26 H 0.059 0.941 27 H 0.044 0.956 28 H 0.395 0.605 29 H 0.055 0.945 30 H 0.100 0.900 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.299 0.701 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.110 14.864 -1.423 16.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.051 4.051 3 C 0.019 3.981 4 O -0.389 6.389 5 C -0.151 4.151 6 C -0.014 4.014 7 N -0.842 5.842 8 S 2.821 3.179 9 O -1.028 7.028 10 O -1.029 7.029 11 C -1.175 5.175 12 H 0.136 0.864 13 C -0.143 4.143 14 N -0.526 5.526 15 Si 0.808 3.192 16 H -0.178 1.178 17 H -0.187 1.187 18 H -0.172 1.172 19 C -0.037 4.037 20 C 0.051 3.949 21 H 0.069 0.931 22 O -0.368 6.368 23 H 0.080 0.920 24 H 0.073 0.927 25 H 0.083 0.917 26 H 0.077 0.923 27 H 0.062 0.938 28 H 0.244 0.756 29 H 0.074 0.926 30 H 0.118 0.882 31 H 0.095 0.905 32 H 0.103 0.897 33 H 0.109 0.891 34 H 0.100 0.900 35 H 0.105 0.895 36 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -5.536 14.498 -0.881 15.544 hybrid contribution -0.062 -1.003 -0.570 1.155 sum -5.598 13.494 -1.451 14.682 Atomic orbital electron populations 1.21741 0.92817 1.01784 1.02318 1.20506 0.97865 0.94067 0.92649 1.21988 0.96806 0.91451 0.87840 1.86408 1.77764 1.30361 1.44415 1.21870 1.00341 0.94170 0.98716 1.21589 1.01228 0.93852 0.84688 1.57614 1.76727 1.38284 1.11572 1.00012 0.74235 0.72121 0.71503 1.93282 1.75578 1.87127 1.46849 1.93291 1.75586 1.87091 1.46888 1.30993 1.11584 1.08259 1.66636 0.86425 1.26027 0.98593 1.02173 0.87517 1.69984 1.17976 1.23141 1.41483 0.85128 0.77999 0.75929 0.80114 1.17752 1.18650 1.17216 1.22166 1.01882 0.94032 0.85647 1.21880 0.96852 0.89888 0.86293 0.93065 1.86417 1.78973 1.55010 1.16366 0.92034 0.92672 0.91741 0.92274 0.93790 0.75552 0.92629 0.88161 0.90480 0.89690 0.89077 0.89972 0.89458 0.75428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.15 7.43 71.98 0.54 -2.62 16 2 C -0.05 -1.31 0.43 -52.15 -0.02 -1.33 16 3 C 0.10 2.08 5.76 71.98 0.41 2.50 16 4 O -0.58 -11.32 12.29 -148.98 -1.83 -13.15 16 5 C -0.11 -3.23 4.78 30.68 0.15 -3.08 16 6 C 0.11 3.83 6.00 86.36 0.52 4.35 16 7 N -1.00 -40.32 3.29 -513.05 -1.69 -42.01 16 8 S 2.72 146.59 5.01 -56.49 -0.28 146.31 16 9 O -1.04 -61.13 16.61 -128.00 -2.13 -63.26 16 10 O -1.04 -62.05 16.61 -128.00 -2.13 -64.17 16 11 C -1.04 -57.53 9.75 67.73 0.66 -56.87 16 12 H 0.12 5.89 7.81 -2.91 -0.02 5.87 16 13 C 0.07 3.88 5.46 84.65 0.46 4.35 16 14 N -0.89 -53.48 13.19 21.45 0.28 -53.20 16 15 Si 0.99 41.28 29.54 68.60 2.03 43.30 16 16 H -0.25 -9.93 7.11 99.48 0.71 -9.22 16 17 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 18 H -0.25 -9.73 7.11 99.48 0.71 -9.02 16 19 C 0.09 2.95 5.63 86.36 0.49 3.43 16 20 C 0.11 3.10 2.75 30.67 0.08 3.18 16 21 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 22 O -0.56 -12.59 11.97 -148.98 -1.78 -14.38 16 23 H 0.06 1.45 7.72 -2.38 -0.02 1.43 16 24 H 0.05 1.40 4.98 -2.39 -0.01 1.39 16 25 H 0.06 1.51 7.68 -2.39 -0.02 1.49 16 26 H 0.06 1.22 7.65 -2.38 -0.02 1.20 16 27 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.39 3.98 9.12 -74.05 -0.68 3.30 16 29 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.10 2.59 7.64 -2.39 -0.02 2.57 16 31 H 0.08 2.93 6.92 -2.39 -0.02 2.91 16 32 H 0.08 2.53 6.70 -2.39 -0.02 2.51 16 33 H 0.30 16.03 8.31 -92.71 -0.77 15.26 16 34 H 0.08 2.92 6.92 -2.39 -0.02 2.91 16 35 H 0.09 2.59 6.70 -2.39 -0.02 2.57 16 36 H 0.40 6.16 9.09 -74.05 -0.67 5.49 16 Total: -1.00 -77.06 299.47 -4.47 -81.53 By element: Atomic # 1 Polarization: 25.34 SS G_CDS: -0.23 Total: 25.12 kcal Atomic # 6 Polarization: -49.38 SS G_CDS: 3.29 Total: -46.10 kcal Atomic # 7 Polarization: -93.80 SS G_CDS: -1.40 Total: -95.20 kcal Atomic # 8 Polarization: -147.09 SS G_CDS: -7.87 Total: -154.96 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 2.03 Total: 43.30 kcal Atomic # 16 Polarization: 146.59 SS G_CDS: -0.28 Total: 146.31 kcal Total: -77.06 -4.47 -81.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192952062.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.916 kcal (2) G-P(sol) polarization free energy of solvation -77.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -222.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -227.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds