Wall clock time and date at job start Wed Apr 15 2020 11:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.46352 * 2 1 4 4 O 1.42896 * 109.46790 * 299.97262 * 3 2 1 5 5 C 1.53040 * 109.44931 * 240.03173 * 2 1 3 6 6 C 1.53197 * 109.31110 * 301.35227 * 5 2 1 7 7 N 1.46957 * 108.89063 * 305.44560 * 6 5 2 8 8 S 1.65602 * 120.65077 * 233.53076 * 7 6 5 9 9 O 1.42101 * 106.40504 * 23.36083 * 8 7 6 10 10 O 1.42109 * 106.40096 * 156.27991 * 8 7 6 11 11 C 1.76197 * 107.21987 * 269.81716 * 8 7 6 12 12 H 1.08004 * 119.99807 * 0.02562 * 11 8 7 13 13 C 1.37875 * 120.00508 * 179.97438 * 11 8 7 14 14 N 1.31516 * 119.99576 * 0.02562 * 13 11 8 15 15 Si 1.86801 * 120.00208 * 180.02562 * 13 11 8 16 16 H 1.48492 * 109.46985 * 60.00209 * 15 13 11 17 17 H 1.48506 * 109.46762 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47060 * 299.99692 * 15 13 11 19 19 C 1.46926 * 118.71783 * 53.35357 * 7 6 5 20 20 C 1.53044 * 109.45829 * 119.97297 * 2 1 3 21 21 H 1.09001 * 109.52587 * 178.60958 * 20 2 1 22 22 O 1.42907 * 109.49607 * 298.68771 * 20 2 1 23 23 H 1.09004 * 109.47242 * 300.03287 * 1 2 3 24 24 H 1.09003 * 109.46954 * 60.02343 * 1 2 3 25 25 H 1.08996 * 109.47521 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47116 * 59.96928 * 3 2 1 27 27 H 1.09001 * 109.47011 * 179.97438 * 3 2 1 28 28 H 0.96703 * 113.99980 * 180.02562 * 4 3 2 29 29 H 1.08995 * 109.49643 * 61.30503 * 5 2 1 30 30 H 1.08994 * 109.49843 * 181.37263 * 5 2 1 31 31 H 1.09001 * 109.58145 * 65.15551 * 6 5 2 32 32 H 1.08998 * 109.58437 * 185.57393 * 6 5 2 33 33 H 0.96998 * 120.00097 * 179.97438 * 14 13 11 34 34 H 1.09002 * 109.58861 * 186.78362 * 19 7 6 35 35 H 1.08996 * 109.58519 * 66.50253 * 19 7 6 36 36 H 0.96699 * 113.99787 * 179.83687 * 22 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4426 0.0000 4 8 1.5639 2.1159 -1.1671 5 6 2.0395 -0.7208 -1.2501 6 6 1.4989 -2.1542 -1.2642 7 7 1.8589 -2.8109 0.0002 8 16 2.6587 -4.2610 0.0005 9 8 3.3276 -4.3507 -1.2500 10 8 3.3309 -4.3483 1.2495 11 6 1.4369 -5.5306 0.0034 12 1 0.3885 -5.2710 0.0042 13 6 1.8190 -6.8553 0.0037 14 7 3.0956 -7.1713 0.0022 15 14 0.5236 -8.2011 0.0061 16 1 -0.3255 -8.0730 -1.2054 17 1 1.1891 -9.5287 0.0066 18 1 -0.3225 -8.0717 1.2196 19 6 1.4991 -2.1542 1.2643 20 6 2.0398 -0.7209 1.2500 21 1 3.1295 -0.7432 1.2388 22 8 1.5889 -0.0295 2.4166 23 1 -0.3634 0.5144 0.8897 24 1 -0.3633 0.5135 -0.8902 25 1 -0.3634 -1.0276 0.0005 26 1 1.6759 1.9565 0.8897 27 1 3.1298 1.4427 0.0005 28 1 1.8494 3.0374 -1.2335 29 1 1.6955 -0.1935 -2.1398 30 1 3.1292 -0.7427 -1.2387 31 1 0.4140 -2.1344 -1.3673 32 1 1.9373 -2.7018 -2.0985 33 1 3.3646 -8.1033 0.0028 34 1 1.9377 -2.7019 2.0984 35 1 0.4145 -2.1346 1.3700 36 1 1.8736 -0.4334 3.2478 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192952064.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:37 Heat of formation + Delta-G solvation = -194.816457 kcal Electronic energy + Delta-G solvation = -21560.142683 eV Core-core repulsion = 18170.542750 eV Total energy + Delta-G solvation = -3389.599933 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.102 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.72254 -36.57988 -35.67082 -35.27403 -33.99624 -33.16771 -32.81754 -29.78307 -27.00965 -26.45373 -26.08945 -22.93650 -22.13865 -19.03861 -18.48286 -17.42776 -17.18737 -16.85983 -16.33749 -15.38452 -15.11202 -14.96255 -14.51323 -14.33303 -14.01072 -13.52687 -13.27052 -13.05764 -12.57813 -12.30990 -12.02991 -11.77250 -11.72511 -11.54199 -11.21003 -11.18662 -10.71769 -10.68360 -10.62020 -10.45423 -10.32516 -10.11704 -9.98442 -9.88640 -9.78654 -9.25208 -8.93140 -8.16751 -6.71056 -5.33656 2.21195 3.07826 3.12068 3.17804 4.02768 4.15205 4.20636 4.60828 4.62665 4.82839 5.03027 5.09670 5.31308 5.38670 5.49878 5.57818 5.60866 5.78552 5.82494 5.93966 6.00060 6.05785 6.10734 6.19506 6.25868 6.30220 6.40941 6.47254 6.64692 6.81284 7.31103 7.49672 7.60450 7.73071 7.95913 8.87521 10.22456 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.031963 B = 0.005559 C = 0.005508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.803982 B = 5035.317593 C = 5082.459314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.046 4.046 3 C 0.089 3.911 4 O -0.570 6.570 5 C -0.118 4.118 6 C 0.119 3.881 7 N -1.008 6.008 8 S 2.715 3.285 9 O -1.002 7.002 10 O -1.005 7.005 11 C -1.020 5.020 12 H 0.102 0.898 13 C 0.133 3.867 14 N -0.846 5.846 15 Si 0.921 3.079 16 H -0.264 1.264 17 H -0.276 1.276 18 H -0.264 1.264 19 C 0.096 3.904 20 C 0.102 3.898 21 H 0.060 0.940 22 O -0.566 6.566 23 H 0.057 0.943 24 H 0.059 0.941 25 H 0.062 0.938 26 H 0.053 0.947 27 H 0.040 0.960 28 H 0.374 0.626 29 H 0.084 0.916 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.096 0.904 33 H 0.291 0.709 34 H 0.094 0.906 35 H 0.069 0.931 36 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.157 13.867 1.211 14.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.046 4.046 3 C 0.012 3.988 4 O -0.375 6.375 5 C -0.157 4.157 6 C -0.007 4.007 7 N -0.844 5.844 8 S 2.816 3.184 9 O -0.992 6.992 10 O -0.996 6.996 11 C -1.154 5.154 12 H 0.120 0.880 13 C -0.085 4.085 14 N -0.476 5.476 15 Si 0.745 3.255 16 H -0.188 1.188 17 H -0.201 1.201 18 H -0.189 1.189 19 C -0.031 4.031 20 C 0.042 3.958 21 H 0.078 0.922 22 O -0.371 6.371 23 H 0.076 0.924 24 H 0.078 0.922 25 H 0.080 0.920 26 H 0.071 0.929 27 H 0.059 0.941 28 H 0.220 0.780 29 H 0.103 0.897 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.114 0.886 33 H 0.102 0.898 34 H 0.113 0.887 35 H 0.088 0.912 36 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -3.598 13.463 0.658 13.951 hybrid contribution -0.668 -0.799 0.610 1.207 sum -4.266 12.664 1.268 13.423 Atomic orbital electron populations 1.21811 0.93446 1.02171 1.01908 1.20476 0.97391 0.92898 0.93880 1.22161 0.96714 0.92729 0.87240 1.86466 1.77583 1.28603 1.44858 1.21912 1.00955 0.95674 0.97162 1.21357 0.99871 0.92864 0.86626 1.58142 1.77255 1.39627 1.09365 1.00512 0.74034 0.71043 0.72788 1.93350 1.74297 1.85972 1.45597 1.93340 1.74261 1.86079 1.45873 1.30589 1.10626 1.07297 1.66862 0.87999 1.24759 0.96195 0.99100 0.88479 1.69887 1.15667 1.21974 1.40094 0.86193 0.80810 0.78710 0.79799 1.18833 1.20104 1.18874 1.21889 1.00772 0.92805 0.87649 1.22118 0.97434 0.91345 0.84920 0.92245 1.86439 1.79232 1.55287 1.16099 0.92416 0.92205 0.91955 0.92853 0.94135 0.78001 0.89737 0.91681 0.91927 0.88612 0.89819 0.88732 0.91248 0.77305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 7.43 37.16 0.28 -1.56 16 2 C -0.05 -0.64 0.43 -154.47 -0.07 -0.71 16 3 C 0.09 1.08 5.76 37.16 0.21 1.29 16 4 O -0.57 -6.40 12.29 -35.23 -0.43 -6.83 16 5 C -0.12 -1.78 4.78 -26.61 -0.13 -1.90 16 6 C 0.12 2.07 6.00 -3.69 -0.02 2.05 16 7 N -1.01 -20.23 3.30 -113.50 -0.37 -20.61 16 8 S 2.71 71.36 5.01 -107.50 -0.54 70.82 16 9 O -1.00 -28.89 16.61 -57.17 -0.95 -29.84 16 10 O -1.01 -28.66 16.61 -57.17 -0.95 -29.61 16 11 C -1.02 -27.99 9.74 30.60 0.30 -27.70 16 12 H 0.10 2.57 7.81 -52.48 -0.41 2.16 16 13 C 0.13 3.69 5.46 -17.82 -0.10 3.59 16 14 N -0.85 -24.83 13.19 55.43 0.73 -24.09 16 15 Si 0.92 20.54 29.54 -169.99 -5.02 15.52 16 16 H -0.26 -5.69 7.11 56.52 0.40 -5.29 16 17 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 18 H -0.26 -5.69 7.11 56.52 0.40 -5.29 16 19 C 0.10 1.63 5.62 -3.71 -0.02 1.61 16 20 C 0.10 1.49 2.75 -26.61 -0.07 1.42 16 21 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 22 O -0.57 -7.02 11.98 -35.23 -0.42 -7.44 16 23 H 0.06 0.77 7.72 -51.93 -0.40 0.37 16 24 H 0.06 0.79 7.68 -51.93 -0.40 0.39 16 25 H 0.06 0.87 4.98 -51.93 -0.26 0.61 16 26 H 0.05 0.63 7.65 -51.93 -0.40 0.23 16 27 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.37 2.46 9.12 45.56 0.42 2.88 16 29 H 0.08 1.17 7.64 -51.93 -0.40 0.78 16 30 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.06 0.98 6.69 -51.93 -0.35 0.63 16 32 H 0.10 1.78 6.92 -51.93 -0.36 1.43 16 33 H 0.29 7.69 8.31 -40.82 -0.34 7.35 16 34 H 0.09 1.67 6.92 -51.93 -0.36 1.31 16 35 H 0.07 1.09 6.70 -51.93 -0.35 0.74 16 36 H 0.38 3.36 9.08 45.56 0.41 3.78 16 LS Contribution 299.47 15.07 4.51 4.51 Total: -1.00 -35.48 299.47 -6.31 -41.79 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -3.25 Total: 7.70 kcal Atomic # 6 Polarization: -22.30 SS G_CDS: 0.38 Total: -21.92 kcal Atomic # 7 Polarization: -45.06 SS G_CDS: 0.36 Total: -44.70 kcal Atomic # 8 Polarization: -70.98 SS G_CDS: -2.75 Total: -73.73 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Atomic # 16 Polarization: 71.36 SS G_CDS: -0.54 Total: 70.82 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -35.48 -6.31 -41.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192952064.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.023 kcal (2) G-P(sol) polarization free energy of solvation -35.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds