Wall clock time and date at job start Wed Apr 15 2020 11:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.46352 * 2 1 4 4 O 1.42896 * 109.46790 * 299.97262 * 3 2 1 5 5 C 1.53040 * 109.44931 * 240.03173 * 2 1 3 6 6 C 1.53197 * 109.31110 * 301.35227 * 5 2 1 7 7 N 1.46957 * 108.89063 * 305.44560 * 6 5 2 8 8 S 1.65602 * 120.65077 * 233.53076 * 7 6 5 9 9 O 1.42101 * 106.40504 * 23.36083 * 8 7 6 10 10 O 1.42109 * 106.40096 * 156.27991 * 8 7 6 11 11 C 1.76197 * 107.21987 * 269.81716 * 8 7 6 12 12 H 1.08004 * 119.99807 * 0.02562 * 11 8 7 13 13 C 1.37875 * 120.00508 * 179.97438 * 11 8 7 14 14 N 1.31516 * 119.99576 * 0.02562 * 13 11 8 15 15 Si 1.86801 * 120.00208 * 180.02562 * 13 11 8 16 16 H 1.48492 * 109.46985 * 60.00209 * 15 13 11 17 17 H 1.48506 * 109.46762 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47060 * 299.99692 * 15 13 11 19 19 C 1.46926 * 118.71783 * 53.35357 * 7 6 5 20 20 C 1.53044 * 109.45829 * 119.97297 * 2 1 3 21 21 H 1.09001 * 109.52587 * 178.60958 * 20 2 1 22 22 O 1.42907 * 109.49607 * 298.68771 * 20 2 1 23 23 H 1.09004 * 109.47242 * 300.03287 * 1 2 3 24 24 H 1.09003 * 109.46954 * 60.02343 * 1 2 3 25 25 H 1.08996 * 109.47521 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47116 * 59.96928 * 3 2 1 27 27 H 1.09001 * 109.47011 * 179.97438 * 3 2 1 28 28 H 0.96703 * 113.99980 * 180.02562 * 4 3 2 29 29 H 1.08995 * 109.49643 * 61.30503 * 5 2 1 30 30 H 1.08994 * 109.49843 * 181.37263 * 5 2 1 31 31 H 1.09001 * 109.58145 * 65.15551 * 6 5 2 32 32 H 1.08998 * 109.58437 * 185.57393 * 6 5 2 33 33 H 0.96998 * 120.00097 * 179.97438 * 14 13 11 34 34 H 1.09002 * 109.58861 * 186.78362 * 19 7 6 35 35 H 1.08996 * 109.58519 * 66.50253 * 19 7 6 36 36 H 0.96699 * 113.99787 * 179.83687 * 22 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4426 0.0000 4 8 1.5639 2.1159 -1.1671 5 6 2.0395 -0.7208 -1.2501 6 6 1.4989 -2.1542 -1.2642 7 7 1.8589 -2.8109 0.0002 8 16 2.6587 -4.2610 0.0005 9 8 3.3276 -4.3507 -1.2500 10 8 3.3309 -4.3483 1.2495 11 6 1.4369 -5.5306 0.0034 12 1 0.3885 -5.2710 0.0042 13 6 1.8190 -6.8553 0.0037 14 7 3.0956 -7.1713 0.0022 15 14 0.5236 -8.2011 0.0061 16 1 -0.3255 -8.0730 -1.2054 17 1 1.1891 -9.5287 0.0066 18 1 -0.3225 -8.0717 1.2196 19 6 1.4991 -2.1542 1.2643 20 6 2.0398 -0.7209 1.2500 21 1 3.1295 -0.7432 1.2388 22 8 1.5889 -0.0295 2.4166 23 1 -0.3634 0.5144 0.8897 24 1 -0.3633 0.5135 -0.8902 25 1 -0.3634 -1.0276 0.0005 26 1 1.6759 1.9565 0.8897 27 1 3.1298 1.4427 0.0005 28 1 1.8494 3.0374 -1.2335 29 1 1.6955 -0.1935 -2.1398 30 1 3.1292 -0.7427 -1.2387 31 1 0.4140 -2.1344 -1.3673 32 1 1.9373 -2.7018 -2.0985 33 1 3.3646 -8.1033 0.0028 34 1 1.9377 -2.7019 2.0984 35 1 0.4145 -2.1346 1.3700 36 1 1.8736 -0.4334 3.2478 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192952064.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:36 Heat of formation + Delta-G solvation = -227.476706 kcal Electronic energy + Delta-G solvation = -21561.558938 eV Core-core repulsion = 18170.542750 eV Total energy + Delta-G solvation = -3391.016188 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.102 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.89877 -37.57801 -37.45358 -36.79129 -36.16477 -35.19666 -34.11862 -31.07374 -28.35536 -28.07339 -27.52585 -24.20317 -23.43451 -20.88670 -20.04567 -18.66512 -18.41937 -18.28989 -17.97396 -17.09956 -16.83843 -16.18196 -15.85017 -15.72888 -15.49991 -15.29607 -14.58163 -14.27692 -13.98268 -13.67731 -13.46966 -13.36464 -13.09654 -13.00693 -12.90220 -12.82647 -12.51953 -12.35879 -12.33413 -12.25862 -11.76768 -11.43912 -11.25112 -11.24058 -11.14479 -10.95612 -10.75777 -9.71707 -8.75613 -7.50301 0.25551 1.33088 1.35151 1.48343 2.19335 2.56246 2.71887 3.20512 3.32766 3.64930 3.78096 3.86638 4.06822 4.08133 4.15876 4.29833 4.35400 4.44612 4.53044 4.63557 4.72159 4.76810 4.85094 4.95561 4.96923 5.11176 5.15664 5.23869 5.30535 5.36267 5.56095 5.88543 5.90000 6.76585 6.82203 6.98573 8.19093 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.031963 B = 0.005559 C = 0.005508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.803982 B = 5035.317593 C = 5082.459314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.051 4.051 3 C 0.097 3.903 4 O -0.581 6.581 5 C -0.112 4.112 6 C 0.111 3.889 7 N -1.003 6.003 8 S 2.719 3.281 9 O -1.038 7.038 10 O -1.038 7.038 11 C -1.042 5.042 12 H 0.118 0.882 13 C 0.070 3.930 14 N -0.894 5.894 15 Si 0.990 3.010 16 H -0.251 1.251 17 H -0.263 1.263 18 H -0.250 1.250 19 C 0.089 3.911 20 C 0.112 3.888 21 H 0.051 0.949 22 O -0.561 6.561 23 H 0.061 0.939 24 H 0.064 0.936 25 H 0.054 0.946 26 H 0.059 0.941 27 H 0.044 0.956 28 H 0.395 0.605 29 H 0.100 0.900 30 H 0.055 0.945 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.299 0.701 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.091 14.881 1.406 16.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.051 4.051 3 C 0.019 3.981 4 O -0.389 6.389 5 C -0.151 4.151 6 C -0.014 4.014 7 N -0.842 5.842 8 S 2.821 3.179 9 O -1.029 7.029 10 O -1.028 7.028 11 C -1.175 5.175 12 H 0.136 0.864 13 C -0.143 4.143 14 N -0.526 5.526 15 Si 0.808 3.192 16 H -0.175 1.175 17 H -0.187 1.187 18 H -0.174 1.174 19 C -0.037 4.037 20 C 0.051 3.949 21 H 0.069 0.931 22 O -0.368 6.368 23 H 0.080 0.920 24 H 0.083 0.917 25 H 0.073 0.927 26 H 0.077 0.923 27 H 0.062 0.938 28 H 0.244 0.756 29 H 0.119 0.881 30 H 0.074 0.926 31 H 0.103 0.897 32 H 0.095 0.905 33 H 0.109 0.891 34 H 0.100 0.900 35 H 0.105 0.895 36 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -5.514 14.512 0.865 15.548 hybrid contribution -0.071 -0.995 0.564 1.146 sum -5.585 13.517 1.429 14.695 Atomic orbital electron populations 1.21743 0.92819 1.01786 1.02318 1.20506 0.97864 0.94070 0.92645 1.21985 0.96820 0.91452 0.87824 1.86405 1.77777 1.30407 1.44357 1.21866 1.00352 0.94159 0.98723 1.21601 1.01230 0.93831 0.84691 1.57620 1.76919 1.38095 1.11571 1.00006 0.74233 0.72111 0.71505 1.93292 1.75656 1.87072 1.46842 1.93283 1.75528 1.87124 1.46899 1.30971 1.11616 1.08229 1.66721 0.86408 1.26026 0.98621 1.02131 0.87515 1.69981 1.18055 1.23120 1.41415 0.85166 0.77817 0.75499 0.80729 1.17467 1.18717 1.17380 1.22159 1.01900 0.94013 0.85658 1.21885 0.96855 0.89891 0.86295 0.93059 1.86419 1.79129 1.54856 1.16360 0.92035 0.91742 0.92667 0.92278 0.93784 0.75551 0.88147 0.92619 0.89701 0.90464 0.89072 0.89981 0.89478 0.75432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.15 7.43 71.98 0.53 -2.62 16 2 C -0.05 -1.30 0.43 -52.15 -0.02 -1.33 16 3 C 0.10 2.08 5.76 71.98 0.41 2.49 16 4 O -0.58 -11.30 12.29 -148.98 -1.83 -13.13 16 5 C -0.11 -3.23 4.78 30.67 0.15 -3.08 16 6 C 0.11 3.83 6.00 86.36 0.52 4.35 16 7 N -1.00 -40.32 3.30 -512.99 -1.69 -42.01 16 8 S 2.72 146.61 5.01 -56.49 -0.28 146.32 16 9 O -1.04 -62.05 16.61 -128.00 -2.13 -64.18 16 10 O -1.04 -61.14 16.61 -128.00 -2.13 -63.27 16 11 C -1.04 -57.56 9.74 67.73 0.66 -56.90 16 12 H 0.12 5.88 7.81 -2.91 -0.02 5.86 16 13 C 0.07 3.90 5.46 84.65 0.46 4.36 16 14 N -0.89 -53.49 13.19 21.45 0.28 -53.20 16 15 Si 0.99 41.25 29.54 68.60 2.03 43.27 16 16 H -0.25 -9.85 7.11 99.48 0.71 -9.15 16 17 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 18 H -0.25 -9.77 7.11 99.48 0.71 -9.06 16 19 C 0.09 2.95 5.62 86.36 0.49 3.43 16 20 C 0.11 3.09 2.75 30.67 0.08 3.18 16 21 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 22 O -0.56 -12.60 11.98 -148.98 -1.78 -14.38 16 23 H 0.06 1.45 7.72 -2.38 -0.02 1.43 16 24 H 0.06 1.51 7.68 -2.39 -0.02 1.49 16 25 H 0.05 1.40 4.98 -2.39 -0.01 1.39 16 26 H 0.06 1.21 7.65 -2.39 -0.02 1.20 16 27 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.39 3.97 9.12 -74.05 -0.68 3.29 16 29 H 0.10 2.59 7.64 -2.39 -0.02 2.57 16 30 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.08 2.53 6.69 -2.39 -0.02 2.51 16 32 H 0.08 2.93 6.92 -2.39 -0.02 2.92 16 33 H 0.30 16.08 8.31 -92.71 -0.77 15.31 16 34 H 0.08 2.92 6.92 -2.39 -0.02 2.90 16 35 H 0.09 2.58 6.70 -2.39 -0.02 2.57 16 36 H 0.40 6.16 9.08 -74.06 -0.67 5.49 16 Total: -1.00 -77.01 299.47 -4.48 -81.49 By element: Atomic # 1 Polarization: 25.44 SS G_CDS: -0.23 Total: 25.21 kcal Atomic # 6 Polarization: -49.40 SS G_CDS: 3.28 Total: -46.11 kcal Atomic # 7 Polarization: -93.81 SS G_CDS: -1.41 Total: -95.22 kcal Atomic # 8 Polarization: -147.10 SS G_CDS: -7.87 Total: -154.96 kcal Atomic # 14 Polarization: 41.25 SS G_CDS: 2.03 Total: 43.27 kcal Atomic # 16 Polarization: 146.61 SS G_CDS: -0.28 Total: 146.32 kcal Total: -77.01 -4.48 -81.49 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192952064.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.989 kcal (2) G-P(sol) polarization free energy of solvation -77.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -223.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -227.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds